BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494821
Length=2070
Score E
Sequences producing significant alignments: (Bits) Value
AT5G42120.1 | Symbols: | Concanavalin A-like lectin protein ki... 3155 0.0
> AT5G42120.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr5:16833073-16835148 REVERSE LENGTH=2076
Length=2076
Score = 3155 bits (1708), Expect = 0.0
Identities = 1951/2070 (94%), Gaps = 9/2070 (0%)
Strand=Plus/Plus
Query 5 ATCATCATCACTCTCTCTTCTTCTTCTACGTAATTCTCTTCCTTTCCCAAGATTTCCCCA 64
|||||||| |||||||| || ||||| || |||||||||||||||||| |||||| ||||
Sbjct 8 ATCATCATTACTCTCTCGTCATCTTCCACCTAATTCTCTTCCTTTCCCTAGATTTTCCCA 67
Query 65 CACTTTCTCACCGTTTCTCGCCGCCGCTACACAACTTAACTCTCTACGGCGACGCCTTCT 124
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 68 CACTTTCTCACCGTTTCTCGCCGCCGCTACAAAACTTAACTCTCTACGGCGACGCCTTCT 127
Query 125 TCCGCGACCGTACAATCTCTCTCACACAACAACAACCTTGCTTTCCCTCCGCCACAACAC 184
||||||||||||||||||| || || ||||||||||||||||||||||||| ||||||||
Sbjct 128 TCCGCGACCGTACAATCTCACTAACCCAACAACAACCTTGCTTTCCCTCCGTCACAACAC 187
Query 185 CGCCGTCAAAACCAACCTCCTCCGGCATCGGGCGAGCTCTCTACGTATACCCAATTAAGT 244
| |||||||||||| | ||||||||||| || |||||||||||||| |||||||| ||||
Sbjct 188 CACCGTCAAAACCATCTTCCTCCGGCATTGGACGAGCTCTCTACGTGTACCCAATAAAGT 247
Query 245 TTCTTGAACCTTCCACTAACACAACCGCTTCTTTCTCATGCCGCTTCTCCTTCTCCATCA 304
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 248 TTCTCGAACCTTCCACTAACACAACCGCTTCTTTCTCTTGCCGCTTCTCCTTCTCCATCA 307
Query 305 TCTCTTCTCCTTCTTGCCCTTTTGGTGACGGCTTCGCTTTCTTGATCACATCTAATGCTG 364
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 308 TCGCTTCTCCTTCTTGCCCTTTTGGTGACGGCTTCGCTTTCTTGATCACGTCTAATGCTG 367
Query 365 ACTCATTCGTCTTCTCTAATGGCTTCTTGGGTCTACCAAATCCGGATGATTCTTTCATCG 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 368 ACTCATTCGTCTTCTCTAATGGCTTCTTGGGTCTACCAAATCCTGATGATTCTTTCATCG 427
Query 425 CCGTCGAGTTTGATACTGGATTTGACCCGGGTCATGGTGATATCAACGATAACCACGTTG 484
|||| |||||||||||| |||||||||||| ||| ||||| |||||||||||||| ||||
Sbjct 428 CCGTTGAGTTTGATACTAGATTTGACCCGGTTCACGGTGACATCAACGATAACCATGTTG 487
Query 485 GAATCGATGTTAATTCAATCTTCTCCGTTGCTTCCGTTGATGCGATTTCAAAAGGGTTTG 544
|||||||||||| |||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 488 GAATCGATGTTAGTTCAATCTTCTCTGTTTCTTCCGTTGATGCGATTTCGAAAGGGTTTG 547
Query 545 ATCTTAAGAGTGGGAGAGAGATGATGGCGTGGATTGAGTATAGTGATGTTCTTAAACTCA 604
||||||| ||||||| | |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 548 ATCTTAAAAGTGGGAAAAAGATGATGGCTTGGATTGAGTATAGTGATGTTCTTAAACTGA 607
Query 605 TTAGGGTTTGGGTTGGGTATTCTCGTGTTAAGCCTACGAGTCCTGTTTTATCAACACAGA 664
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 608 TTAGGGTTTGGGTTGGGTATTCTCGTGTTAAGCCTACTAGTCCTGTTTTATCAACACAGA 667
Query 665 TTGATCTCTCTGGTAAAGTTAAGGAGTATATGCACGTTGGGTTCTCTGCTTCGAATGCTG 724
|||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 668 TTGATCTCTCTGGTAAAGTTAAAGAGTATATGCATGTTGGTTTCTCTGCTTCGAATGCTG 727
Query 725 GTGTTGGGTCAGCTTTGCATATCGTTGAGAGGTGGAAATTTACGACCTTTGAGTCTCATT 784
|| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||||
Sbjct 728 GTATTGGGTCAGCTTTGCATATCGTTGAGCGGTGGAAATTTAGGACCTTTGGGTCTCATT 787
Query 785 CTGATGCGATTCAAG-A-A-GAGGAGGAGAAAGATGAAGAGTGTTTGGTCTGCTCAGGGG 841
||||||||||||||| | | ||||||||||||||||||||||||||||| ||||||||||
Sbjct 788 CTGATGCGATTCAAGAAGAGGAGGAGGAGAAAGATGAAGAGTGTTTGGTTTGCTCAGGGG 847
Query 842 AAGTTTTCGAGAATCCGATGGGAATTCATCGTAAAGGTTTTGGCTTTAGGGTTTCAGTTG 901
|||||| ||| ||||||| || |||||||||||||||||| |||||||||| ||||||
Sbjct 848 AAGTTTCCGAAAATCCGAAGGAAATTCATCGTAAAGGTTTCAACTTTAGGGTTACAGTTG 907
Query 902 TTGGATTTAAGATACCATTTTGGAGTCTTTTACCTGGTATGGCTGCAATTGTTATTCTCG 961
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||| ||||
Sbjct 908 TTGGATTAAAGATACCAGTTTGGAGTCTTTTACCTGGTTTGGCTGCAATTGTTATCCTCG 967
Query 962 TGGCGTTTATTGTTTTCTCATTGATTTCTGGCAAGAAAAGGATTAGTGAAGG-AGCTGAT 1020
||||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 968 TGGCGTTTATTGTTTTCTCATTGATTTGTGGCAAGAAAAGGATTAGTG-AGGAAGCTGAT 1026
Query 1021 ACGAATTCGGGGATTAATAGGATGCCGGGAAGGTTATCCTTGGCTGAGATCAAATCCGCG 1080
||||||||||| || | ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1027 TCGAATTCGGGGCTTGTTCGGATGCCTGGAAGGTTATCCTTGGCTGAGATCAAATCCGCG 1086
Query 1081 ACATCGGGATTCAATGAGAACACAATCGTGGGTCAAGGGGCTTCAGCTACTGTGTACAGA 1140
|| ||||| |||||||||||| ||||||| |||||||| ||||| |||||||| || |||
Sbjct 1087 ACGTCGGGTTTCAATGAGAACGCAATCGTTGGTCAAGGAGCTTCTGCTACTGTCTATAGA 1146
Query 1141 GGCTCTATTCCTTCTATCGGATCAGTGGCCGTGAAGCGCTTTGATCGAGATCACTGGCCA 1200
|||||||||||||| || ||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 1147 GGCTCTATTCCTTCCATTGGATCCGTGGCCGTGAAGCGGTTTGATCGAGAACACTGGCCA 1206
Query 1201 CAGTGCAACCGTAACCCTTTCACCACAGAGTTCACCACAATGACTGGTTACTTGCGGCAC 1260
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CAATGCAACCGTAACCCTTTCACCACAGAGTTCACCACAATGACTGGTTACTTGCGGCAC 1266
Query 1261 AAGAATCTGGTTCAGTTCCAGGGGTGGTGCAGCGAAGGAACAGAGACGGCCTTAGTGTTT 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1267 AAGAATCTGGTTCAGTTCCAGGGGTGGTGCAGCGAAGGAACAGAGACGGCCTTAGTGTTT 1326
Query 1321 GAGTACTTGCCAAACGGAAGTTTAAGTGAATTCCTACACAAGAAACCCTCATCGGATCCA 1380
|||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1327 GAGTACTTACCTAACGGAAGTTTAAGTGAATTCCTACACAAGAAACCCTCATCTGATCCA 1386
Query 1381 TCAGAAGAGTTTATAGTCCTCTCTTGGAAGCAGCGGGTAAACATCATTCTCGGTGTGGCT 1440
||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1387 TCAGAAGAGATCATAGTACTCTCTTGGAAGCAGAGGGTAAACATCATTCTCGGTGTGGCT 1446
Query 1441 TCCGCACTTACTTACCTACACGAAGAATGTGAGAGACAGATCATCCACCGTGACGTCAAG 1500
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 TCCGCACTTACATATCTACACGAAGAATGTGAGAGACAGATCATCCACCGTGACGTCAAG 1506
Query 1501 ACCTGTAACATAATGCTTGATGCCGAGTTTAACGCCAAGCTTGGTGATTTCGGGTTAGCT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1507 ACCTGTAACATAATGCTTGATGCCGAGTTTAACGCCAAGCTTGGTGATTTCGGGTTAGCT 1566
Query 1561 GAGATTTACGAGCACAGTGCGTTGCTAGCTGGACGAGCTGCAACACTCCCAGCAGGTACT 1620
||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1567 GAGATATATGAGCACAGTGCGTTGCTAGCTGGACGAGCTGCTACACTCCCAGCAGGTACT 1626
Query 1621 ATGGGTTACTTGGCACCTGAATACGTGTATACAGGTGTGCCCTCTGAAAAAACCGACGTG 1680
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1627 ATGGGTTACTTGGCACCAGAATACGTGTACACAGGTGTGCCCTCTGAAAAAACAGACGTG 1686
Query 1681 TACAGCTTTGGAGTTGTGGTTCTGGAAGTGTGTACGGGGCGTAGGCCGGTGGGGGATGAC 1740
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1687 TACAGCTTTGGAGTGGTGGTTCTGGAAGTGTGTACGGGGCGTAGGCCGGTGGGGGATGAC 1746
Query 1741 GGGACGGTGCTTGTAGACCTGATGTGGAGCCTCTGGGAGACAGGGAAGGT-CTTGGATGG 1799
||| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1747 GGGGCGGTGCTTGTAGACCTGATGTGGAGCCACTGGGAGACAGGGAAGGTGCT-GGATGG 1805
Query 1800 TGCTGACATCATGCTGAGGGAAGAGTTCGATGCAGAGGAAATGGAAAGGGTGTTGATGGT 1859
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1806 GGCTGACATCATGCTGAGGGAAGAGTTCGATGCAGAGGAAATGGAAAGGGTGTTGATGGT 1865
Query 1860 TGGGATGGTTTGTGCGCATCCTGACTGTGAGAAGCGGCCAAGGGTGAAGGAGGCTGTGAG 1919
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1866 TGGGATGGTTTGTGCGCATCCTGACAGTGAGAAGCGGCCAAGGGTGAAGGATGCTGTGAG 1925
Query 1920 GATTATACGCGGGGAGGCGCCGTTGCCAGTTCTTCCGGCGAGGAGGCCTTTGTTAAGAAT 1979
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1926 GATTATACGCGGGGAGGCGCCGTTGCCAGTTCTTCCGGCGAGGAGGCCTTTGTTGAGAAT 1985
Query 1980 CCGGTCGGCTA-CGGAAGCGGAAGAGATGATTGCCGATGGTTTGGGTCGGGAGGATCTTA 2038
||| |||||| || |||||||||||||||||| ||||||||||| | |||||||||||
Sbjct 1986 CCGACCGGCTAACG-AAGCGGAAGAGATGATTGTCGATGGTTTGGTTGGGGAGGATCTTC 2044
Query 2039 CTTGGATGACGCCTAAATCGCACTTTAGCT 2068
|||||||||| |||||||||||||||||||
Sbjct 2045 CTTGGATGACTCCTAAATCGCACTTTAGCT 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102609913980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5