BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494819

Length=548
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42146.1 | Symbols:  | unknown protein; Has 98 Blast hits to...   874    0.0  


> AT5G42146.1 | Symbols:  | unknown protein; Has 98 Blast hits 
to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:16844345-16844969 FORWARD 
LENGTH=625
Length=625

 Score =  874 bits (473),  Expect = 0.0
 Identities = 524/549 (95%), Gaps = 2/549 (0%)
 Strand=Plus/Plus

Query  1    AGAGAGACAAAGAGGAAGATGGGTTGGTTTATTAAGGAAAGAAGAGGAGGTTCATGGAAG  60
            |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  43   AGAGAGACAACGAGGAAGATGGGGTGGTTTATTAAGGAAAGAAGAGGAGGTTCATGGAAG  102

Query  61   CGAGGATGGTTAGAGGAAACACTACTAACAACATCAGCACCTCCTCTTACACTACTAGCT  120
            ||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct  103  CGAGGATGGTTAGAGGAAACACTCCTAACATCATCAGCTCCTCCTCTTACACTACTAGCT  162

Query  121  CT-CTTAGCCATCATATCTTTACTCCTATTCCTCTCTTCATACCCGCGTTACAAATACGA  179
            || ||| ||||||||||||||||| || |||||||||||||| ||||||||||| |||||
Sbjct  163  CTCCTT-GCCATCATATCTTTACTACTCTTCCTCTCTTCATATCCGCGTTACAAGTACGA  221

Query  180  GGTTGAGAAAACCGCGGCTAATCTCAAGCTCTTCATGCTATTCCTCCCAATTCTCTTTGT  239
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  GGTTGAGAAAACCGCTGCTAATCTCAAGCTCTTCATGCTATTCCTCCCAATTCTCTTTGT  281

Query  240  ATTCCTCCTCCTTTCTCTAAACTTCGTCCATCGACTTCTCTTTAAATCCTCTTACTCCGT  299
            |||| ||||| | ||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct  282  ATTCGTCCTCGTCTCTCTAAGCTTCGTCCATCGACTTCTCTTCAAATCCTCTTACTCCGT  341

Query  300  TAGAGCAAACCAGGCTAAGTCCCTTTTTGGAGAAGGAAACTTTCCGTGGGGAGTTTTGCT  359
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  342  TAGAGCAAACCAGGCTAAGTCCCTTTTTGGAGAAGGAAACTTTCCGTGGGGAGTTTTGCT  401

Query  360  TATGCTAATACTTCTACTTCTTTTGGTTTCTAAACAATCTTACTTTCACTCCTTATGGTA  419
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  402  TATGCTAATTCTTCTACTTCTTTTGGTTTCTAAACAATCTTACTTTCACTCCTTATGGTA  461

Query  420  CCCCACCTTATGAGTTATGATCTTCCAATAATTCATATCTAGTCTTCAAATGTAATCTTT  479
            |||||  |||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct  462  CCCCAATTTATGAGTTATGATCTTCCAATCATTCATATATAGTCTTCAAATGTAATATTT  521

Query  480  AGATTGATCATTGCTTCTTGTAATCCATAATTCCACACATGTTAAAAGACATTTTGAGTA  539
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  522  AGATTGATCATTGCTTCTTGTAATCCATAATTCCACACATGTTAAAAGACATTTTGAGAA  581

Query  540  TAATTATAA  548
            |||| ||||
Sbjct  582  TAATGATAA  590



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26272458881


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5