BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494809
Length=2995
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42220.1 | Symbols: | Ubiquitin-like superfamily protein | ... 4608 0.0
> AT5G42220.1 | Symbols: | Ubiquitin-like superfamily protein
| chr5:16872342-16877666 FORWARD LENGTH=3009
Length=3009
Score = 4608 bits (2495), Expect = 0.0
Identities = 2850/3019 (94%), Gaps = 34/3019 (1%)
Strand=Plus/Plus
Query 1 CCCGACACAATCGTCCTTGTTCTTCCCCTTTAACTCCGAACAAATCAGGCTTTGGTTTCG 60
||||||||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||
Sbjct 1 CCCGACACAATCGCCCTTGTTCTTCCCCTTTAACTCTGAACACATCAGG-TTTGGTTTCG 59
Query 61 TGTTTCAACTTTCAGATACTTCTCTAGATTTCAATCGGAGGA-TCTTTTGTTCCGACAAA 119
|||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct 60 TGTTTCAACTTTGAGATACTTCTCTAGATTTCAATCGGA-GAGTCTTTTGTTCCGCCAAA 118
Query 120 GTTTCAATTTTTTAATATCCTACGACGGCAAAGAGGGTTCATGGAAGATCAACCCATTAA 179
|||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 119 GTTTCAATTTTTCAATACCCCACGACGGCAAATAGGGTTCATGGAAGATCAACCCATTAA 178
Query 180 CCAGTGCTCTAGTAGCACCAATGCATCAGAGAAAACTCCAGAATCAACCCTTGAGCTTAA 239
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 179 CCAGTGCTCTAGTAGCACCAATGCGTCGGAGAAAACTCCAGAATCAACCCTTGAGCTTAA 238
Query 240 CATCAAGACGTTAGATTCACGGACGTACACTTTCCAAGTGAACAAGAATGAAACTGTTTC 299
|||||| |||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 239 CATCAAAACGTTAGACTCGCGGACGTATACTTTCCAAGTGAACAAGAATGAAACTGTTTT 298
Query 300 GCTATTCAAGGAGAAGATAGCTAGTGAGACAGGAGTTCCGGTTGGTCAGCAGCGGCTCAT 359
|||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||
Sbjct 299 GCTATTCAAGGAGAAGATTGCTAGTGAGACAGGGGTGCCGGTTGGTCAGCAGCGGCTCAT 358
Query 360 TTTCCGAGGAAGGGTTTTGAAAGATGATCATCCTCTCTCGGAGTATCATTTGGAAAATGG 419
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTTCCGAGGACGGGTTTTGAAAGATGATCATCCTCTCTCGGAGTATCATTTGGAAAATGG 418
Query 420 GCATACTTTACACTTGATTGTGAGGCAGCCAGCAGAATCAGTTCCTTCATCTGGTACACC 479
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 419 GCATACTTTACACTTGATTGTGAGGCAGCCAGCAGAATCAGCTCCTTCCTCTGGTACACC 478
Query 480 TTCAGAAGGGGCAACTCCAAATGATGGAAATAGTACAAATGGTGGACCATCTCGAAATGG 539
|||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 TTCACAAGGGGCAACTGCAAATGATGGAAATAATACAAATGGTGGACCATCTCGAAATGG 538
Query 540 AAGACATGTCTCCCACAGCGTAGTTCTTGGGTCTTTTAATGTTGGAGATCAGACAGAAGG 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AAGACATGTCTCCCACAGCGTAGTTCTTGGGTCTTTTAATGTTGGAGATCAGACAGAAGG 598
Query 600 CATTGTTCCAGATCTCAGCCGGGTCATTGGAGCAGTTCTAAATTCTTTTGGGGTTGGTGG 659
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 599 CATTGTTCCAGACCTCAGCCGGGTCATTGGAGCAGTTCTAAATTCTTTTGGAGTTAGTGG 658
Query 660 ACAGCATCCTACAAATAACAGTACTAATGGCACGCAATCCTCTATGCCCTCGAATCCGTC 719
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 659 ACAGCTTCCTACAAATCACAGTACTAATGGCACGCAATCCTCTATGCCCTCGAATCAGTC 718
Query 720 TTCTCATGCACCTCCTGGCAATACATCTGATGGAGCGCCTGGCATTGGTGGTCAAAGCCA 779
||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 719 GTCTAATGCACCTCCTGGAAATACATCTGATGGAGAGCCTGGCATTGGTGGTCAAAGCCA 778
Query 780 AGCTACGGGTCATTCACAACCTAGGCAAGCATTTCCTGGTGTATCATTTCAAGCATCGAT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 779 AGCTACGGGTCATTCACAACCTAGGCAAGCATTTCCTGGTGTATCATTTCAAACATCGAT 838
Query 840 GCCTCGTGTAGTTCAGATTCCGGTTACAGCAGCTACGACGATTCCTATTCCTACATTTC- 898
||||||||||||||||||||| ||||||||||| || ||||||||||| ||| || |||
Sbjct 839 GCCTCGTGTAGTTCAGATTCCTGTTACAGCAGCCACAACGATTCCTATCCCTTCA-TTCT 897
Query 899 TAACGCCTATACCGGATTCGTTAGACACTCTAGTGGAGTTCATTAATCGGATGGAGCAGG 958
|||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 898 TAACGCCTATTCCGGATTCCTTAGACACTCTAATGGAGTTCATTAATCGGATGGAGCAGG 957
Query 959 CATTATCACAAAATGGCTATCAGCCAGATACCTCTTCTGCTAGATCCGGAGGGCGACCAA 1018
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 958 CATTATCACAAAATGGCTATCAGCCAGATACCTCTTCTGCTGGATCCGGAGGGCGACCAA 1017
Query 1019 GGGAAGAGTTGCCTAGAAATAGACGAGGTGCAGCAACACCTGAAGCACTCTCTGTTGTCC 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GGGAAGAGTTGCCTAGAAATAGACGAGGTGCAGCAACACCTGAAGCACTCTCTGTTGTCC 1077
Query 1079 TAAGGAATGCACAAGATTTACTGAGTGGTCTAGGTGTCTCTTCTTTATCGCATATTGCGG 1138
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1078 TAAGGAATGCACAACATTTACTGAGTGGTCTCGGTGTCTCTTCTTTATCGCATATTGCGG 1137
Query 1139 GACGCCTGGAGCAAGATGGGTCCTCTTCAGATCCTACTCTAAGGGCACAAATCCAGACAG 1198
|||| |||||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 1138 GACGTCTGGAGCAAGATGGTTCATCTTCAGATCCTACTCTAAGGTCACAAATCCAGACAG 1197
Query 1199 AGGCCGTGCAAGTAGGTCTTGCTATGCAACATTTAGGGGCCCTCCTACTGGAGCTTGGGC 1258
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1198 AGGCCGTGCAAGTAGGTCTTGCCATGCAACATTTAGGGGCCCTCCTACTGGAGCTTGGAC 1257
Query 1259 GCACAATTTTGGCATTGAGAATGGCACCGTCTCCGGAATTATCCTATGTGAATGCTGGGC 1318
||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1258 GCACAATTTTGACATTGAGAATGGCACCGTCGCCGGAATTATCCTATGTGAATGCAGGGC 1317
Query 1319 CTGCTGTTTATATATCTCCATCAGGACCGAATCCTATTATGGTTCAGCCTTTTCCTCACC 1378
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTGCTGTGTATATATCTCCATCAGGACCGAATCCTATTATGGTTCAGCCTTTTCCTCACC 1377
Query 1379 AAATCAGCCCTCTCTTTACTGGTGCTGCTGCCTCATCAAATCCAGTCACAGGACCAGTTG 1438
|||||||||||||||||||||||||| ||| ||||||||||||| | || ||||| ||||
Sbjct 1378 AAATCAGCCCTCTCTTTACTGGTGCTACTGTCTCATCAAATCCACTAACCGGACCTGTTG 1437
Query 1439 GTTTAGGAACTGCCCAAAGGCACATTAACATTCACATACATGCTGGCACATCAGGTTCAC 1498
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1438 GTTTAGGAACTGCCCAAAGGCACATTAATATTCACATACATGCTGGCACATCAGGTTCAC 1497
Query 1499 CTATGATGTCATCAGTTGGGAACCAGCGAAGCAATGGAGAAGGAGGGCAAGGAGACCGTG 1558
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1498 CTATGTTGTCATCAGTTGGGAACCAGCGAAGCAATGGAGAAGGAGGACAAGGAGACCGTG 1557
Query 1559 ACAGCAATACGAGTTCAGTTGCTGCGGCTGTTCCATCACACTCTACCGGTGAGAATGTTT 1618
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1558 ACAGCAATACAAGTTCAGTTCCTGCGGCTGTTCCATCACACTCTACCGGTGAGAACGTTT 1617
Query 1619 CTGCTGGGGTTCAACCTGGTTTGGATGGTGCTGTTTCAGTTGCCCAAATCAATGCAAGGA 1678
|||||||||||||||||||||||| || || |||||||||||| ||||||||||||||||
Sbjct 1618 CTGCTGGGGTTCAACCTGGTTTGGGTGATGATGTTTCAGTTGCTCAAATCAATGCAAGGA 1677
Query 1679 TCAGAGATATGGTAAACATTATGCAAGGAAGAAACCAAATTCCATCGGGAACAGAATCTC 1738
| |||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||
Sbjct 1678 TAAGAGATATGGTAAACATTATGCAAGGAAGAGACCAGATTCCATCGGGAATAGAATCTC 1737
Query 1739 TCGAGCGGGATACGTCTACGGGCCATGGTGTTGCCACTGCTATACATGAGCAGGCTACTA 1798
||||| |||||| |||||||||||||||||||||||||||||| | ||||||| |||| |
Sbjct 1738 TCGAGAGGGATATGTCTACGGGCCATGGTGTTGCCACTGCTATGCCTGAGCAGCCTACCA 1797
Query 1799 ACATTGCAGCTACTTGCACACCTGAGTCGT-TAAGTGGCTCACTGCATGACTTACCATCT 1857
|||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 1798 ACATTGCAACTACTTGCGCACCTGAGTCGTCT-AGTGGCTCACTGCATGACTTACCATCT 1856
Query 1858 GAGAGGAGCAATTCAGAGTGTCAAAGTGAAAAAGATCTTGGTGGAGATTTAGGGCATCCA 1917
||||||||||| |||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1857 GAGAGGAGCAACTCAGTGTGTCAAAATGAAAAAGATCTTGGTGGAGATTTAGAGCATCCA 1916
Query 1918 GCCC-ATGCAAAAGATATCTCTTGTACTACAGGACAATCTTCAGCTCCGTCTGGAGATGC 1976
|||| | |||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1917 GCCCGA-GCAAAAGATACCTCTTGTACTACAGGACAATCATCAGCTCCGTCTGGAGATGC 1975
Query 1977 TACCGGTGATGCCAAAGAAACCAAGAAGGCTACTCCAGAGGTAGCTACAGCTACACCACT 2036
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1976 TACCGGTGATGCCAAAGAAACCAATAAGGCTACTCCAGAGGTAGCTACAGCTACACCACT 2035
Query 2037 TGGATTGGGGCTTGGAGGTTTAGACCGTAAGAAACGAAGCAAGCAGCCGAAGGTATCAGG 2096
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TGGATTGGGGCTTGGCGGTTTAGACCGTAAGAAACGAAGCAAGCAGCCGAAGGTATCAGG 2095
Query 2097 TAAGAATGAAGATAGTGGGACTTTAGCTACACTTGAAGGTTTGCAACAGAGCAGTGGGAC 2156
||||| ||||||||| ||||||| |||||||||||||||| ||||||| |||||||||||
Sbjct 2096 TAAGACTGAAGATAGCGGGACTTCAGCTACACTTGAAGGTGTGCAACAAAGCAGTGGGAC 2155
Query 2157 CAGTGGTCAGCAGCTTTTGCAATCTCTCTTTTCTGGTAGTTCTCGTTCAGATGAGACTGG 2216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 CAGTGGTCAGCAGCTTTTGCAATCTCTCTTTTCTGGTAGTTCTCGTTCAGATGAGACTGG 2215
Query 2217 TCTTAGACGCGGGCAAGGTTCAGATGATCGGGTAGATGTCTCAAGTGCAGTGTCTCAAGT 2276
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 2216 TCTTAGACGCGGGCAAGGTTCAGATGATCGTGTAGATGTCTCAAGTGCAATGTCTCAGGT 2275
Query 2277 CCTGGAGAGCCCTGGACTGGATGGATTGCTAGCAGGGGTATCTCGACAAGCTGGTGTTGA 2336
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 CCTGGAGAGCCCTGTATTGGATGGATTGCTAGCAGGGGTATCTCGACAAGCTGGTGTTGA 2335
Query 2337 TTCACCAAATATGCTGAGAAATATGCTCCAGCAGCTTACCCAGAGCCCACAGATCATGAA 2396
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2336 TTCACCAAATATGCTGAGAAATATGCTCCAGCAGTTTACCCAGAATCCACAGATCATGAA 2395
Query 2397 CACAGTCCAACAAATTGCCCAACAGGTGGATGGGCAAGAGATAGAAAATATGATGTCAGG 2456
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2396 CACAGTCCAACAGATTGCGCAACAGGTGGATGGGCAAGAGATAGAAAATATGATGTCAGG 2455
Query 2457 CGGATCTCAAGGCGAGGGTGGCGGCTTTGATTTCTCTAGAATTGTCCAACAAATGATGCC 2516
||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 2456 TGGAGCTCAAGGCGAGGGCGGCGGCTTTGATTTCTCTAGAATGGTCCAACAAATGATGCC 2515
Query 2517 TCTAGTCTCACGTGCTTTTAGCCAAGGAGGGCCATCGCCTCATCCCACAACACA-ACAGC 2575
||||||||||||||||||||||||||||||||||| |||||||||| ||||| | |||||
Sbjct 2516 TCTAGTCTCACGTGCTTTTAGCCAAGGAGGGCCATTGCCTCATCCCGCAACA-ATACAGC 2574
Query 2576 CTGATGATCGTCAACCTTCTCAGGTAAATGTTCAATCCATGGCTCAAATGATTGAGCACT 2635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 CTGATGATCGTCAACCTTCTCAGGTAAATGTTCAATCCATGGCTCAAATGATTGAGCACT 2634
Query 2636 CTGATCCACCAGAGGATGTCTTCCGTGCAATGGTCGAAAATGCTGCGATGAGCCAAGACG 2695
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2635 CTGATCCACCAGAGGATGTCTTCCGTGCAATGGTCGAAAATGCTGCGATAAGCCAAGACG 2694
Query 2696 ACCTAGTGAATGAGCTTTGCTGTGATGCAGTTCTTTCTCAAGAATATGCAGAGTTGCTAA 2755
| |||||||| |||||||||||||||| || |||||||||||||||||| ||||||||||
Sbjct 2695 AACTAGTGAACGAGCTTTGCTGTGATGAAGCTCTTTCTCAAGAATATGCGGAGTTGCTAA 2754
Query 2756 GACGTGATATTGAAGACCGGCTAAAAGATGATCAAGGTCCATAAGCTATTTGGTAGAATT 2815
|||||||||| |||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 2755 GACGTGATATCGAAGGCCGGCTAAAAGATGATCAAGGTCTATAAGATATTTGGTTGAATT 2814
Query 2816 GGTTCCATAAGTGTCAGATCTTTAAAGTATCTTTGTTTATTTGTTGAGATCCCTCTCTTT 2875
||||| ||||||||| |||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 2815 GGTTCTGTAAGTGTCATATCTTTGAAGTATCTTTGTTTATTTGCTGAGATCCCTCACTTA 2874
Query 2876 TGTATTAAGAATTAGGGTTTGGGATGGTCTA--C------AA-C-----C----GTAAAT 2917
||||||||||||||||||||||||||||||| | || | | |||| |
Sbjct 2875 TGTATTAAGAATTAGGGTTTGGGATGGTCTATACTCTGCTAAACATAAGCAAACGTAATT 2934
Query 2918 TATCTGGTCTTTAAAGGGCCGATTCAATTTGATATTTCC-TCCTTTAACCAGTTCATATT 2976
|||||||||| |||||||||||||||||||||||||||| || ||||||||| | |||
Sbjct 2935 TATCTGGTCTCTAAAGGGCCGATTCAATTTGATATTTCCATC-TTTAACCAG---AGATT 2990
Query 2977 ACTCATAACTCTCGACATT 2995
|||||||||||||||||||
Sbjct 2991 ACTCATAACTCTCGACATT 3009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148895486824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5