BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494813
Length=681
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42200.1 | Symbols: | RING/U-box superfamily protein | chr5... 843 0.0
> AT5G42200.1 | Symbols: | RING/U-box superfamily protein | chr5:16860467-16861232
FORWARD LENGTH=766
Length=766
Score = 843 bits (456), Expect = 0.0
Identities = 628/707 (89%), Gaps = 27/707 (4%)
Strand=Plus/Plus
Query 1 AAGATGCACTACACACGCATCTCACCGGTTTTAGTACCATCTCCGCCACCAACAACCGCC 60
||||||||||||||||||||||| |||| |||||||||||||| ||||||| ||||
Sbjct 54 AAGATGCACTACACACGCATCTCGCCGGCTTTAGTACCATCTCTATCACCAACCGCCGCG 113
Query 61 GTTGAATCTAGCGGCGGTGGGCCGATGATAGCTACCGTTTTCATGGCCCTCCTCCTTCCT 120
| |||||||||||| |||||| ||||||||||||| |||||||||||||| ||||| ||
Sbjct 114 GCTGAATCTAGCGGTGGTGGGACGATGATAGCTACTGTTTTCATGGCCCTTCTCCTCCCC 173
Query 121 TGCGTTGGCATGTGCATCGTCTTCCTAATATATCTCTTCCTCTTGTGGTGTTCCACACGT 180
||||| ||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 174 TGCGTCGGCATGTGCATCGTCTTCCTAATCTATCTATTCCTCTTGTGGTGCTCCACACGG 233
Query 181 CGTCGTATTGAACGTCTTCGATTTGCGGAACCTGTTAAACCGGTCACCGGTAAAGGCCTT 240
|||||||| ||||| ||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 234 CGTCGTATCGAACGCCTTCGATTTGCTGAACCGGTTAAACCGGTCACAGGTAAAGGCCTT 293
Query 241 TCGGTGTTAGAGCTCGAGAAAATCCCTAAACTCACCGGAAAAGAGCTTGCCATAATAGCT 300
|||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||
Sbjct 294 TCGGTGTTGGAGCTCGAGAAAATCCCTAAACTCACCGGAAGAGAGCTAGCCGTAATAGCT 353
Query 301 AGGTCGACGGAGTGTGCCGTTTGCCTTGAAGATATAGAGAGTGGTCAATCGGGTCGTCTA 360
|| || ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 354 AGATCAACGGAATGTGCTGTTTGCCTTGAAGATATAGAGAGTGGTCAATCGACTCGTCTA 413
Query 361 GTTCCCGGTTGCAACCATGGGTTTCACCGATTATGTGCTGACACGTGGCTATCTAACCAC 420
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 414 GTTCCCGGTTGCAACCATGGGTTTCACCAATTATGTGCTGATACGTGGCTATCTAACCAC 473
Query 421 ACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACATTCCTCAATGTAATGAAAAT 480
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 474 ACGGTTTGTCCAGTTTGCCGCGCCGAGCTGGCTCCGAACCTACCTCAATGTAATGAAAAT 533
Query 481 CAAAGTCCATGTTAAAAACAGAATCTTT-AAAATTATTCTTTCCTTCTTTTTTACTCGTT 539
|||||||||||||| ||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 534 CAAAGTCCATGTTAGAAACAGAAT-TTTCAAAAACATTCTTTCCTTCTTTTTTACTCGTT 592
Query 540 TTGTGTACTTGTCTTGttttt---tt------GT---GT--AAGCGTTATAGAGAGA-A- 583
|||||||||| |||||||||| || || || |||||||||||||||| |
Sbjct 593 TTGTGTACTTCTCTTGTTTTTCCCTTTTCTTAGTTTTGTGTAAGCGTTATAGAGAGAGAA 652
Query 584 GTTTCCAGGTA-T---TAG--TTGTT-TTTTGTT--GTACATGAAATTAATTTTAGAGTA 634
|||||||||| | ||| ||||| |||| || ||||||||||||| ||||||||||
Sbjct 653 GTTTCCAGGTTGTAACTAGCCTTGTTGTTTTTTTTTGTACATGAAATTAGTTTTAGAGTA 712
Query 635 AAGTAAAAAATTTATAGTTTTGCCATTGTATTTACAACAATTTTTCT 681
|| || ||||||| |||| || ||||||||||||||||||||||||
Sbjct 713 AATTACGAAATTTACAGTTATGTCATTGTATTTACAACAATTTTTCT 759
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32953600432
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5