BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494824
Length=638
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47830.1 | Symbols: | unknown protein; Has 35333 Blast hits... 992 0.0
> AT5G47830.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:19372898-19374311
REVERSE LENGTH=648
Length=648
Score = 992 bits (537), Expect = 0.0
Identities = 607/641 (95%), Gaps = 3/641 (0%)
Strand=Plus/Plus
Query 1 TGCATTACGCCATGAACAGTAATCCCGAGACGGAGATGATGGATACCGACTCCCCCGAGA 60
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||| |
Sbjct 1 TGCATTACGCCATGAACAGTGATCCCGAGACGCAGATGATGGATGCCGACTCCACCGAAA 60
Query 61 CGTTCATGCTCGACAAACCCAGCACCGCCAGAGATTTTCTCTCCGCCGCTCGTAGGCTCG 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 CGTTCATGCTCGACAAACCCAGCACCGCCAGAGATTTCCTCTCCGCCGCTCGTAGGCTCG 120
Query 121 TCGATCAAGGAGAGCCATCTCAAGCTCTTCAAGCGGTCGTGATGGCGATGAGAAACCAAG 180
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TCGATCAAGGAGAACCATCTCAAGCTCTCCAAGCGGTCGTGATGGCGATGAGAAACCAAG 180
Query 181 GAGGAGATGAGGCAGTACTTCAGATATTGAACCGTACCCGTGAACTATACAAGCGTAGAA 240
||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GAGGAGATGAGGCGGTTCTTCAGATACTGAACCGTACCCGTGAACTATACAAGCGTAGAA 240
Query 241 TTCAAGAAACAGCTAGTATGGATCAGCTGGCTTCTATATTTGCCGAGTGTGCCATTACAG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 241 TTCAAGAAACAGCTAGTATGGATCAGCTGGCTTCTATATTTGCAGAGTGTGCCATTACAG 300
Query 301 AAGCACAGCCTCTTGGGC---ATGAGCCAACAACATCAAAAGACTTATTTGGTACCAAAG 357
||||||||||||||| || ||||||| ||||| ||||||||||||||||||||||||
Sbjct 301 AAGCACAGCCTCTTGCGCTTGATGAGCCTACAACGTCAAAAGACTTATTTGGTACCAAAC 360
Query 358 AAACAGTTACAGCGGATGCTCAGGGCATATCTATTCTGGAAAAAAGCGGGAGGTCACAGA 417
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 361 AAACAGTTACAGCAGATGCTCATGGCATATCTATTCTGGAAAAAAGTGGGAGGTCACAGA 420
Query 418 TCATGCTCGACGCCTTTGCTGACGGAAGCAGCTTTATCTGTCTGCAATGCGGTGGTCTGG 477
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 TCATGCTCGATGCCTTTGCTGACGGAAGCAGTTTTATCTGTCTGCAATGCGGTGGTCTGG 480
Query 478 TGAGCATCCATAGGAGAGATGAACACTATGCGTACTGGTGTAGCAATATGTAATACAAGG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGAGCATCCATAGGAGAGATGAACACTATGCGTACTGGTGTAGCAATATGTAATACAAGG 540
Query 538 ATGCTATTTTATAGGCCATTATATGAGAAACTGCGGCATATTGCCTTCGCTGTAATATTG 597
|||||||||| | |||||||| ||||||| |||||||| ||||||||| ||||||||||
Sbjct 541 ATGCTATTTTGTTGGCCATTACATGAGAATCTGCGGCAAATTGCCTTCACTGTAATATTT 600
Query 598 TGTTGCTAAATGTTGTTCAGCTTTGAATGCAATGGGAGATA 638
||||||||||||||||| | ||||||||| |||||||||||
Sbjct 601 TGTTGCTAAATGTTGTTGATCTTTGAATGGAATGGGAGATA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30793532111
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5