BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494835
Length=1410
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47900.1 | Symbols: | Protein of unknown function (DUF1624)... 2098 0.0
> AT5G47900.1 | Symbols: | Protein of unknown function (DUF1624)
| chr5:19392289-19395135 FORWARD LENGTH=1530
Length=1530
Score = 2098 bits (1136), Expect = 0.0
Identities = 1339/1433 (93%), Gaps = 29/1433 (2%)
Strand=Plus/Plus
Query 1 ATGTACGAATTAATCAAA-A-GTTG-TGATGATGATCAACAATGGCGTGAGAAGAAAGAC 57
||||||||| ||||||| | || |||| ||||||| |||||||| ||||||||||||
Sbjct 54 ATGTACGAAGCAATCAAAGACAATGATGATAATGATCATCAATGGCGAGAGAAGAAAGAC 113
Query 58 ATTGAGTCTGCTCTTCAGATTTCTCGTTC-T--TCTCTTCCTCCCGACAAAGAACGATTG 114
||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 114 ATTGAGTCTGCTCTTCAGATTTCTCGTTCTTCCTCTCTTCCTCCCGACAAGGAACGATTA 173
Query 115 GTTTCTCTTGATGTCTTTCGTGGTCTTACTGTCGCCTTGATGATACTTGTGGATGATGTT 174
||||| |||||||||||||| |||||||| ||||| || |||||||||||||||||||||
Sbjct 174 GTTTCCCTTGATGTCTTTCGCGGTCTTACCGTCGCATTTATGATACTTGTGGATGATGTT 233
Query 175 GGAGGGATTTTACCATCTATTAATCATTCACCTTGGGATGGTGTCACACTTGCGGATTTT 234
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 234 GGAGGGATTTTACCATCTATTAATCATTCACCTTGGGATGGTGTCACACTAGCGGATTTT 293
Query 235 GTCATGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTATAAGAATTTG 294
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 294 GTCATGCCTTTTTTCTTATTTATTGTTGGTGTCTCTCTTGCCTTTGCTTACAAGAACTTG 353
Query 295 TCATGTAGGTTTGTTGCAACAAGAAAAGCTTTGATTCGGTCGTTGAAACTTCTCTTACTT 354
|||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 354 TCATGTAGGTTTGTCGCAACAAGAAAAGCTTTGATTCGATCTTTGAAACTTCTATTACTT 413
Query 355 GGTCTTTTTCTTCAAGGAGGATTTATTCATGGTCTTAACAACTTAACTTATGGAATAGAT 414
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 414 GGTCTTTTTCTCCAAGGAGGATTTATTCATGGTCTTAATAACTTAACTTATGGAATAGAT 473
Query 415 GTAGAAAAAATTAGATTCATGGGCATATTACAGAGAATAGCGATAGCATACTTAGTTGCT 474
||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 474 GTAGAAAAAATTAGACTCATGGGTATATTACAGAGAATAGCGATAGCATACTTAGTTGTT 533
Query 475 GCATTGTGCGAGATTTGGTTAAAGGGAAACCATAATGTTAGCTCAGAGTTATCTATGATC 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GCATTGTGCGAGATTTGGTTAAAGGGAAACCATAATGTTAGCTCAGAGTTATCTATGATC 593
Query 535 AAGAAATATAGATTTCACTGGGTGGTTGCATTTGTTATTACAACTATATATTTGTCCTTG 594
||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 594 AAGAAATATAGATTTCATTGGGTGGTTGCTTTTGTTATCACAACTATATATTTGTCCTTG 653
Query 595 CTATACGGTTTATATGTGTCC-GACTGGGAGTATCAGATTTCAACAGAAGACCAAGGATC 653
|||| ||||||||||| || ||||||||||||||||||| || |||||||||||||||
Sbjct 654 TTATATGGTTTATATGTA-CCTGACTGGGAGTATCAGATTTTAAAAGAAGACCAAGGATC 712
Query 654 AACATTGACAACATTCTTGAATCTGAAGGTGAAATGCGGGGTACGAGGACACACTGGACC 713
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 713 AACATTGACAACATTCTTGAATCTGAAGGTGAAATGTGGGGTACGAGGTCACACTGGACC 772
Query 714 AGGTTGCAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTATAG 773
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 773 AGGCTGTAATGCAGTTGGAATGCTTGACCGTATGTTTCTAGGAATCCAGCATTTGTACAG 832
Query 774 GAAACCCGTTTATGCACGAACCAAGCAATGCAGTATAAGTTCTCCAAACAATGGGCCATT 833
||||| || |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 833 AAAACCTGTATATGCACGAACCAAGCAATGCAGTATAAATTATCCAAACAATGGGCCATT 892
Query 834 ACCTCCAGATGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAGTTC 893
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ACCTCCAGACGCTCCTTCTTGGTGTCAAGCGCCTTTTGACCCCGAAGGCCTCTTAAGTTC 952
Query 894 GTTGATGGCTATCGTTACATGCCTAGTGGGTCTGCACTACGGCCATATTATCATCCACTT 953
||||||||| | ||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 953 GTTGATGGCCACCGTAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTT 1012
Query 954 CAAGGATCACAAAAAGCGTTTGAATCAATGGATTTTGCGTTCTTTTTGTCTTCTAATGTT 1013
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1013 CAAGGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTGATGTT 1072
Query 1014 AGGTCTCGCTCTGAACCTCTTTGGAATGCATCTAAATAAACCTCTATACACACTGAGTTA 1073
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1073 AGGTCTCGCACTGAACCTCTTTGGAATGCATCTAAATAAACCTCTATACACATTGAGTTA 1132
Query 1074 CATGTGTGTCACCTCAGGCGCCTCTGGATTTTTGTTATCCGCGATATATCTAATGGTTGA 1133
|||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 1133 CATGTGTGTCACCTCAGGGGCCTCGGGATTTTTGTTATCCGCGATATACCTAATGGTCGA 1192
Query 1134 CGTTTATGGATACAAACGAGCAAGCCTTGTGTTAGAGTGGATGGGAATACATGCCTTACC 1193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CGTTTATGGATACAAACGAGCAAGCCTTGTGTTAGAGTGGATGGGAATACATGCCTTACC 1252
Query 1194 GATATACGTTCTCATTGCTTGCAATCTTGT-TTTCCTAATCATTCATGGATTCTATTGGA 1252
||| |||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 1253 GATTTACGTTCTCATTGCTTGCAATCTTGTCTTTC-TAATCATTCATGGATTCTACTGGA 1311
Query 1253 AGAAACCCATTAACAATCTCCTTCATTTAATCGGAATCGGAAAGTAAAGAAGAGAAGAGA 1312
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AGAACCCCATTAACAATCTCCTTCATTTAATCGGAATCGGAAAGTAAAGAAGAGAAGAGA 1371
Query 1313 AG-----T-AAG---T---TT-CATCAACCCAAAAC-TTAAATATCTTTTTGTTAGAAAG 1358
|| | ||| | || |||||||| ||||| |||| | | |||||||||||||
Sbjct 1372 AGGGAGGTGAAGAAATAAGTTTCATCAACC-AAAACCTTAA-T-TGTTTTTGTTAGAAAT 1428
Query 1359 AAACGAAA-GTCATCTTCATCTTCACATCCCACATGGAATCCAATTTATGCTA 1410
|||| ||| | ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1429 AAAC-AAATGCCATCTTCATCTTCACATCCCATATGGAATCCAATTTATGCTA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69477554280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5