BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494829
Length=853
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47870.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1181 0.0
> AT5G47870.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: cobalt ion binding (TAIR:AT1G71310.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink). | chr5:19384368-19385869
REVERSE LENGTH=848
Length=848
Score = 1181 bits (639), Expect = 0.0
Identities = 791/859 (92%), Gaps = 32/859 (4%)
Strand=Plus/Plus
Query 3 CTTCTCATGTTTTCCTCTT----AACTCACAGTTTTGCTCCGACACGAAATCAATGGCTT 58
|||||| |||||||||||| ||||| || |||||||| |||| |||||||||||||
Sbjct 9 CTTCTCCTGTTTTCCTCTTCCCCAACTCTCAATTTTGCTCAGACAAAAAATCAATGGCTT 68
Query 59 TGCAAATGCAGCAGACCTCAACGGCCTTCACAATCTCCGCACCATCCACCGCCGCTGCAC 118
||||| ||||||| || ||| | ||||||||||||||| |||||||||||||||||||||
Sbjct 69 TGCAAGTGCAGCAAACTTCAGCAGCCTTCACAATCTCCTCACCATCCACCGCCGCTGCAC 128
Query 119 GCATCAAACTCTCCCCTTTCAGAACCGTGGCGGTTCGCCGGTTAACGGCGAATCGCGGAG 178
|||||||||||||||||||||||||||| | | ||||||| | |||||||
Sbjct 129 GCATCAAACTCTCCCCTTTCAGAACCGT----G---G-CGGTTAA---C----CGCGGAG 173
Query 179 TTAGATGCAGCGGCGGGGGAGTAGGAGTCGGAGGTGGAGACGTGGGGAAGAAAAAAGCAG 238
|||||||||||||| | || ||||||||||| ||||| | ||||||||||||||||
Sbjct 174 TTAGATGCAGCGGC----G-GT-GGAGTCGGAGGCGGAGATGCCGGGAAGAAAAAAGCAG 227
Query 239 TTCCTAATTCGAATTATGTAGTTCCTATTGACAAATTCTCGTCGTCTTCGTCGATTACTA 298
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 228 TTCCTAATTCGAATTATGTAGTTCCTATTGACAAATTCTCGTCTTCTTCGTCGATTACTA 287
Query 299 GGCCTTTGATTGAGATACTTCGTGACCTTAACAAAAAGATTCCTGATAACATTGTTAAGA 358
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 288 GGCCTTTGATTGAGATACTTCGTGACCTTAATAAGAAGATTCCTGATAACATTGTTAAGA 347
Query 359 GTCATGATCCTCCCTCTACTTCTGCTG---CTTCTGGTTTTATCCCTTGGTACCATGCAA 415
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 348 GTCATGATCCTCCTTCTACTTCTGCTGCTACTTCTGGTTTTATCCCTTGGTACCATGCAA 407
Query 416 ATCGGATGCTTAGCTTCTATGCTCCTGGTTGGTGTGGTGAAGTTAGAGATGTTATTTTCT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 ATCGGATGCTTAGCTTCTATGCTCCTGGTTGGTGTGGTGAAGTTAGAGATGTTATTTTCT 467
Query 476 CTGAGAATGGTAATGTTACTGTTGTTTATCGTCTCACCATTCGTGGCTCTGATGGTGAGG 535
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 468 CTGAGAATGGAAATGTTACTGTTGTTTATCGTCTCACTATTCGTGGCTCTGATGGTGAGG 527
Query 536 CACATCGTGAATCCACTGGGACAGTAACGACGACTGATGATCACATTGAGGATCCAGTTA 595
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 528 CACATCGTGAATCAACTGGGACAGTAACGACGACTGATGATCACATCGAGGATCCAGTTA 587
Query 596 CTGCAGCTGAGGAAATAGCATTCTGCAGAGCATGTGCACGATTTGGTCTCGGCTTGTATC 655
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 588 CTGCAGCTGAGGAAATAGCATTCTGCAGAGCATGTGCTCGATTTGGTCTCGGCTTGTATC 647
Query 656 TATACCACGAATAGTTCACCGATCATATCAAGTGTGCTTACTGTTTTTCAAGACCCTCAA 715
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 648 TATACCACGAATAGTTCACCGATCATATCAAGTTTCCTTACTGTTTTTCAAGACCCTCAA 707
Query 716 TTCTGTTATCTGTTTGTTATTTCTTCCTTCTTTTTGACATCCTTGTGTGATCTAGGGTAC 775
||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| ||||
Sbjct 708 TTCCGTGATCTGTTTGTTTTTTCTTCCTTCTTTTTGACATCCTTGTGTTATCTAGAGTAC 767
Query 776 CAAAACATGCTATCGACAGGAGTTTTTATGTATAACCAAACTCTTCATGTtatatatata 835
|||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 CAAAACATGCAATTAACAGGAGTTTTTATGTATAACCAAACTCTTCATGTTATA-ATATA 826
Query 836 tata-t-aCAGTTACATTA 852
|| | | ||| ||||||||
Sbjct 827 TACAGTTACA-TTACATTA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41593873716
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5