BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494831 Length=1711 Score E Sequences producing significant alignments: (Bits) Value AT5G47880.1 | Symbols: ERF1-1 | eukaryotic release factor 1-1 |... 2290 0.0 AT1G12920.1 | Symbols: ERF1-2 | eukaryotic release factor 1-2 |... 891 0.0 > AT5G47880.1 | Symbols: ERF1-1 | eukaryotic release factor 1-1 | chr5:19386100-19388562 REVERSE LENGTH=1767 Length=1767 Score = 2290 bits (1240), Expect = 0.0 Identities = 1400/1479 (95%), Gaps = 3/1479 (0%) Strand=Plus/Plus Query 1 ATACAATAAAGAATAGAAAAAGTTGTCCAAGGCTTGAGCGTTGTTCCTTCTTTCTTCAGG 60 ||||| ||||||||| || |||||||| |||||||||||||||||||||| ||||||||| Sbjct 1 ATACAGTAAAGAATATAATAAGTTGTCGAAGGCTTGAGCGTTGTTCCTTC-TTCTTCAGG 59 Query 61 TTTTTGTTCTATTGTTAAGATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TTTTTGTTCTATTGTTAAGATGGGAGACAAAAACGATGACGACAAGAACATTGAGATATG 119 Query 121 GAAGATTAAGAAGCTGATCAAATCCCTTGAAGCTGCTAGGGGTAATGGAACTAGCATGAT 180 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 120 GAAGATTAAGAAGCTGATCAAATCACTTGAAGCTGCTAGGGGTAATGGAACCAGCATGAT 179 Query 181 CTCTCTTATCATGCCTCCACGTGATCAGGTCTCTCGTGTTACTAAGATGTTGGGTGATGA 240 ||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 180 CTCACTCATCATGCCTCCGCGTGATCAGGTCTCTCGTGTTACCAAGATGTTGGGTGATGA 239 Query 241 GTATGGAACTGCGTCGAACATCAAGAGCAGAGTCAATCGCCAGTCTGTTTTGGGTGCCAT 300 ||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 240 GTATGGAACCGCGTCAAACATCAAGAGCAGAGTCAATCGTCAATCTGTTTTGGGGGCCAT 299 Query 301 AACATCTGCTCAGCAAAGGCTGAAACTTTATAACAGGGTCCCTCCTAATGGTCTTGTGCT 360 ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| || Sbjct 300 AACTTCTGCTCAGCAAAGGTTGAAACTTTACAACAGGGTCCCTCCTAATGGTCTTGTACT 359 Query 361 ATATACCGGAACCATTGTGAATGAGGAAGGTAAGGAGAAGAAGGTTACTATTGACTTTGA 420 ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 360 CTATACTGGAACCATTGTTAATGAGGATGGTAAGGAGAAGAAGGTTACTATTGACTTTGA 419 Query 421 GCCTTTCAGACCCATCAATGCTTCTCTCTACCTCTGTGACAACAAGTTTCATACGGAAGC 480 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 420 GCCTTTCAGACCCATCAATGCTTCTCTCTACCTTTGTGACAACAAGTTTCACACGGAAGC 479 Query 481 TTTGAATGAATTGCTGGAGTCTGATGACAAGTTTGGCTTCATTGTAATGGATGGAAACGG 540 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 480 TTTGAATGAATTGTTGGAGTCTGATGACAAGTTTGGTTTCATTGTAATGGATGGAAACGG 539 Query 541 GACTCTCTTTGGAACTCTGAGTGGTAATACCCGTGAGGTGCTTCACAAGTTCTCTGTTGA 600 |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 540 GACTCTCTTTGGAACTCTTAGTGGTAACACCCGTGAGGTACTTCACAAGTTCTCTGTTGA 599 Query 601 TCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTAT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCTCTTCGTTTTGCCCGTCTCCGTAT 659 Query 661 GGAGAAGCGTCACAATTATGTGAGGAAGACCGCTGAGCTCGCCACGCAGTACTACATCAA 720 ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| Sbjct 660 GGAGAAGCGTCACAATTATGTTAGGAAGACTGCTGAGCTCGCCACACAGTACTACATCAA 719 Query 721 TCCTGCAACAAGTCAGCCGAATGTGTCTGGGCTAATACTTGCCGGTTCAGCAGATTTCAA 780 |||||| ||||||||||| ||||||||||| || || ||||| ||||||||||||||||| Sbjct 720 TCCTGCTACAAGTCAGCCTAATGTGTCTGGACTGATTCTTGCTGGTTCAGCAGATTTCAA 779 Query 781 GACTGAGTTGAGTCAGTCAGATATGTTTGATCCCCGGCTGGGTGCGAAGATACTGAATGT 840 |||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| Sbjct 780 GACTGAGTTGAGTCAGTCTGATATGTTTGATCCCCGACTGGCTGCGAAGATACTGAATGT 839 Query 841 CGTGGATGTATCGTATGGAGGAGAAAATGGTTTCAATCAGGCTATTGAGCTGTCAGCTGA 900 ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 840 GGTGGATGTATCATATGGAGGAGAAAATGGTTTTAATCAAGCTATTGAGCTGTCAGCTGA 899 Query 901 AATTCTGGCGAATGTGAAGTTCATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGA 960 ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 900 AATCCTTGCGAATGTGAAGTTTATCCAAGAGAAGCGTCTGATTGGGAAGTACTTTGAGGA 959 Query 961 GATAAGCCAGGACACAGGGAAGTATGTGTTTGGTGTGGAAGATACATTGAATGCTTTGGA 1020 ||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 960 GATAAGCCAGGACACGGGGAAGTATGTGTTTGGTGTGGAAGATACGTTGAACGCTTTGGA 1019 Query 1021 GTCGGGTGCTATAGAGACGCTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGAT 1080 ||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GTCTGGTGCTATTGAGACACTGATTGTATGGGAAAATCTCGATATCAACAGATATGTGAT 1079 Query 1081 GAAGAACAGTGCGACTGGTGAAACTGTGATCAAGCACCTGAACAAGGAACAGGAAGCCAA 1140 ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1080 GAAGAACAGTGCGACTGGTGAAACTGTGATCAAACACCTGAACAAGGAACAAGAAGCCAA 1139 Query 1141 CACGGAGAATTTCAAAGTAAGC-GACAGCGACTTGGCTTTGGATGTGGAGGAGAAGCTGT 1199 ||| ||||| ||||||||| || ||||| |||||||||||||| |||||||||||||||| Sbjct 1140 CACTGAGAACTTCAAAGTA-GCCGACAGTGACTTGGCTTTGGACGTGGAGGAGAAGCTGT 1198 Query 1200 CGTTACTGGAGTGGCTGGCGAACGAGTACAGGCGTTTTGGTTGTGCGCTAGAGTTTGTGA 1259 |||||||||||||||| || || |||||||||||||||||||||||| |||||||||||| Sbjct 1199 CGTTACTGGAGTGGCTTGCCAATGAGTACAGGCGTTTTGGTTGTGCGTTAGAGTTTGTGA 1258 Query 1260 CGAACAAATCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATAC 1319 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 CCAACAAGTCACAGGAAGGTTCTCAGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATAC 1318 Query 1320 TTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGATTTTGTTGATGATG 1379 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1319 TTCGTTACCAGCTTGACATGACTGCCTTTGATTCCGAGGATGGAGAAGCTCTTGATGATG 1378 Query 1380 ATTCGGAATAACAATCAATCAAATCCTCACCATCGCTGGTTGGGGAAGATGGCACACTGC 1439 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| | | || Sbjct 1379 ATTCGGAATGACAATCAATCAAATCCTCACCATCGCTGGTTGGGGAAGATGGCGCTCCGC 1438 Query 1440 CATGCCTGAACCAGCCTGCGCGGGCTGTCGGGGTCGCGC 1478 ||||||||||||||| ||||||||||||||||||||||| Sbjct 1439 CATGCCTGAACCAGCTTGCGCGGGCTGTCGGGGTCGCGC 1477 Score = 163 bits (88), Expect = 5e-39 Identities = 124/140 (89%), Gaps = 8/140 (6%) Strand=Plus/Plus Query 1579 AGGTGGA-GAATGAAGGAACATGTGGAGAGTGAAGTAGCCTT--CTTGGGTAACGTTGTT 1635 |||| || ||||||||||||||||||||||||||| |||||| ||| |||| ||||||| Sbjct 1518 AGGT-GATGAATGAAGGAACATGTGGAGAGTGAAGAAGCCTTGGCTTTGGTAGCGTTGTT 1576 Query 1636 GGTGTTT-G-CAT--ATGGAGTTTTCTTTTGAGTTGGTGTTTCTTTAATAATTTACATTG 1691 |||| | | ||| |||||||||| |||||||||||||||||||||||||||||| ||| Sbjct 1577 GGTGCCTAGACATTTATGGAGTTTTATTTTGAGTTGGTGTTTCTTTAATAATTTACTTTG 1636 Query 1692 GTCAGTTTTATTTCAGTATT 1711 |||||||||||||||| ||| Sbjct 1637 GTCAGTTTTATTTCAGAATT 1656 > AT1G12920.1 | Symbols: ERF1-2 | eukaryotic release factor 1-2 | chr1:4396348-4398193 REVERSE LENGTH=1656 Length=1656 Score = 891 bits (482), Expect = 0.0 Identities = 1007/1258 (80%), Gaps = 46/1258 (4%) Strand=Plus/Plus Query 106 GAACATTGAGATATGGAAGATTAAGAAGCTGATCAAATCCCTTGAAGCTGCTAGGGGTAA 165 |||||| ||||| |||||||||||||| || ||||| |||||| | ||||| ||||| Sbjct 165 GAACATCGAGATCTGGAAGATTAAGAAACTAATCAAGGGACTTGAATCAGCTAGAGGTAA 224 Query 166 TGGAACTAGCATGATCTCTCTTATCATGCCTCCACGTGATCAGGTCTCTCGTGTTACTAA 225 |||||| || |||||||||||||| |||||||| |||||||| || |||||||| || || Sbjct 225 TGGAACGAGTATGATCTCTCTTATTATGCCTCCTCGTGATCAAGTATCTCGTGTCACAAA 284 Query 226 GATG-TTGGGTGATGAGTATGGAACTGCGTCGAACATCAAGAG-CAGAGTCAATCGCCAG 283 |||| || |||||||| ||||||||||| || ||||| ||||| | |||||||||| || Sbjct 285 GATGCTT-GGTGATGAATATGGAACTGCTTCAAACATTAAGAGTC-GAGTCAATCGTCAA 342 Query 284 TCTGTTTTGGGTGCCATAACATCTGCTCAGCAAAGGCTGAAACTTTATAACAGGGTCCCT 343 ||||||||| |||||| || |||||||| |||||| |||| ||||| |||| ||| ||| Sbjct 343 TCTGTTTTGTCTGCCATTACTTCTGCTCAACAAAGGTTGAAGCTTTACAACAAGGTTCCT 402 Query 344 CCTAATGGTCTTGTGCTATATACCGGAACCATTGTGAATGAGGAAGGTAAGGAGAAGAAG 403 ||||||||||||| || |||||||| |||||||| ||||| || ||||| ||||||||| Sbjct 403 ACTAATGGTCTTGTTCTCTATACCGGCACCATTGTTAATGATGACGGTAAAGAGAAGAAG 462 Query 404 GTTAC-TATTGACTTT-GAG-CCTTTCAGACCCATCAATGCTT-CTCTCTACCTCTGTGA 459 || || | |||| ||| ||| ||||| || || || ||||||| || | ||||| ||||| Sbjct 463 GTGACGT-TTGA-TTTCGAGCCCTTT-AGGCCGATTAATGCTTCCT-TGTACCTTTGTGA 518 Query 460 CAACAAGTTTCATACGGAAGCTTTGAATGA-ATTGCTGGAGTCTGATGACAAGTTTGGCT 518 ||||||||| ||||| || || ||||| || || || |||||||||||||||||||| | Sbjct 519 CAACAAGTTCCATACTGAGGCATTGAACGAGCTT-CTTGAGTCTGATGACAAGTTTGGTT 577 Query 519 TCATTGTAATGGATGGAAACGGGACTCTCTTTGGAACTCTGAGTGGTAATACCCGTGAGG 578 ||||||| |||||||| || ||||| || ||||||||| ||||||| ||||| | |||| Sbjct 578 TCATTGTTATGGATGGTAATGGGACACTGTTTGGAACTTTGAGTGGGAATACTAGAGAGG 637 Query 579 TGCTTCACAAGTTCT-CTGTTGATCTTCCGAAGAAACACGGAAGAGGAGGACAGTCTGCT 637 | ||||| ||||| | |||||||||| |||||||| ||||||||||||||||||||||| Sbjct 638 TTCTTCATAAGTT-TACTGTTGATCTCCCGAAGAAGCACGGAAGAGGAGGACAGTCTGCA 696 Query 638 CTTCGTTTTGCCCGTCTCCGTATGGAGAAGCGTCACAATTATGTGAGGAAGACCGCTGAG 697 ||||||||||||||||| | ||||||||| | ||||||||||| ||||| ||||||||| Sbjct 697 CTTCGTTTTGCCCGTCTTAGGATGGAGAAGAGACACAATTATGTTAGGAAAACCGCTGAG 756 Query 698 CTCGCCACGCAGTACTACATCAATCCTGCAACAAGTCAGCCGAATGTGTCTGGGCTAATA 757 || || || |||| ||||||||||| || || |||||||| ||||| ||||| || || Sbjct 757 CTTGCTACACAGTTTTACATCAATCCAGCTACGAGTCAGCCTAATGTCTCTGGTCTGATC 816 Query 758 CTTGCCGGTTCAGCAGATTTCAAGACTGAGTTGAGTCAGTCAGA-TATGTTTGATCCCCG 816 ||||| |||||||| |||||||| |||||| | ||||| ||||| | |||||||||| || Sbjct 817 CTTGCTGGTTCAGCTGATTTCAAAACTGAGCTCAGTCAATCAGAGT-TGTTTGATCCTCG 875 Query 817 GCTGGGTGCGAAGATACTGAATGTCGTGGATGTATCGTATGGAGGAGAAAATGGTTTCAA 876 || || |||||| ||||||| || ||||| || || ||||| ||||| |||||||| Sbjct 876 TCTTCAAGCTAAGATATTGAATGTTGTTGATGTTTCTTACGGAGGTGAAAACGGTTTCAA 935 Query 877 TCAGGCTATTGAGCTGTCAGCTGAAATTCTGGCGAATGTGAAGTTCATCCAAGAGAAGCG 936 || || ||||||||||| ||||| ||||| | |||||||||||||| || |||||| Sbjct 936 CCAAGCGATTGAGCTGTCTGCTGAGATTCTATCCAATGTGAAGTTCATACAGGAGAAGAA 995 Query 937 TCTGATTGGGAAGTACTTTGAGGAGATAAGCCAGGACACAGGGAAGTATGTGTTT-GGTG 995 ||||||||||||||||||||||||||||| || || || ||||| || || ||| |||| Sbjct 996 ACTGATTGGGAAGTACTTTGAGGAGATAAGTCAAGATACCGGGAAATACGT-TTTCGGTG 1054 Query 996 TGGAAGATACAT-TGAATGCTTTGGAG-TCGGGTGCTATAGAGACGCTGATTGTATGGGA 1053 |||| ||||| | | || ||| | || | ||||||||| || || || || || ||||| Sbjct 1055 TGGAGGATAC-TCTAAAGGCTCTAGAAAT-GGGTGCTATCGAAACCCTTATCGTGTGGGA 1112 Query 1054 AAATCTCGATATCAACAGATATGTGATGAAGAACAGTGCGACTGGTGAAACTG-TGATCA 1112 ||||| || || ||||| |||| | | ||||||||| |||| || |||| || || | | Sbjct 1113 GAATCTGGACATAAACAGGTATGAGCTAAAGAACAGTACGACAGGAGAAA-TGGTGGTGA 1171 Query 1113 AGCACCT-GA-ACAAGGAACAGGAAGCCA-ACACGGAG-AATTTCAAAG-TA-AGCGAC- 1165 | ||| | | | ||| | || || | | | || || || ||| | | | || ||| Sbjct 1172 AACACTTTGGGA-AAG-ATCAAGA-GTCTGATACA-AGCAACTTCCATGATTCAGAGACT 1227 Query 1166 AGCGACTTG-GCTTTGGATGTGGAGGAGAAGCTGTCGT-TACTGGAGTGGCTGGCGAACG 1223 | || | | ||| | | || |||||||| || | | |||| || ||| | || || | Sbjct 1228 AACG-CG-GAGCTA-GAA-GTACAGGAGAAGATGCC-TCTACTCGAATGGTTTGCAAATG 1282 Query 1224 AGTACAGGCGTTTTGGTTGTGCGCTAGAGTTTGTGACGAACAAATCACAGGAAGGTTCTC 1283 |||||| ||||| || || | || ||||||||||| |||||||| || ||||| || | Sbjct 1283 AGTACAAACGTTTCGGCTGCACTCTTGAGTTTGTGACTAACAAATCCCAAGAAGGGTCAC 1342 Query 1284 AGTTTTGCAGAGGGTTTGGAGGAATCGGAGGAATACTT-CGTTACCAGCTTGACATGA 1340 ||||||||||||| ||||| || || || || || || ||||||||||||||||||| Sbjct 1343 AGTTTTGCAGAGGTTTTGGTGGGATTGGTGGTATG-TTACGTTACCAGCTTGACATGA 1399 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 84587918325 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5