BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494828
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47860.1 | Symbols: | Protein of unknown function (DUF1350)... 1929 0.0
> AT5G47860.1 | Symbols: | Protein of unknown function (DUF1350)
| chr5:19381519-19384422 FORWARD LENGTH=1545
Length=1545
Score = 1929 bits (1044), Expect = 0.0
Identities = 1229/1318 (93%), Gaps = 13/1318 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACGTGTTCCCTCTGGGCGTCACCGTCTTTCTCTCCCCGCCGGCGATTCTGTAGC 60
|||||||| |||||||||| | |||||||||| ||||| |||||||||||||||||
Sbjct 138 ATGGCTACATGTTCCCTCTTACCACCACCGTCTTTTTCTCCGCGCCGGCGATTCTGTAGT 197
Query 61 TTTTCTCACAATCGCCCGTCTCTATCTTCAGTGTTCAGTTTCCGCAAAGAGCGTGTCTCA 120
|||||||||||||||| ||||||| ||||| | ||||||||| ||||||||||||||||
Sbjct 198 TTTTCTCACAATCGCCGGTCTCTACCTTCAATATTCAGTTTCAACAAAGAGCGTGTCTCA 257
Query 121 CGAAGAGTCCTT-TGTAGCTACGAGGAGAACG------ACAGAGATCGGACTCAATCTAC 173
|||||||| ||| ||||||| | | ||||||| |||||||||||| ||| |||||
Sbjct 258 CGAAGAGT-CTTCTGTAGCTCCAAAGAGAACGATATAAACAGAGATCGGAATCAGTCTAC 316
Query 174 CGGAATTCAAGTCTACGGCGAGATCGAAAGGTTATTGACAGAGACTGTTAAACAA-TCTC 232
|||||||||||||||||||| ||||| |||||||| |||||||||| |||| || ||||
Sbjct 317 AGGAATTCAAGTCTACGGCGAAATCGAGAGGTTATTAACAGAGACTG-TAAAAAATTCTC 375
Query 233 AGAGTAGTTCCGGTGGATCCTCTGATTGGTCAGAAGTCGAGGGAGCATGGGTGCTTAAAC 292
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 376 AGAGTAGCTCCGGTGGATCCTCTGATTGGTCAGAAGTTGAGGGAGCATGGGTGCTGAAAC 435
Query 293 CAAGAAACTCGAAACCGAAGATGGTTGTTCATTTCATTGGCGGTATATTTGTTGGTGCTG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 436 CAAGAAACTCGAAACCGAAGATGGTTGTTCATTTCATTGGCGGTATATTTGTCGGTGCAG 495
Query 353 CACCACAGCTTACCTATCGATTGTTTCTTGAGAAATTAGCAGAGAAGGATATTTTAGTTA 412
||||||||||||| |||||||||||||| |||| |||||| ||||||||| |||| ||||
Sbjct 496 CACCACAGCTTACTTATCGATTGTTTCTCGAGAGATTAGCGGAGAAGGATGTTTTGGTTA 555
Query 413 TCGCGACACCCTATGCTAGTGGTTTTGACCACTTCAATATTGCAGATGAAGTACAATTTA 472
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 TTGCGACACCATATGCTAGTGGTTTTGACCACTTCAATATTGCAGATGAAGTACAATTTA 615
Query 473 AGTTTGATAGGTGCTGCCGATCTCTACAAGAA-ATAGTGCAGGATCTTCCATCTTTTGGG 531
||| |||||| || |||||||||||||||||| | ||||||||||||||| |||||||||
Sbjct 616 AGTATGATAGATGTTGCCGATCTCTACAAGAAGA-AGTGCAGGATCTTCCGTCTTTTGGG 674
Query 532 ATTGGTCATTCACTGGGATCCGTCATTCACCTTCTGATTGGATCAAGGTATGCCGTTCAG 591
|| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 675 ATCGGTCATTCACTGGGATCTGTTATTCACCTTCTGATTGGATCAAGGTATGCTGTTCAG 734
Query 592 CGAAATGGGAATGTATTTATGGCATTCAATAACAAGGAAGCGAGCTTAGCTATTCCTCTG 651
||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||
Sbjct 735 CGAAATGGGAACGTATTTATGGCATTCAACAACAAGGAAGCAAGCTTAGCTATTCCTTTG 794
Query 652 TTCTCCCCAGTTCTTGTCCCGATGGCCCAAAGACTTGGACCACTGTTATCACAGGTGGCA 711
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 795 TTCTCCCCAGTTCTTGTCCCGATGGCTCAAAGCCTTGGACCACTGTTGTCACAGGTGGCA 854
Query 712 ACATCCCCAACAATCCGCCTTGGGGCAGAGATGACCCGAAAGCAATTAGAAACGCTTAGC 771
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 855 ACATCCCCAACAATCCGCCTTGGGGCAGAGATGACGCGAAAGCAATTAGAAACGCTTAGC 914
Query 772 CCTCCCATCATGAAGCAAATTCTTCCATTAGTGGAACAGCTCCCTCCCTTGTACATGGAC 831
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 915 CCTCCCATCATGAAGCAAATTCTGCCTTTAGTGGAACAGCTCCCTCCCTTGTACATGGAC 974
Query 832 TTAGTAAAGGGTAGAGAAGATTTTATTCCAAAACCAGAAGAAACAAGACGCCTTATAAGA 891
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 975 TTAGTAAAGGGAAGAGAAGATTTTGTTCCAAAACCAGAAGAAACAAGACGCCTTATAAGA 1034
Query 892 TCCTACTATGGAATCTCTAGGAATCTGTTGATAAAGTTTGAGGATGATTCAATAGATGAA 951
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1035 TCCTACTATGGAATCTCTAGGAATCTGTTGATAAAATTCGAGGATGATTCAATAGATGAA 1094
Query 952 ACATCAATCCTAGCTCAGGTGCTTGGTGTGGAATCATCCATAAGCTCAAAGCTAGACATG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 ACATCAATCCTAGCTCAGGTGCTTGGTGTGGAATCATCCATAAGCTCAAAGCTAGACATG 1154
Query 1012 TCTATCCGTACTCTTCCAGGAGATCACGGTCTCCCTCTGCAACAGGCTCTTCCGGATGTT 1071
||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 TCTATCCGTACACTGCCCGGAGATCACGGTCTCCCTCTGCAACAGGCTCTTCCGGATGTT 1214
Query 1072 CCACCAGGAATGGCAGAAGCAGTGAACCGAGGAAGTGAGTTTTTAGCAAATATTGCTGTT 1131
|||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||
Sbjct 1215 CCACCAGGAATGGCAGAAGCGGTGAATCGAGGAAGTGAGTTTTTAGCGAATATTGCTGTC 1274
Query 1132 GGGACTCCATGGGAATCTATGGCTAAAGAGGTTGGAGGCTCGCTGGGAATGGACTCGAAG 1191
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1275 GGGACTCCGTGGGAATCTATGGCTAAAGAGGTTGGAGGTTCGCTGGGAATGGACTCGAAG 1334
Query 1192 ATCCTTCGTGCTGACAAGTCCAAAGACCTTGCGCAGCTCATCGATGCAATCACTTCTTGG 1251
|||||||||||||||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1335 ATCCTTCGTGCTGACATGTCCAAAGATCTTGCGCAGCTCGTTGATGCAATCACTTCTTGG 1394
Query 1252 ATGGCTTCAAATATGGGTCCAAAACTTCTGAGACCATAATGTTT-CTCATGTACACAA 1308
||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1395 ATGATTTCAAATATGGGTCCAAAGCTTCTGAGACCATAATGTTTTCTCATGTACACAA 1452
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5