BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494832

Length=468
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G47890.1 | Symbols:  | NADH-ubiquinone oxidoreductase B8 sub...   782    0.0  


> AT5G47890.1 | Symbols:  | NADH-ubiquinone oxidoreductase B8 subunit, 
putative | chr5:19388737-19390629 FORWARD LENGTH=583
Length=583

 Score =  782 bits (423),  Expect = 0.0
 Identities = 455/470 (97%), Gaps = 4/470 (1%)
 Strand=Plus/Plus

Query  1    GAAAAAGAAGAACGATGGCATGGAGAGGAAGCATATCGAAGTCTATGAAAGAGCTTAGGA  60
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  56   GAAGAAGAAGAACGATGGCATGGAGAGGAAGCATATCGAAGTCTATGAAAGAGCTTAGGA  115

Query  61   TTCTTCTTTGTCAATCTTCTCCAGCTAGTGCTCCCACCAGAACGTTTGTTGAGAATAATT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  116  TTCTTCTTTGTCAATCTTCTCCAGCTAGTGCTCCCACCAGAACGTTTGTTGAGAAGAATT  175

Query  121  ACAAAGATTTGAAGTCTCTAAACCCTAAATTCCCAATCTTGATCCGTGAATGTAGTGGAG  180
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  176  ACAAAGATTTGAAGTCTCTAAACCCTAAATTACCAATCTTGATCCGTGAATGTAGTGGAG  235

Query  181  TCCAGCCTCAGATGTGGGCAAGATATGATATGGGTGTGGAGAGGTGTGTAAACTTGGATG  240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  236  TCCAGCCTCAGATGTGGGCAAGATATGATATGGGTGTGGAGAGGTGTGTAAACTTGGATG  295

Query  241  GTCTGACCGAGCCACAGATTCTAAAGGCCCTTGAAAACCTTGTGAAATCCGGAGCTACAA  300
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  GTCTGACAGAGCCACAGATTCTAAAGGCCCTTGAAAACCTTGTGAAATCCGGAGCTACAA  355

Query  301  AAGCCTAAGgttgtttgtttgtttgttttt-tCTATATGATCCCGAATAAGATTAAACCG  359
            | ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  356  AGGCCTAAGTTTGTTTGTTTGTTTGTTTTTCTCTATATGATCCCGAATAAGATTAAACCG  415

Query  360  GAAA-CACCTCATTTGACATTTCCTGTCATTCTACTACATTGTAACTCCATGGTGTCATA  418
             ||| ||  ||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct  416  CAAAACAA-TCATTTGACATTTCCTGTCATTCTACTACTTTGTAACTCCGTGGTGTCATA  474

Query  419  TCGCCTTGCGTTTGAGTTGGttttttttGTGTAATCCTTGAACTTGGAAT  468
            ||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  475  TCGCCTTGCATTTGAGTTGGTTTTTTT-GTGTAATCCTTGAACTTGGAAT  523



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22253727121


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5