BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494853 Length=819 Score E Sequences producing significant alignments: (Bits) Value AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homo... 1312 0.0 AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family prote... 448 5e-125 > AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog A4C | chr5:19421384-19422533 REVERSE LENGTH=881 Length=881 Score = 1312 bits (710), Expect = 0.0 Identities = 784/820 (96%), Gaps = 3/820 (0%) Strand=Plus/Plus Query 1 TCTTAAATCCATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAGTTTCAGAGCAATTTC 60 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 25 TCTAAAATCTATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAATTTCAGAGCAATTTC 84 Query 61 AATCAGAAGATAGATTATGTCTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 85 AATCAGAAGATAGATTATGTGTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 144 Query 121 TCTCAGCTTCTCGCTAGATTTTCAAGAAACGAGTTTAGTATCGAATCTAAAGCAACGATC 180 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 145 TCTCAGCTTCTCGCTAGGTTTTCAAGAAACGAGTTCAGTATCGAATCTAAAGCAACGATC 204 Query 181 GGTGTCGAGTTTCAGACAAGAACACTTGAAATAGATCATAAAACTATCAAAGCTCAGATA 240 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 205 GGTGTCGAGTTTCAGACAAGAACACTTGAAATCGATCGTAAAACTATCAAAGCTCAGATA 264 Query 241 TGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCATACTACAGAGGAGCA 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 265 TGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCATACTACAGAGGAGCA 324 Query 301 GTAGGGGCAATGCTAGTTTACGACATAACGAAACGACAGTCGTTTGATCATGTAGCGAGA 360 |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 325 GTAGGGGCAATGTTAGTTTACGATATAACAAAACGACAGTCGTTTGATCATGTAGCGAGA 384 Query 361 TGGTTAGAAGAATTGAGAGGACATGCTGACAAAAACATTGTGATTATGCTTATAGGAAAT 420 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 385 TGGTTAGAAGAATTGAGAGGACATGCTGACAAAAACATTGTGATTATGCTAATAGGAAAC 444 Query 421 AAAACTGATCTTGGGACACTTCGAGCTGTACCAACTGAGGATGCTAAAGAATTTGCCCAA 480 ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 445 AAAACTGATCTCGGGACACTTCGAGCTGTACCAACCGAGGATGCTAAAGAATTTGCTCAA 504 Query 481 AGAGAAAATCTGTTTTTCATGGAGACATCGGCCCTGGATTCGAACAATGTTGAGCCGTCG 540 ||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| ||| Sbjct 505 AGAGAAAATCTGTTTTTCATGGAGACATCAGCCTTGGATTCAAACAATGTTGAGCCTTCG 564 Query 541 TTTCTCACGGTTCTGACGGAAATCTATCGAATAGTGAGCAAAAAGAATCTTGTAGCGAAT 600 || ||||||||| |||||||||| |||||||| ||||| |||||||||||||| || ||| Sbjct 565 TTCCTCACGGTTTTGACGGAAATATATCGAATTGTGAGTAAAAAGAATCTTGTTGCTAAT 624 Query 601 GAGGAAGGAGAATCTGGAGGAGACTCTTCTCTTTTGCAAGGAACTAAGATTGTTGTTGCT 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 GAGGAAGGAGAATCTGGAGGAGACTCTTCTCTTTTGCAAGGAACTAAGATTGTTGTTGCT 684 Query 661 GGAGAAGAGACTGAATCTAAAGGAAAAGGTTGTTGTGGAACATCATAGAATTATTTTCAT 720 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 685 GGAGAAGAGACTGAATCTAAAGGAAAAGGTTGTTGTGGAACATCATAGACTTTTTTTCAT 744 Query 721 GATCTTTTCTCtttttttttCTGTTACTACCATTTCTTGTGATCTTATTTCTTTCTTT-T 779 |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| | Sbjct 745 GATCTTTTCTCTTTTTTTTTTTGTTACTACCATTTCTTGTGATCATATTTCT--CTTTCT 802 Query 780 CTTTGACTGCATAAATATTGTGTCTTCTTTGTATGTAAGA 819 ||||||||||||||||| ||||||| |||||||||||||| Sbjct 803 CTTTGACTGCATAAATAATGTGTCTACTTTGTATGTAAGA 842 > AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family protein | chr5:19422203-19425811 FORWARD LENGTH=2070 Length=2070 Score = 448 bits (242), Expect = 5e-125 Identities = 258/266 (97%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 1 TCTTAAATCCATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAGTTTCAGAGCAATTTC 60 ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 307 TCTAAAATCTATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAATTTCAGAGCAATTTC 248 Query 61 AATCAGAAGATAGATTATGTCTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 247 AATCAGAAGATAGATTATGTGTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 188 Query 121 TCTCAGCTTCTCGCTAGATTTTCAAGAAACGAGTTTAGTATCGAATCTAAAGCAACGATC 180 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 187 TCTCAGCTTCTCGCTAGGTTTTCAAGAAACGAGTTCAGTATCGAATCTAAAGCAACGATC 128 Query 181 GGTGTCGAGTTTCAGACAAGAACACTTGAAATAGATCATAAAACTATCAAAGCTCAGATA 240 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 127 GGTGTCGAGTTTCAGACAAGAACACTTGAAATCGATCGTAAAACTATCAAAGCTCAGATA 68 Query 241 TGGGACACTGCTGGTCAAGAACGGTA 266 |||||||||||||||||||||||||| Sbjct 67 TGGGACACTGCTGGTCAAGAACGGTA 42 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39885912718 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5