BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494841
Length=1346
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47950.1 | Symbols: | HXXXD-type acyl-transferase family pr... 1923 0.0
> AT5G47950.1 | Symbols: | HXXXD-type acyl-transferase family
protein | chr5:19417031-19418546 REVERSE LENGTH=1516
Length=1516
Score = 1923 bits (1041), Expect = 0.0
Identities = 1231/1323 (93%), Gaps = 12/1323 (1%)
Strand=Plus/Plus
Query 1 AAACAAAGGAAGGGAAAGAAGAAGATCAATCCATGGACACCATGAAGGTTGAAATC-ATT 59
|||||||| ||||||| || |||||| |||| ||||||||||||||||| |||| | |||
Sbjct 17 AAACAAAGAAAGGGAAGGAGGAAGATTAATCGATGGACACCATGAAGGTAGAAA-CTATT 75
Query 60 GGTAAAGAGATCATAAAGCCATCTGCAATAACTCCAACTGATCTCCCACCTCTTCAATTC 119
|||||||||||||| ||||||||||||| |||||||||||||||| || |||||||| ||
Sbjct 76 GGTAAAGAGATCATTAAGCCATCTGCAACAACTCCAACTGATCTCTCAACTCTTCAACTC 135
Query 120 TCTATTATGGATATAATAATGCCTCCTGTTTACACCGTTGCCTTTCTTTTCTACACCAAA 179
||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 136 TCTATTATGGATATACTAATGCCTCCGGTTTACGCCGTTGCCTTTCTTTTCTACACCAAA 195
Query 180 GATGATTTGATCTCCCAAGAACAAACGTCTCACACTCTCAAAACTTCCCTGTCCGAGATC 239
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 196 GATGATTTGATCTCGCAAGAACAAACGTCTCATACTCTCAAAACTTCCCTGTCCGAGATC 255
Query 240 TTGACAAAATTCCACCCTTTAGCCGGAAGAGTCAATGGAGTCACCATCGAGAGTAATGAC 299
|||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| |||
Sbjct 256 TTGACAAAATTCCACCCTTTGGCCGGTAGAGTCAATGGAGTCACCATCAAGAGTACCGAC 315
Query 300 GAAGGAGCCGTCTTTGTGGAGGCACGCGTCGATAACTGCAATCTCTCTAGTTTTCTTAGA 359
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||
Sbjct 316 GAAGGAGCCGTCTTTGTGGAGGCACGCGTCGATAACTGCGATCTCTCTGGTTTTCTGAGA 375
Query 360 TCCCCAGATACCGAGTTC-CTCAAACAGTTGCTTCCTGTAGATGACGAGCCAGCTCCTAC 418
||||| |||||||| || |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 376 TCCCCGGATACCGA-ATCACTCAAACAGTTGCTACCTGTAGATGACGAGCCCGCTCCTAC 434
Query 419 ATGGCCCTTGCTTCTTGTGCAAGCGACCTACTTCCAATGTGGTGGCATGGCCATCGGACT 478
|||||| |||||||||||| |||| |||||||||| |||||||||||||||||| |||||
Sbjct 435 ATGGCCATTGCTTCTTGTGAAAGCAACCTACTTCCGATGTGGTGGCATGGCCATAGGACT 494
Query 479 CTGCATCTCCCATAAGCTTGCCGATGCAACCTCTCTCTCGATTTTCTTACAGGCTTGGGC 538
|||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 495 CTGCATCTCCCATAGGCTCGCCGATGCAGCCTCTCTCTCGATTTTCTTACAGGCTTGGGC 554
Query 539 TGCCACAGCTCGAGGGGAGAGCGACTCGGTGGCCAGTCCTGAC-TTTGTTTCCACAAAGC 597
||||||||| |||| |||||||||| |||||||||||||||| |||| ||||||||| |
Sbjct 555 AGCCACAGCTAGAGGAGAGAGCGACTTGGTGGCCAGTCCTGACTTTTG-TTCCACAAAAC 613
Query 598 TTTACCCAGCGGCAAATGAGGCTATTGGTATTCCAAAAAAGGATCAAGTAGGTAAGAGAA 657
||||||| || |||||||| || ||| ||||| ||| |||||| ||| ||||
Sbjct 614 TTTACCCCGCAGCAAATGAAGCCATTAAAATTCC-----AGG-GGAAGTAGTTAACAGAA 667
Query 658 CAAGTGTCACGAAGAGATTTGTGTTTGTAGAATCTAAGATCGAAGAGCTCAGGAACAAAG 717
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 668 CAAGTGTCACGAAGAGATTTGTGTTTGTAGCATCTAAAATCGAAGAGCTCAGGAACAAAG 727
Query 718 TCGCTAGTGATGTCGTGCCTCGACCCACGCGGGTCCAGAGCGTGACTTCACTTATATGGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 TCGCTAGTGATGTCGTGCCTCGACCCACGCGGGTCCAGAGCGTGACTTCACTTATATGGA 787
Query 778 AATGTGTTGTGACTGCATCGACAGACACAATTCGTGAGAAAGCTCTGTTCCAACCGGCTA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AATGTGTTGTGACTGCATCGACAGACACAATTCGTGAGAAAGCTCTGTTCCAACCGGCTA 847
Query 838 ACTTGCGCCCCAAGATACCCTCCCTATTGTCTGAAAACCAAATCGGTAACCTCTTCTTCG 897
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 848 ACTTGCGCACCAAGATACCTTCCCTTTTGTCTGAAAACCAAATCGGTAACCTCTTGTTTA 907
Query 898 CCACCCTAACCTTGGATGGAAAAGCCGGGGTGGATATTGTAGAAACTGTTAAGGAACTAC 957
| || ||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 908 ACTCCTTAATCTTGGATGGGAAAGCCGGGATGGATATTGTAGAAACTGTTAAGGAACTAC 967
Query 958 AAAAAAGGGCCGAGGAGTTATCCGGTTTGGTTCAACATGAGGAAGGGTCATCAATGACGA 1017
||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct 968 AAAAAAGAGCCGAGGATTTATCCGGTTTGGTTCAAGATGAGGAAGGGTCATCAATGACTA 1027
Query 1018 TAGGTTCGAGATTGTTTGGTGAAATCATTAATTCCAAGTTTAACCACGAGGTTCATGACA 1077
|||||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 1028 TAGGTTGGAGATTGTTTGGTGAAATCATTAATTCCAAGTTTAACCGCGAAGATCATGACA 1087
Query 1078 TGCATTCTGTAACTAGCTGGTGCAAGATTCCTCTTTATAAGGCTTGCTTCGGGTGGGGAT 1137
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 1088 TGCATTCTGTAACTAGCTGGTGCAAGATTCCTCTTTATGATGCTTGCTTCGGGTGGGGAT 1147
Query 1138 CTCCGGTTTGGGTAGCTGGATCTGTTTCTCCGAATCTAGACGATGTAACCGTGTTGATCG 1197
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1148 CTCCGGTTTGGGTAGCTGGATCTGTTTCTCCGAATCTAGACTATGTAACCGTGTTGATCG 1207
Query 1198 ATTCTAAAGATGGACAAGGAATCGAAGCATGGGTGACATTGCATCAAGAGAACATGTTAC 1257
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1208 ATTCTAAAGACGGACAAGGAATCGAAGCATGGGTGACATTGCCTCAAGAGAACATGTTAC 1267
Query 1258 TGTTCGAGCAGAGCACAGAACTGCTTGCCTTTGCCTCCCCAAATCCAAGTGTATTGATCT 1317
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1268 TGTTGGAGCAGAGCACAGAACTGCTTGCCTTTGCCTCCCCAAATCCAAGTGTATTGATCT 1327
Query 1318 AAT 1320
|||
Sbjct 1328 AAT 1330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66264719400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5