BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494838
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47920.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1142 0.0
> AT5G47920.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G13880.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:19403173-19404088 REVERSE LENGTH=916
Length=916
Score = 1142 bits (618), Expect = 0.0
Identities = 748/808 (93%), Gaps = 20/808 (2%)
Strand=Plus/Plus
Query 31 GAAAAAATATGAAGAAAGCTACGGCATTGATGAAACATATCGTTGCGTTGTTGAGTTCTA 90
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 60 GAAAAAATATGAAGAAAGCTACGGCATTGATGAAACATATCGTTGCATTGTTGAGTTCCA 119
Query 91 TGGCGAAGGCTAAATCTATAGCCATAAAGAACAAAACAAGTGCTTTCAAGACACGAGTAC 150
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 TGGCGAAGGCAAAATCTATAGCCATAAAGAACAAAACGAGTGCTTTCAAGACACGAGTAC 179
Query 151 TCATGTTGTCTCTAGTGAAACACAAGAAACTCGGGTTTCGTTCGATTTCCAACAAGATTC 210
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 180 TCATGTTGTCTCTAGTGAAACACAAGAAACTCGGGTTCCGTTCCATTTCCAACAAGATTC 239
Query 211 ACCACCTCTTGGGCCATGCAGATCAAGACGACGACGACAACGACCATGACCAAGACAAGA 270
||||||||||||||||||| |||| | | |||||||| |||||||| |||||||||||||
Sbjct 240 ACCACCTCTTGGGCCATGCGGATC-A-A-GACGACGATAACGACCAGGACCAAGACAAGA 296
Query 271 ACAAGGCTATAGTTCTCTACAACAGCAAGGCATACACAATGGCTCATCATGAGGAATACG 330
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 297 ACAAGGCTATAGTCCTCTACAACAGCAAGGCATCCACAATGGCTCATCATGAGGAATATG 356
Query 331 ATGTTCACGAGGAGGACAGCGACAAGTATCCAGATCTGAGGCACACGTTGTTCGAAGGAG 390
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 ACGTTCACGAGGAGGAAAGCGACAAGTATCCTGATCTGAGGCACACGTTGTTCGAAGGAG 416
Query 391 AGGAGGAGTTTGGAGACTTGGAGGAGGAAGGTCAAGGTAGTTCTGTGATAGAAATGGTGA 450
||||||| || || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 AGGAGGACTTCGGGGACTTGGAGGAGGAAGGTCAAGGTAGTTCTGTGATAGATATGGTGA 476
Query 451 GGAACTCG-A--AAGAAGAAGGAGAGAATTTTAAGCTAGAAGATGAGATCGACCATGTCG 507
||| |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 477 GGACCTCGAAGGAAGAAGAAGGAGAGAATTTCAAGCTAGAAGATGAGATCGACCATGTCG 536
Query 508 CAGATATCTTTATTTCAAGGTTTCATAAGCAGATGAAGCTTCAGAAACTCTTGTCCTTCA 567
| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGGATCTCTTTATTTCTAGGTTTCATAAGCAGATGAAGCTTCAGAAACTCTTGTCCTTCA 596
Query 568 AGAGGTATCAAGAGATGCTAGCCCGAGGCACCTAATACCTATATCTTTACATATACATAT 627
||||||||||||| ||||||||||||||||||||| ||| ||||| |||||| ||||
Sbjct 597 AGAGGTATCAAGAAATGCTAGCCCGAGGCACCTAA-ACCCATATC----CATATATATAT 651
Query 628 ATAAACATGTTGGCGATAGATATGAATAATAGATTCATATTATGATCTTTGCTAACGT-- 685
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 ATAAACATGTTGGCAATAGATATGAATAATAGATTCATATTATGATCTTTGCTAACGTAC 711
Query 686 -T-CTTATTTTGTGTTGTCTATAATAAATCCTTCGAGCCCCCTTATTTTCTAGGATCGAA 743
| ||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 712 GTTCTTATTTTGTGTTGTCTATGATAAATCCTTCGAGTTCTCTTATTTTCTAGGATCGAA 771
Query 744 ATATTATGACCTCTTAGATATGTTTTCATTTGACATGTTGA-GTTGAAGGAAGGATCTAT 802
|||||| | ||||||||| ||||||||||| | ||||||| ||||||||||||||||
Sbjct 772 ATATTACGGTCTCTTAGATCTGTTTTCATTTAATATGTTGAAGTTGAAGGAAGGATCTG- 830
Query 803 CTGTTTTGTGGAATATGTTTTCTTCCTC 830
|| || | |||||||||||||||||||
Sbjct 831 CT-TT--GCGGAATATGTTTTCTTCCTC 855
Score = 60.2 bits (32), Expect = 3e-08
Identities = 46/52 (88%), Gaps = 3/52 (6%)
Strand=Plus/Plus
Query 1 ATGCTAATTAAGCAACATCCAAAACATAAGGAAAAAA-TATGA-AGAAAGCT 50
|||||||||||||||||||||||||||||| |||| | ||| | |||| |||
Sbjct 1 ATGCTAATTAAGCAACATCCAAAACATAAGTAAAACACTATTATAGAA-GCT 51
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5