BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494831
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47880.1 | Symbols: ERF1-1 | eukaryotic release factor 1-1 |... 2290 0.0
AT1G12920.1 | Symbols: ERF1-2 | eukaryotic release factor 1-2 |... 891 0.0
> AT5G47880.1 | Symbols: ERF1-1 | eukaryotic release factor 1-1
| chr5:19386100-19388562 REVERSE LENGTH=1767
Length=1767
Score = 2290 bits (1240), Expect = 0.0
Identities = 1400/1479 (95%), Gaps = 3/1479 (0%)
Strand=Plus/Plus
Query 1 ATACAATAAAGAATAGAAAAAGTTGTCCAAGGCTTGAGCGTTGTTCCTTCTTTCTTCAGG 60
||||| ||||||||| || |||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATACAGTAAAGAATATAATAAGTTGTCGAAGGCTTGAGCGTTGTTCCTTC-TTCTTCAGG 59
Query 61 TTTTTGTTCTATTGTTAAGATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTTTTGTTCTATTGTTAAGATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATG 119
Query 121 GAAGATTAAGAAGCTGATCAAATCCCTTGAAGCTGCTAGGGGTAATGGAACTAGCATGAT 180
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 120 GAAGATTAAGAAGCTGATCAAATCACTTGAAGCTGCTAGGGGTAATGGAACCAGCATGAT 179
Query 181 CTCTCTTATCATGCCTCCACGTGATCAGGTCTCTCGTGTTACTAAGATGTTGGGTGATGA 240
||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 CTCACTCATCATGCCTCCGCGTGATCAGGTCTCTCGTGTTACCAAGATGTTGGGTGATGA 239
Query 241 GTATGGAACTGCGTCGAACATCAAGAGCAGAGTCAATCGCCAGTCTGTTTTGGGTGCCAT 300
||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 240 GTATGGAACCGCGTCAAACATCAAGAGCAGAGTCAATCGTCAATCTGTTTTGGGGGCCAT 299
Query 301 AACATCTGCTCAGCAAAGGCTGAAACTTTATAACAGGGTCCCTCCTAATGGTCTTGTGCT 360
||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 300 AACTTCTGCTCAGCAAAGGTTGAAACTTTACAACAGGGTCCCTCCTAATGGTCTTGTACT 359
Query 361 ATATACCGGAACCATTGTGAATGAGGAAGGTAAGGAGAAGAAGGTTACTATTGACTTTGA 420
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 CTATACTGGAACCATTGTTAATGAGGATGGTAAGGAGAAGAAGGTTACTATTGACTTTGA 419
Query 421 GCCTTTCAGACCCATCAATGCTTCTCTCTACCTCTGTGACAACAAGTTTCATACGGAAGC 480
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 420 GCCTTTCAGACCCATCAATGCTTCTCTCTACCTTTGTGACAACAAGTTTCACACGGAAGC 479
Query 481 TTTGAATGAATTGCTGGAGTCTGATGACAAGTTTGGCTTCATTGTAATGGATGGAAACGG 540
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 TTTGAATGAATTGTTGGAGTCTGATGACAAGTTTGGTTTCATTGTAATGGATGGAAACGG 539
Query 541 GACTCTCTTTGGAACTCTGAGTGGTAATACCCGTGAGGTGCTTCACAAGTTCTCTGTTGA 600
|||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 540 GACTCTCTTTGGAACTCTTAGTGGTAACACCCGTGAGGTACTTCACAAGTTCTCTGTTGA 599
Query 601 TCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTAT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTAT 659
Query 661 GGAGAAGCGTCACAATTATGTGAGGAAGACCGCTGAGCTCGCCACGCAGTACTACATCAA 720
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 660 GGAGAAGCGTCACAATTATGTTAGGAAGACTGCTGAGCTCGCCACACAGTACTACATCAA 719
Query 721 TCCTGCAACAAGTCAGCCGAATGTGTCTGGGCTAATACTTGCCGGTTCAGCAGATTTCAA 780
|||||| ||||||||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 720 TCCTGCTACAAGTCAGCCTAATGTGTCTGGACTGATTCTTGCTGGTTCAGCAGATTTCAA 779
Query 781 GACTGAGTTGAGTCAGTCAGATATGTTTGATCCCCGGCTGGGTGCGAAGATACTGAATGT 840
|||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||
Sbjct 780 GACTGAGTTGAGTCAGTCTGATATGTTTGATCCCCGACTGGCTGCGAAGATACTGAATGT 839
Query 841 CGTGGATGTATCGTATGGAGGAGAAAATGGTTTCAATCAGGCTATTGAGCTGTCAGCTGA 900
||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 840 GGTGGATGTATCATATGGAGGAGAAAATGGTTTTAATCAAGCTATTGAGCTGTCAGCTGA 899
Query 901 AATTCTGGCGAATGTGAAGTTCATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGA 960
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 900 AATCCTTGCGAATGTGAAGTTTATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGA 959
Query 961 GATAAGCCAGGACACAGGGAAGTATGTGTTTGGTGTGGAAGATACATTGAATGCTTTGGA 1020
||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 960 GATAAGCCAGGACACGGGGAAGTATGTGTTTGGTGTGGAAGATACGTTGAACGCTTTGGA 1019
Query 1021 GTCGGGTGCTATAGAGACGCTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGAT 1080
||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTCTGGTGCTATTGAGACACTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGAT 1079
Query 1081 GAAGAACAGTGCGACTGGTGAAACTGTGATCAAGCACCTGAACAAGGAACAGGAAGCCAA 1140
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1080 GAAGAACAGTGCGACTGGTGAAACTGTGATCAAACACCTGAACAAGGAACAAGAAGCCAA 1139
Query 1141 CACGGAGAATTTCAAAGTAAGC-GACAGCGACTTGGCTTTGGATGTGGAGGAGAAGCTGT 1199
||| ||||| ||||||||| || ||||| |||||||||||||| ||||||||||||||||
Sbjct 1140 CACTGAGAACTTCAAAGTA-GCCGACAGTGACTTGGCTTTGGACGTGGAGGAGAAGCTGT 1198
Query 1200 CGTTACTGGAGTGGCTGGCGAACGAGTACAGGCGTTTTGGTTGTGCGCTAGAGTTTGTGA 1259
|||||||||||||||| || || |||||||||||||||||||||||| ||||||||||||
Sbjct 1199 CGTTACTGGAGTGGCTTGCCAATGAGTACAGGCGTTTTGGTTGTGCGTTAGAGTTTGTGA 1258
Query 1260 CGAACAAATCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATAC 1319
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCAACAAGTCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATAC 1318
Query 1320 TTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGATTTTGTTGATGATG 1379
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1319 TTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGAAGCTCTTGATGATG 1378
Query 1380 ATTCGGAATAACAATCAATCAAATCCTCACCATCGCTGGTTGGGGAAGATGGCACACTGC 1439
||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1379 ATTCGGAATGACAATCAATCAAATCCTCACCATCGCTGGTTGGGGAAGATGGCGCTCCGC 1438
Query 1440 CATGCCTGAACCAGCCTGCGCGGGCTGTCGGGGTCGCGC 1478
||||||||||||||| |||||||||||||||||||||||
Sbjct 1439 CATGCCTGAACCAGCTTGCGCGGGCTGTCGGGGTCGCGC 1477
Score = 163 bits (88), Expect = 5e-39
Identities = 124/140 (89%), Gaps = 8/140 (6%)
Strand=Plus/Plus
Query 1579 AGGTGGA-GAATGAAGGAACATGTGGAGAGTGAAGTAGCCTT--CTTGGGTAACGTTGTT 1635
|||| || ||||||||||||||||||||||||||| |||||| ||| |||| |||||||
Sbjct 1518 AGGT-GATGAATGAAGGAACATGTGGAGAGTGAAGAAGCCTTGGCTTTGGTAGCGTTGTT 1576
Query 1636 GGTGTTT-G-CAT--ATGGAGTTTTCTTTTGAGTTGGTGTTTCTTTAATAATTTACATTG 1691
|||| | | ||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1577 GGTGCCTAGACATTTATGGAGTTTTATTTTGAGTTGGTGTTTCTTTAATAATTTACTTTG 1636
Query 1692 GTCAGTTTTATTTCAGTATT 1711
|||||||||||||||| |||
Sbjct 1637 GTCAGTTTTATTTCAGAATT 1656
> AT1G12920.1 | Symbols: ERF1-2 | eukaryotic release factor 1-2
| chr1:4396348-4398193 REVERSE LENGTH=1656
Length=1656
Score = 891 bits (482), Expect = 0.0
Identities = 1007/1258 (80%), Gaps = 46/1258 (4%)
Strand=Plus/Plus
Query 106 GAACATTGAGATATGGAAGATTAAGAAGCTGATCAAATCCCTTGAAGCTGCTAGGGGTAA 165
|||||| ||||| |||||||||||||| || ||||| |||||| | ||||| |||||
Sbjct 165 GAACATCGAGATCTGGAAGATTAAGAAACTAATCAAGGGACTTGAATCAGCTAGAGGTAA 224
Query 166 TGGAACTAGCATGATCTCTCTTATCATGCCTCCACGTGATCAGGTCTCTCGTGTTACTAA 225
|||||| || |||||||||||||| |||||||| |||||||| || |||||||| || ||
Sbjct 225 TGGAACGAGTATGATCTCTCTTATTATGCCTCCTCGTGATCAAGTATCTCGTGTCACAAA 284
Query 226 GATG-TTGGGTGATGAGTATGGAACTGCGTCGAACATCAAGAG-CAGAGTCAATCGCCAG 283
|||| || |||||||| ||||||||||| || ||||| ||||| | |||||||||| ||
Sbjct 285 GATGCTT-GGTGATGAATATGGAACTGCTTCAAACATTAAGAGTC-GAGTCAATCGTCAA 342
Query 284 TCTGTTTTGGGTGCCATAACATCTGCTCAGCAAAGGCTGAAACTTTATAACAGGGTCCCT 343
||||||||| |||||| || |||||||| |||||| |||| ||||| |||| ||| |||
Sbjct 343 TCTGTTTTGTCTGCCATTACTTCTGCTCAACAAAGGTTGAAGCTTTACAACAAGGTTCCT 402
Query 344 CCTAATGGTCTTGTGCTATATACCGGAACCATTGTGAATGAGGAAGGTAAGGAGAAGAAG 403
||||||||||||| || |||||||| |||||||| ||||| || ||||| |||||||||
Sbjct 403 ACTAATGGTCTTGTTCTCTATACCGGCACCATTGTTAATGATGACGGTAAAGAGAAGAAG 462
Query 404 GTTAC-TATTGACTTT-GAG-CCTTTCAGACCCATCAATGCTT-CTCTCTACCTCTGTGA 459
|| || | |||| ||| ||| ||||| || || || ||||||| || | ||||| |||||
Sbjct 463 GTGACGT-TTGA-TTTCGAGCCCTTT-AGGCCGATTAATGCTTCCT-TGTACCTTTGTGA 518
Query 460 CAACAAGTTTCATACGGAAGCTTTGAATGA-ATTGCTGGAGTCTGATGACAAGTTTGGCT 518
||||||||| ||||| || || ||||| || || || |||||||||||||||||||| |
Sbjct 519 CAACAAGTTCCATACTGAGGCATTGAACGAGCTT-CTTGAGTCTGATGACAAGTTTGGTT 577
Query 519 TCATTGTAATGGATGGAAACGGGACTCTCTTTGGAACTCTGAGTGGTAATACCCGTGAGG 578
||||||| |||||||| || ||||| || ||||||||| ||||||| ||||| | ||||
Sbjct 578 TCATTGTTATGGATGGTAATGGGACACTGTTTGGAACTTTGAGTGGGAATACTAGAGAGG 637
Query 579 TGCTTCACAAGTTCT-CTGTTGATCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCT 637
| ||||| ||||| | |||||||||| |||||||| |||||||||||||||||||||||
Sbjct 638 TTCTTCATAAGTT-TACTGTTGATCTCCCGAAGAAGCACGGAAGAGGAGGACAGTCTGCA 696
Query 638 CTTCGTTTTGCCCGTCTCCGTATGGAGAAGCGTCACAATTATGTGAGGAAGACCGCTGAG 697
||||||||||||||||| | ||||||||| | ||||||||||| ||||| |||||||||
Sbjct 697 CTTCGTTTTGCCCGTCTTAGGATGGAGAAGAGACACAATTATGTTAGGAAAACCGCTGAG 756
Query 698 CTCGCCACGCAGTACTACATCAATCCTGCAACAAGTCAGCCGAATGTGTCTGGGCTAATA 757
|| || || |||| ||||||||||| || || |||||||| ||||| ||||| || ||
Sbjct 757 CTTGCTACACAGTTTTACATCAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTGATC 816
Query 758 CTTGCCGGTTCAGCAGATTTCAAGACTGAGTTGAGTCAGTCAGA-TATGTTTGATCCCCG 816
||||| |||||||| |||||||| |||||| | ||||| ||||| | |||||||||| ||
Sbjct 817 CTTGCTGGTTCAGCTGATTTCAAAACTGAGCTCAGTCAATCAGAGT-TGTTTGATCCTCG 875
Query 817 GCTGGGTGCGAAGATACTGAATGTCGTGGATGTATCGTATGGAGGAGAAAATGGTTTCAA 876
|| || |||||| ||||||| || ||||| || || ||||| ||||| ||||||||
Sbjct 876 TCTTCAAGCTAAGATATTGAATGTTGTTGATGTTTCTTACGGAGGTGAAAACGGTTTCAA 935
Query 877 TCAGGCTATTGAGCTGTCAGCTGAAATTCTGGCGAATGTGAAGTTCATCCAAGAGAAGCG 936
|| || ||||||||||| ||||| ||||| | |||||||||||||| || ||||||
Sbjct 936 CCAAGCGATTGAGCTGTCTGCTGAGATTCTATCCAATGTGAAGTTCATACAGGAGAAGAA 995
Query 937 TCTGATTGGGAAGTACTTTGAGGAGATAAGCCAGGACACAGGGAAGTATGTGTTT-GGTG 995
||||||||||||||||||||||||||||| || || || ||||| || || ||| ||||
Sbjct 996 ACTGATTGGGAAGTACTTTGAGGAGATAAGTCAAGATACCGGGAAATACGT-TTTCGGTG 1054
Query 996 TGGAAGATACAT-TGAATGCTTTGGAG-TCGGGTGCTATAGAGACGCTGATTGTATGGGA 1053
|||| ||||| | | || ||| | || | ||||||||| || || || || || |||||
Sbjct 1055 TGGAGGATAC-TCTAAAGGCTCTAGAAAT-GGGTGCTATCGAAACCCTTATCGTGTGGGA 1112
Query 1054 AAATCTCGATATCAACAGATATGTGATGAAGAACAGTGCGACTGGTGAAACTG-TGATCA 1112
||||| || || ||||| |||| | | ||||||||| |||| || |||| || || | |
Sbjct 1113 GAATCTGGACATAAACAGGTATGAGCTAAAGAACAGTACGACAGGAGAAA-TGGTGGTGA 1171
Query 1113 AGCACCT-GA-ACAAGGAACAGGAAGCCA-ACACGGAG-AATTTCAAAG-TA-AGCGAC- 1165
| ||| | | | ||| | || || | | | || || || ||| | | | || |||
Sbjct 1172 AACACTTTGGGA-AAG-ATCAAGA-GTCTGATACA-AGCAACTTCCATGATTCAGAGACT 1227
Query 1166 AGCGACTTG-GCTTTGGATGTGGAGGAGAAGCTGTCGT-TACTGGAGTGGCTGGCGAACG 1223
| || | | ||| | | || |||||||| || | | |||| || ||| | || || |
Sbjct 1228 AACG-CG-GAGCTA-GAA-GTACAGGAGAAGATGCC-TCTACTCGAATGGTTTGCAAATG 1282
Query 1224 AGTACAGGCGTTTTGGTTGTGCGCTAGAGTTTGTGACGAACAAATCACAGGAAGGTTCTC 1283
|||||| ||||| || || | || ||||||||||| |||||||| || ||||| || |
Sbjct 1283 AGTACAAACGTTTCGGCTGCACTCTTGAGTTTGTGACTAACAAATCCCAAGAAGGGTCAC 1342
Query 1284 AGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATACTT-CGTTACCAGCTTGACATGA 1340
||||||||||||| ||||| || || || || || || |||||||||||||||||||
Sbjct 1343 AGTTTTGCAGAGGTTTTGGTGGGATTGGTGGTATG-TTACGTTACCAGCTTGACATGA 1399
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84587918325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5