BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494814
Length=2782
Score E
Sequences producing significant alignments: (Bits) Value
AT3G33151.1 | Symbols: | transposable element gene | chr3:1396... 909 0.0
AT3G42470.1 | Symbols: | transposable element gene | chr3:1459... 590 3e-167
> AT3G33151.1 | Symbols: | transposable element gene | chr3:13960517-13963601
REVERSE LENGTH=3085
Length=3085
Score = 909 bits (492), Expect = 0.0
Identities = 692/787 (88%), Gaps = 19/787 (2%)
Strand=Plus/Plus
Query 491 GAAGAAGCTGCCAATATGGAAGAAGATGGTGAAGGAAGTCATGTACCAAAGGAAAGAGTG 550
||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct 566 GAAGAAGCTGCCAATATGGAAGAAGATGGTGAAGGAAGTAAAGTAGCGGAGGAAAGAGTG 625
Query 551 AAAGTAAG-AAGAAAAAGAGGACCAACAAAGATGCGTAAAGTGGAGACTCAGAAAATCCT 609
|||| ||| ||| || |||||||||||||||||||||||||| | || | |||||||||
Sbjct 626 AAAGAAAGAAAG-AAGAGAGGACCAACAAAGATGCGTAAAGT-G-GA-T--GAAAATCCT 679
Query 610 AATGAAAAGGTTTTAGTTTCTTTCACTGACTTTGGTGATCATGTTGGAACTGGTTCAGTA 669
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 680 AATGAAAAGGTTTCAGTTACTTTCACTGACTTTGGTGATCATGTTGGACCTGGTTCAATA 739
Query 670 ACATTATCATCTTTTCTTGGTGTCCTTGTGAGTGAACACATTCCGGTTACACTTGCCGAT 729
|||||||||||||||||| ||||||||||||| |||||| ||||||||||||| || |||
Sbjct 740 ACATTATCATCTTTTCTTTGTGTCCTTGTGAGGGAACACGTTCCGGTTACACTAGCTGAT 799
Query 730 TGGA-GAAATCTTGATGCAGTGACTAAAGAAACATTGTGGGAAGAAATTCAGGTATATAT 788
|||| |||| ||||||||||| ||||| || || |||||||||||||||| ||||||||
Sbjct 800 TGGAGGAAA-ATTGATGCAGTGGCTAAACAAGCAATGTGGGAAGAAATTCATGTATATAT 858
Query 789 TTATATGCAACTAttttttttGTTTAACAGATATGAAACTTGTTTGACCTTTGCTTGTTG 848
||||||| || | ||| ||| |||| | ||||||| || |||| |||| ||||||
Sbjct 859 TTATATGGAA-AAAAAATTTGGTTGAACATAAATGAAACAGGTGTGACTTTTGATTGTTG 917
Query 849 TACT-TGATGCAGGGGAGGTTTGACATGGAAGAAGAATGGAAAAAAGCTGTTATTATGAA 907
|| | ||||| ||||||||||| || || ||||||||||| | | || ||||||| | ||
Sbjct 918 TA-TGTGATGTAGGGGAGGTTTAACTTGCAAGAAGAATGGTAGAGAGTTGTTATTTTTAA 976
Query 908 GCAAA-TGTGTAATATCTGGAGGGGTAGGAAGTCAAGGCTAGTGTCAAAAGTACGTGCTG 966
||||| || | ||||||||||||| | |||||||||||||||| ||| ||||||||||||
Sbjct 977 GCAAATTG-GAAATATCTGGAGGGCTTGGAAGTCAAGGCTAGTTTCAGAAGTACGTGCTG 1035
Query 967 CGAAGAC-AGCTGCTGAGAGACTAGCTTTAAAACCCAGCAACATCCCATCCAGTCAAGTG 1025
||||||| | |||||||||| ||| |||||||||||||||||||||||||| |||||||
Sbjct 1036 CGAAGACTA-TTGCTGAGAGAATAGATTTAAAACCCAGCAACATCCCATCCATTCAAGTG 1094
Query 1026 TGGAACTCTTGGGTTAGGAGCAAGACTAGCACATCTTTCACGGTTAGTTATCTACAAGTA 1085
|||||||||||||||||||||||||||| | || ||||||||||||||||||||||| ||
Sbjct 1095 TGGAACTCTTGGGTTAGGAGCAAGACTAACGCAGCTTTCACGGTTAGTTATCTACAACTA 1154
Query 1086 AGTAAATTTCTTGTTTATATGTCATGTTTTATAGATTTAATCACACTCATATTTATAATG 1145
| || |||||||||||||||||||| | ||||||||||| | |||||||| |||
Sbjct 1155 A-CAACTTTCTTGTTTATATGTCATGGCTGATAGATTTAAT-GTGTTGATATTTATCATG 1212
Query 1146 TAGGAAATAAGTAACAAGTACAGGAAGATGAGACAAAATCAGATTCCTCACACCACCAGC 1205
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TAGGAAATAAGTAACAAATACAGGAAGATGAGACAAAATCAGATTCCTCACACCACCAGC 1272
Query 1206 CGCAAAGGAATGCTTCGTTTAGCTGATGATTTGGTAATAATAGTTGTCAA-TATCTATAT 1264
|| |||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1273 CGTAAAGGAATGCTTTGTTTAGCTCATGATATGGTAATAATAGTTGTCAAATATCTATAT 1332
Query 1265 ATATTGT 1271
|||||||
Sbjct 1333 ATATTGT 1339
Score = 839 bits (454), Expect = 0.0
Identities = 650/739 (88%), Gaps = 35/739 (5%)
Strand=Plus/Plus
Query 2076 TGATATATCTCTAATCATTAGCCTCTTACATTTTAGCAAAACAAGGAAGGTGAAACTCAA 2135
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
Sbjct 2341 TGATATATCTCTAATCATTAGCTTCTTACATTTTAGCAAACCAAGGAAGGTGAAACTCGA 2400
Query 2136 AGATGCAAAATATTTGATTGGGA-TAATGAAGACGATGAGGTTATTGCTGAAGGTCTCGT 2194
|||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||| | ||
Sbjct 2401 AGATTCAAAATATATGATT-GGACTAATGAAGACGATGAGGTTATTGCTGAAGGTGTTGT 2459
Query 2195 GTGCTCATCTAACTCCAAAGAGAGGGTTAACAATATACCTCTAGGTCCAAGTGTTATTAG 2254
||||||||||||||||||||||| |||||||||||||||||||| ||||||| | ||||
Sbjct 2460 GTGCTCATCTAACTCCAAAGAGAAGGTTAACAATATACCTCTAGAACCAAGTGCTGTTAG 2519
Query 2255 TATTCAAGTTGTGAAGGTGTTCAATGATAATGCTCCTTTGTGGAGGCCAACTGCTGATAT 2314
|||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||
Sbjct 2520 TATTCAAGTTGTGAAGGTGTTCAATGGTAATGCTCATTTGTGGAGGCCAACTACTGATAT 2579
Query 2315 TAGTGTAATTGGTGATGCAATTAACGAGAAAATCGCATGGCCAGTTCAAAAGATTGATGT 2374
| || |||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct 2580 TTGTTTAATGGGTGATGCAATTAACGAGAAAATCGCATGGCCAGTCCTAAAGATTGACGT 2639
Query 2375 CACGGCTGC-AGCCACTCCAGAACCAACACTACCTAAAGTTCA--TTTGTT-T-GT--C- 2426
||||||||| | ||||| |||| || ||||||||||||| || |||||| | || |
Sbjct 2640 CACGGCTGCCA-CCACTACAGATGCAGCACTACCTAAAGTCCAGGTTTGTTATTGTAACC 2698
Query 2427 T--------C-TT-GATTGA-TG-T--T-G--G----AACTTTCATTGATGTTGGAACTT 2465
| | || | ||| || | | | | |||||||||||||||||||||||
Sbjct 2699 TTGTTAATTCATTTGTTTGTCTGCTGGTTGATGTTGGAACTTTCATTGATGTTGGAACTT 2758
Query 2466 GCTTCTATTATTTGCTTTGAGTTGTAGAGTCCAGGCAGCAATAGTTCCACCAAAAGTCCA 2525
|||| ||||||| ||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 2759 GCTTTTATTATTGGCTTTGAGTTGTAGAGTTCAGGCAGCAACAGTTCCACAAAAAGTCCA 2818
Query 2526 AAGCAGAAGTGTTTTCTTTTAGATTGCAGCAACTCTGGGCGTAAGGTAGCTGAAGGAAGA 2585
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 2819 AAGCAGAAGTGTTTTCTTTTAGATTGCAGCAATTCTGGACATAAGGTAGCTGAAGGAAGA 2878
Query 2586 GTAATTTCAACAGATCCAGAA-GATACGTGCCATCATGTACCCCTAGGTCCAAATGCAAG 2644
||| |||||||||| || ||| ||| | |||||| |||||||||||||||| ||||||||
Sbjct 2879 GTACTTTCAACAGACCC-GAACGATGCTTGCCATAATGTACCCCTAGGTCCTAATGCAAG 2937
Query 2645 CAAGGTCTGTGTAGAAGTGGCTAAGATTGGTAATGCAAAGGTATGGAGGCCAAGTTCAGA 2704
||| ||||| || ||||||||||||||||||||||||| ||| |||||||||| | ||||
Sbjct 2938 CAAAGTCTGGGTTGAAGTGGCTAAGATTGGTAATGCAATGGTCTGGAGGCCAAATCCAGA 2997
Query 2705 GATTGTATATATTTCTGATGCAATAGGTTCTGTTGTAGCATGGC-AAATGATAAAATAGA 2763
||| | ||| |||||||||||||||||||| ||||||||||||| ||||||||||||| |
Sbjct 2998 GATCGAATACATTTCTGATGCAATAGGTTCAGTTGTAGCATGGCCAAATGATAAAATAAA 3057
Query 2764 GTTCGTGTGAAACTTAGAC 2782
|||||||||||||||||||
Sbjct 3058 GTTCGTGTGAAACTTAGAC 3076
Score = 616 bits (333), Expect = 5e-175
Identities = 455/511 (89%), Gaps = 20/511 (4%)
Strand=Plus/Plus
Query 1261 ATATATAT-T-GTTTATATAGaaaaaaaaaGAGTTCAAACCCAAGTAAGGTGACTAGGAG 1318
|||||||| | |||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1368 ATATATATGTACTTTATATAGAAAAAAAAAGAGTACAGACCCAAGTAAGGTGACTAGGAG 1427
Query 1319 TAAGGTATGGATTGCGGGACACACTCATGCTGATGGTAGACCTGTGAAGCCTCAATTTGC 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 TAAGGTATGGATTGCGGGACACACTCATGCTGATGGTAGACCTGTGAAGCCTCAATTTGC 1487
Query 1379 CGAGACTATTGTAAGAATTCTGGAACTTGTTATAT--TGTGTAAAACTAATGCATCATGA 1436
|||||||| || |||||||||||||||||||| |||||| || ||||| || ||||
Sbjct 1488 TGAGACTATGGTGAGAATTCTGGAACTTGTTATGGCCTGTGTATAAGTAATGGATTATGA 1547
Query 1437 TCAATGAGTTTGCTTGTG-TTTAAATGTTTGTCT---C-GGAAACAAATACAATCATTTG 1491
| ||| ||||| || || ||||||||||||| | | |||| |||||||| ||| |||
Sbjct 1548 TAAATTAGTTTTTTT-TGGTTTAAATGTTTGTATGATCAGGAA-CAAATACATTCACTTG 1605
Query 1492 ATAGTGAAATGGACTCTACATCAGCT-GCTGATAACATAAGGGAATATGTTGTGAGCAAG 1550
||||| |||||||||||||||||||| | ||| |||||||||||| ||| ||||||||||
Sbjct 1606 ATAGTCAAATGGACTCTACATCAGCTTG-TGAAAACATAAGGGAAGATGCTGTGAGCAAG 1664
Query 1551 ATTTTGG-AAAAGACAAACCTGGACGAGTAAGGGGGTTTGGTAGAGGGATTACGGCTACT 1609
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 ATTTTGGGAAAAGACAAACCTGGACGAGTAAGGGGGTTTGGTAGAGGGATTACGGCTACT 1724
Query 1610 AAGTTAGCGTTTCTGCAAGCTAGAGACGAAAAGATGGCAGAAATGAAAAGTGAGATTGAT 1669
|||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 1725 AAGTTAGCATTTCTGCAAGCTAGAGACGCAAAGATGGCAGAAATGCAAAGTGAGATTCAG 1784
Query 1670 GAGTTAAAGGGAATGTTTAGAGACTTAGCTGGAAAGAAAG-TAAAAT-TCCTT-TTCCTT 1726
||||||||||||||| | |||||||||||||||| |||| |||| | ||||| ||||||
Sbjct 1785 GAGTTAAAGGGAATGGTCCGAGACTTAGCTGGAAA-AAAGGTAAACTGTCCTTGTTCCTT 1843
Query 1727 ATCTCAGA-AAAGT-AATGGTGATACTTAAA 1755
||||||| |||| |||| ||||||| |||
Sbjct 1844 ATCTCAGTTAAAGGGAATGATGATACTGAAA 1874
Score = 610 bits (330), Expect = 2e-173
Identities = 462/520 (89%), Gaps = 32/520 (6%)
Strand=Plus/Plus
Query 2 GGTTTCGATTATGATTTTTGGGTTTCGATTGAAGCTGTTCTTCATTTATCAGTTTCAGAA 61
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 43 GGTTTCGATTATGATTTTTGGGTTTCGGTTGAAACTGTTCTTCATTTATCAGTTTCAGAA 102
Query 62 ATGGCGAAGACAAGAGGAGGAGGTCAAGTTGGTTCTCGTCGTAGTAGGCGTAATCAAGGC 121
|||| |||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||
Sbjct 103 ATGGTGAAGACAAGAGGTGGAGGTAAAGTTGGTTCTCGTCGTAGTAGACGTAACCAAGGC 162
Query 122 TTGGAGGTAGAAGATGTTACACCACCAGTTGCTCCTGCAACAACACTAAAGGTGAATAAG 181
||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 163 TTGGAGGTAGAAGATATAACACCACAAGTTGCTCCTGCAACAACATTAAAGGTGAATAAG 222
Query 182 AAAAGAAAAGCAAAGAAAGTGGGTACGAGAAGTAGTACTAGAAGCAAGAAAGTGGCTGCT 241
|||||||||||||||||||||| ||| | | | | | ||||||||||| ||||||||
Sbjct 223 AAAAGAAAAGCAAAGAAAGTGGCTAC-A-A-G-A--A---GAAGCAAGAAAATGGCTGCT 273
Query 242 CAAGATGATGAGGTAGAAGATGTTACACCGCAAGATAATGTAGATGATGAGGTAGAAGAT 301
| ||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 274 CGAGATGATGAGGTAGAAGATGTTACACC------T---GTAGATGATGAGGTAGAAGAT 324
Query 302 GTTACACCGCAAGATGATTTGGTTGATAG-TGTAACACCGGAAGTTGTGGAAGAAGAGAA 360
|| ||||||||||||||| ||| || || ||| |||||||| |||||||||||||||||
Sbjct 325 GTGACACCGCAAGATGATGAGGTAGA-AGATGTTACACCGGATGTTGTGGAAGAAGAGAA 383
Query 361 GGGTAATGACAAAGAAGATGTAACA---CCGGAGGCTGATCAGACTGAGAATGCAA-TGT 416
||||||||||||||| ||||||| ||||||||||||||||||||||| |||| |||
Sbjct 384 GGGTAATGACAAAGA---TGTAACAGTACCGGAGGCTGATCAGACTGAGAAAGCAAATGT 440
Query 417 CTGAAGATGAGAAAGAAGATTTTGAGATAGAAGGAGAAGCTTGCTTGACTAGACAGGAAC 476
||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| ||||
Sbjct 441 CTGAAGATGAGAAAGAAGATTCTGAGATAGAAGGAGAAGCTTGTTTGACTGGACAAGAAC 500
Query 477 CGCAAGACGATGAA-GAAGAAGCTGCCAATATGGAAGAAG 515
||| | || ||| |||||||||||||||||||||||||
Sbjct 501 AGCA-G--GA-GAATGAAGAAGCTGCCAATATGGAAGAAG 536
Score = 472 bits (255), Expect = 1e-131
Identities = 333/370 (90%), Gaps = 7/370 (2%)
Strand=Plus/Plus
Query 1710 TAA-AATTCCTT-TTCCTTATCTCAGAAAAGTAATGGTGATACTTAAATATGTGAGAGTA 1767
||| |||| ||| ||||||||||||||||||| | ||||||| ||| || |||||||
Sbjct 1903 TAATAATT-CTTGTTCCTTATCTCAGAAAAGTTACAATGATACTGAAACATCTGAGAGTT 1961
Query 1768 GTGGTGGATTAAAAATAA-GAGTTAGAGTACAAATACTGGATTGGATTCATTCAGGAGAA 1826
||||||||| ||| || ||||||||||||||||| | ||||||||||||||||||||
Sbjct 1962 TTGGTGGATT-CAAAGAAGGAGTTAGAGTACAAATATTAGATTGGATTCATTCAGGAGAT 2020
Query 1827 GTAGTTGTTGGTGAAGGAGAATTCTGTTCTGCTGAACCGATGTACAAAATTGGTCGTATA 1886
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2021 GTAGTTGTAGGTGAAGGAGAATTGTGTTCTGCTGAACCGATGTACAAAATTGGTCGTATA 2080
Query 1887 CCAATTGGTCCTAATGAAATGGTTGTCCTTGTTAAGTCTGTACTAAGCTCAAAAGCTTCT 1946
|||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||
Sbjct 2081 CCAATTGGTCCTAATGCAATGGTTGTCCTTGTTAAGTCTGCACTAAGCTTAGAAGCTTCT 2140
Query 1947 CTCTGGAGGCCTACATCAGATGTGTTATATCTTGAGGAAGCTGTTGGATACAAAATACCT 2006
|| |||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 2141 CTGTGGAGGCCTACAACAGATGTGTTATATCTTGAAGAAGCTGTGGGATGCAAAATACCT 2200
Query 2007 TGGCCAATGGACAAAGTGCTTTTGTATA-GCGATCCAGTCACTTCTGAAGATGTATCCAT 2065
|||||||| ||||||||||||||||||| | | ||||| | |||||||||||||||||||
Sbjct 2201 TGGCCAATAGACAAAGTGCTTTTGTATAAGGG-TCCAGCCGCTTCTGAAGATGTATCCAT 2259
Query 2066 GGTAAAGTTT 2075
||| ||||||
Sbjct 2260 GGTCAAGTTT 2269
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 242 CAAGATGATGAGGTAGAAGATGTTACACCG 271
||||||||||||||||||||||||||||||
Sbjct 334 CAAGATGATGAGGTAGAAGATGTTACACCG 363
> AT3G42470.1 | Symbols: | transposable element gene | chr3:14594163-14599355
REVERSE LENGTH=5193
Length=5193
Score = 590 bits (319), Expect = 3e-167
Identities = 450/510 (88%), Gaps = 21/510 (4%)
Strand=Plus/Plus
Query 1261 ATATATAT-T-GTTTATATAGaaaaaaaaaGAGTTCAAACCCAAGTAAGGTGACTAGGAG 1318
|||||||| | ||||||||| ||||||||| || || ||||||||||||||||||||||
Sbjct 235 ATATATATGTACTTTATATAG-AAAAAAAAGTGTACAGACCCAAGTAAGGTGACTAGGAG 293
Query 1319 TAAGGTATGGATTGCGGGACACACTCATGCTGATGGTAGACCTGTGAAGCCTCAATTTGC 1378
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 AAAGGTATGGATTGCGGGACACACTCATGCTGATGGTAGACCTGTGAAGCCTCAATTTGC 353
Query 1379 CGAGACTATTGTAAGAATTCTGGAACTTGTTAT--ATTGTGTAAAACTAATGCATCATGA 1436
|||||||| || |||||||||||||||||||| |||||| || ||||| || ||||
Sbjct 354 TGAGACTATGGTGAGAATTCTGGAACTTGTTATGGCCTGTGTATAAGTAATGGATTATGA 413
Query 1437 TCAATGAG-TTTGCTTGTGTTTAAATGTTTG--T-CTC-GGAAACAAATACAATCATTTG 1491
||||| || ||| ||| ||||||||||||| | || || |||||||||||||| |||
Sbjct 414 TCAATTAGTTTTTTTTG-GTTTAAATGTTTGTATGATCAGG-AACAAATACAATCACTTG 471
Query 1492 ATAGTGAAATGGACTCTACATCAGCTGCTGATAACATAAGGGAATATGTTGTGAGCAAGA 1551
||||| |||||||||||||||||||| |||| |||||||||||| ||| |||||||||||
Sbjct 472 ATAGTCAAATGGACTCTACATCAGCTTCTGAAAACATAAGGGAAGATGCTGTGAGCAAGA 531
Query 1552 TTTT-GGAAAAGACAAACCTGGACGAGTAAGGGGGTTTGGTAGAGGGATTACGGCTACTA 1610
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TTTTGGGAAAAGACAAACCTGGACGAGTAAGGGGGTTTGGTAGAGGGATTACGGCTACTA 591
Query 1611 AGTTAGCGTTTCTGCAAGCTAGAGACGAAAAGATGGCAGAAATGAAAAGTGAGATTGATG 1670
||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| | |
Sbjct 592 AGTTAGCATTTCTGCAAGCTAGAGACGCAAAGATGGCAGAAATGCAAAGTGAGATTCAGG 651
Query 1671 AGTTAAAGGGAATGTTTAGAGACTTAGCTGGAAAGAAAG-TAAAATTCC-TT-TTCCTTA 1727
|||||||| |||| | |||||||||||||||| |||| ||| | || || |||||||
Sbjct 652 AGTTAAAG--AATGGTCCGAGACTTAGCTGGAAA-AAAGGTAATCTGCCCTTGTTCCTTA 708
Query 1728 TCTCAGA-AAAGT-AATGGTGATACTTAAA 1755
|||||| |||| |||| ||||||| |||
Sbjct 709 TCTCAGTTAAAGGGAATGATGATACTGAAA 738
Score = 484 bits (262), Expect = 1e-135
Identities = 336/371 (91%), Gaps = 7/371 (2%)
Strand=Plus/Plus
Query 1710 TAA-AATTCCTT-TTCCTTATCTCAGAAAAGTAATGGTGATACTTAAATATGTGAGAGTA 1767
||| |||| ||| ||||||||||||||||||||| ||||||| ||| || |||||||
Sbjct 767 TAATAATT-CTTGTTCCTTATCTCAGAAAAGTAACAATGATACTGAAACATTTGAGAGTT 825
Query 1768 GTGGTGGA-TTAAAAATAAGAGTTAGAGTACAAATACTGGATTGGATTCATTCAGGAGAA 1826
||||||| | ||| | | ||||||||||||||||| ||||||||||||||||||||||
Sbjct 826 TTGGTGGACTCAAAGA-AGGAGTTAGAGTACAAATATTGGATTGGATTCATTCAGGAGAT 884
Query 1827 GTAGTTGTTGGTGAAGGAGAATTCTGTTCTGCTGAACCGATGTACAAAATTGGTCGTATA 1886
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 885 GTAGTTGTAGGTGAAGGAGAATTCTGTTCTGCTGAACCGATGTACAAAATTAGTCGTATA 944
Query 1887 CCAATTGGTCCTAATGAAATGGTTGTCCTTGTTAAGTCTGTACTAAGCTCAAAAGCTTCT 1946
|||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 945 CCAATTGGTCCTAATGCAATGGTTGTCCTTGTTAAGTCTGCACTAAGCTCAGAAGCTTCT 1004
Query 1947 CTCTGGAGGCCTACATCAGATGTGTTATATCTTGAGGAAGCTGTTGGATACAAAATACCT 2006
||||||||||||||| ||||||| ||||||||||| |||||||| |||| ||||||||||
Sbjct 1005 CTCTGGAGGCCTACAACAGATGTATTATATCTTGAAGAAGCTGTGGGATGCAAAATACCT 1064
Query 2007 TGGCCAATGGACAAAGTGCTTTTGTATA-GCGATCCAGTCACTTCTGAAGATGTATCCAT 2065
||| |||| ||||||||||||||||||| | | ||||| | |||||||||||||||||||
Sbjct 1065 TGGTCAATAGACAAAGTGCTTTTGTATAAGGG-TCCAGCCGCTTCTGAAGATGTATCCAT 1123
Query 2066 GGTAAAGTTTT 2076
|||||||||||
Sbjct 1124 GGTAAAGTTTT 1134
Score = 303 bits (164), Expect = 4e-81
Identities = 193/207 (93%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 2076 TGATATATCTCTAATCATTAGCCTCTTACATTTTAGCAAAACAAGGAAGGTGAAACTCAA 2135
|||||||||| ||||||||||| ||| ||||||||||||| ||||||||||||||||| |
Sbjct 1205 TGATATATCTTTAATCATTAGCTTCTCACATTTTAGCAAACCAAGGAAGGTGAAACTCGA 1264
Query 2136 AGATGCAAAATATTTGATTGGGA-TAATGAAGACGATGAGGTTATTGCTGAAGGTCTCGT 2194
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| | ||
Sbjct 1265 AGATGCAAAATATATGATT-GGACTAATGAAGACGATGAGGTTATTGCTGAAGGTGTTGT 1323
Query 2195 GTGCTCATCTAACTCCAAAGAGAGGGTTAACAATATACCTCTAGGTCCAAGTGTTATTAG 2254
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| | ||||
Sbjct 1324 GTGCTCATCTAACTCCAAAGAGAAGGTTAACAATATACCTCTAGGACCAAGTGCTGTTAG 1383
Query 2255 TATTCAAGTTGTGAAGGTGTTCAATGA 2281
|||||||||||||||||||||||||||
Sbjct 1384 TATTCAAGTTGTGAAGGTGTTCAATGA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138209927965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5