BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494853
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homo... 1312 0.0
AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family prote... 448 5e-125
> AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog
A4C | chr5:19421384-19422533 REVERSE LENGTH=881
Length=881
Score = 1312 bits (710), Expect = 0.0
Identities = 784/820 (96%), Gaps = 3/820 (0%)
Strand=Plus/Plus
Query 1 TCTTAAATCCATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAGTTTCAGAGCAATTTC 60
||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 25 TCTAAAATCTATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAATTTCAGAGCAATTTC 84
Query 61 AATCAGAAGATAGATTATGTCTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 85 AATCAGAAGATAGATTATGTGTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 144
Query 121 TCTCAGCTTCTCGCTAGATTTTCAAGAAACGAGTTTAGTATCGAATCTAAAGCAACGATC 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 145 TCTCAGCTTCTCGCTAGGTTTTCAAGAAACGAGTTCAGTATCGAATCTAAAGCAACGATC 204
Query 181 GGTGTCGAGTTTCAGACAAGAACACTTGAAATAGATCATAAAACTATCAAAGCTCAGATA 240
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 205 GGTGTCGAGTTTCAGACAAGAACACTTGAAATCGATCGTAAAACTATCAAAGCTCAGATA 264
Query 241 TGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCATACTACAGAGGAGCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 265 TGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCATACTACAGAGGAGCA 324
Query 301 GTAGGGGCAATGCTAGTTTACGACATAACGAAACGACAGTCGTTTGATCATGTAGCGAGA 360
|||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 325 GTAGGGGCAATGTTAGTTTACGATATAACAAAACGACAGTCGTTTGATCATGTAGCGAGA 384
Query 361 TGGTTAGAAGAATTGAGAGGACATGCTGACAAAAACATTGTGATTATGCTTATAGGAAAT 420
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 385 TGGTTAGAAGAATTGAGAGGACATGCTGACAAAAACATTGTGATTATGCTAATAGGAAAC 444
Query 421 AAAACTGATCTTGGGACACTTCGAGCTGTACCAACTGAGGATGCTAAAGAATTTGCCCAA 480
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 445 AAAACTGATCTCGGGACACTTCGAGCTGTACCAACCGAGGATGCTAAAGAATTTGCTCAA 504
Query 481 AGAGAAAATCTGTTTTTCATGGAGACATCGGCCCTGGATTCGAACAATGTTGAGCCGTCG 540
||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |||
Sbjct 505 AGAGAAAATCTGTTTTTCATGGAGACATCAGCCTTGGATTCAAACAATGTTGAGCCTTCG 564
Query 541 TTTCTCACGGTTCTGACGGAAATCTATCGAATAGTGAGCAAAAAGAATCTTGTAGCGAAT 600
|| ||||||||| |||||||||| |||||||| ||||| |||||||||||||| || |||
Sbjct 565 TTCCTCACGGTTTTGACGGAAATATATCGAATTGTGAGTAAAAAGAATCTTGTTGCTAAT 624
Query 601 GAGGAAGGAGAATCTGGAGGAGACTCTTCTCTTTTGCAAGGAACTAAGATTGTTGTTGCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 GAGGAAGGAGAATCTGGAGGAGACTCTTCTCTTTTGCAAGGAACTAAGATTGTTGTTGCT 684
Query 661 GGAGAAGAGACTGAATCTAAAGGAAAAGGTTGTTGTGGAACATCATAGAATTATTTTCAT 720
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 685 GGAGAAGAGACTGAATCTAAAGGAAAAGGTTGTTGTGGAACATCATAGACTTTTTTTCAT 744
Query 721 GATCTTTTCTCtttttttttCTGTTACTACCATTTCTTGTGATCTTATTTCTTTCTTT-T 779
|||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||| |
Sbjct 745 GATCTTTTCTCTTTTTTTTTTTGTTACTACCATTTCTTGTGATCATATTTCT--CTTTCT 802
Query 780 CTTTGACTGCATAAATATTGTGTCTTCTTTGTATGTAAGA 819
||||||||||||||||| ||||||| ||||||||||||||
Sbjct 803 CTTTGACTGCATAAATAATGTGTCTACTTTGTATGTAAGA 842
> AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19422203-19425811 FORWARD LENGTH=2070
Length=2070
Score = 448 bits (242), Expect = 5e-125
Identities = 258/266 (97%), Gaps = 0/266 (0%)
Strand=Plus/Minus
Query 1 TCTTAAATCCATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAGTTTCAGAGCAATTTC 60
||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 307 TCTAAAATCTATAAGCTTGTGATTTTGGTGTGAACGATGTCAAAATTTCAGAGCAATTTC 248
Query 61 AATCAGAAGATAGATTATGTCTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 247 AATCAGAAGATAGATTATGTGTTCAAGGTAGTCTTGATCGGCGACTCTGCTGTTGGTAAA 188
Query 121 TCTCAGCTTCTCGCTAGATTTTCAAGAAACGAGTTTAGTATCGAATCTAAAGCAACGATC 180
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 187 TCTCAGCTTCTCGCTAGGTTTTCAAGAAACGAGTTCAGTATCGAATCTAAAGCAACGATC 128
Query 181 GGTGTCGAGTTTCAGACAAGAACACTTGAAATAGATCATAAAACTATCAAAGCTCAGATA 240
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 127 GGTGTCGAGTTTCAGACAAGAACACTTGAAATCGATCGTAAAACTATCAAAGCTCAGATA 68
Query 241 TGGGACACTGCTGGTCAAGAACGGTA 266
||||||||||||||||||||||||||
Sbjct 67 TGGGACACTGCTGGTCAAGAACGGTA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5