BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494858
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48070.1 | Symbols: ATXTH20, XTH20 | xyloglucan endotransglu... 1709 0.0
AT4G30280.1 | Symbols: ATXTH18, XTH18 | xyloglucan endotransglu... 922 0.0
AT1G65310.1 | Symbols: ATXTH17, XTH17 | xyloglucan endotransglu... 915 0.0
> AT5G48070.1 | Symbols: ATXTH20, XTH20 | xyloglucan endotransglucosylase/hydrolase
20 | chr5:19482106-19483452 FORWARD LENGTH=1122
Length=1122
Score = 1709 bits (925), Expect = 0.0
Identities = 1057/1118 (95%), Gaps = 19/1118 (2%)
Strand=Plus/Plus
Query 1 ATCCATCTAAGATAGTATAACTTCTCTTTCCAAAATCAATTTT-AATGGTGTCATTTTGC 59
|||||||||||||| ||||||| |||||||||||| ||||||| ||||||||||||||||
Sbjct 8 ATCCATCTAAGATACTATAACTACTCTTTCCAAAAGCAATTTTAAATGGTGTCATTTTGC 67
Query 60 GATAGAAGGTTCGCATTCCTGATTATCTTTCTCTTCGCTGCACAATATGAGCGTGTCTAT 119
| |||||||||||| ||| |||||||||||||||| || ||||||||||||||||||||
Sbjct 68 GGTAGAAGGTTCGCCTTCTTGATTATCTTTCTCTTTGCAGCACAATATGAGCGTGTCTAC 127
Query 120 GCTGGTAGCTTTCACAAGGACGTTCAGATACACTGGGGTGATGGCCGTGGAAAGATTCTC 179
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 128 GCTGGTAGCTTTCACAAGGACGTTCAGATACATTGGGGTGATGGCCGTGGAAAAATTCTC 187
Query 180 GACAATGTCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAG 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GACAATGTCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAG 247
Query 240 TCCCATCAAGAGTTTCTATATGGAAAAGTTGAGGTTCAAATGAAACTTGTACCTGGTAAC 299
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 248 TCCCATCAAGAGTTTCTTTATGGCAAAGTAGAGGTTCAAATGAAACTTGTACCTGGTAAC 307
Query 300 TCTGCTGGAACAGTGACAACATTCTATCTAAAATCGCCTGGAACTACGTGGGATGAGATA 359
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 308 TCTGCTGGAACAGTGACAACATTCTATCTAAAATCTCCTGGAACTACATGGGATGAAATA 367
Query 360 GATTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACACTTCATACTAATGTTTAC 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 368 GATTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACTCTTCATACTAATGTTTAC 427
Query 420 ACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACTGTACAC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 428 ACAAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACTGTTGAC 487
Query 480 TTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGATGGAATT 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TTTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGATGGAATT 547
Query 540 CCGATAAGAGAATTCAAGAACTCCGAATCCGTTGGAGTTCCCTTCCCAAAGCATCAACCA 599
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 548 CCGATAAGAGAATTCAAGAACTCCGAAGCCCTTGGAGTTCCCTTCCCAAAGCATCAACCA 607
Query 600 ATGAGACTCTATGCGAGCCTTTGGGAAGCCGAGCATTGGGCCACAAGAGGAGGATTAGAG 659
||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 608 ATGAGGCTCTATGCTAGCCTTTGGGAAGCCGAGCATTGGGCTACAAGAGGAGGATTAGAG 667
Query 660 AAAACAGACTGGTCCAAAGCTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AAAACAGACTGGTCCAAAGCTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCA 727
Query 720 TGTGTATGGGCTC-ATGGAAAATCATCATGCTCTGCGCATTCCTCATGGTTCACTCAAGT 778
||||| ||| | | ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 728 TGTGTGTGGTC-CAATGGAAAATCATCATGCTCTGCGAATTCCTCATGGTTTACTCAAGT 786
Query 779 ACTTGATTTCAAAGGCAAGAATAGAGTGAAATGGGCACAGAGAAAGTACATGGTCTACAA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ACTTGATTTCAAAGGCAAGAATAGAGTGAAATGGGCACAGAGAAAGTACATGGTCTACAA 846
Query 839 CTATTGCACTGATAAGAAAAGATTTCCTCAAGGTGCTCCTCCAGAGTGCAGTTAAATCAC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 847 CTATTGCACTGATAAGAAAAGATTTCCTCAAGGTGCTCCTCCAGAGTGCAGTTAAATAAC 906
Query 899 TGATTGTTTGATTCACGAATAAATCATGTGGCATTGTTTTTGTAACCGAAATGATGTTTA 958
|||||| ||||||||||||| ||||| |||||||||| |||||||| |||||||||||||
Sbjct 907 TGATTGCTTGATTCACGAATTAATCACGTGGCATTGTCTTTGTAACGGAAATGATGTTTA 966
Query 959 TCTATATTTTGGCACTAGCTGAGTATTCGCGCTAAACAAATTACTTCTCTATTAGTAA-- 1016
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 967 TCTATATTTTGGCACTAGCTGAGTATTTGCGCTAAATAAATTACTTCTCTATTAGTAATT 1026
Query 1017 Gttttttttt-tt-------gtt-ttt-tttG-TATTATTTGTATGTGTGATTTG-GCTT 1064
|||||||||| || ||| ||| ||| ||||||||||| |||||||||| | ||
Sbjct 1027 GTTTTTTTTTGTTCTATTATGTTGTTTCTTTTATATTATTTGTAAGTGTGATTTGCG-TT 1085
Query 1065 AGTTATCTAAATTACTTGTTTCCGTAACTTTTGTTATT 1102
||||| ||| ||||||||||| |||||||||||||||
Sbjct 1086 AGTTACCTAG-TTACTTGTTTCAGTAACTTTTGTTATT 1122
> AT4G30280.1 | Symbols: ATXTH18, XTH18 | xyloglucan endotransglucosylase/hydrolase
18 | chr4:14825808-14827047 REVERSE LENGTH=1048
Length=1048
Score = 922 bits (499), Expect = 0.0
Identities = 765/892 (86%), Gaps = 24/892 (3%)
Strand=Plus/Plus
Query 65 AAGGTTCGCATTCCTGATTATCTTTCTCTTCGCTGCACAATATGA-GCGTGTCTATGCTG 123
||| || || ||| ||||||| |||||||| || ||||||| | | || ||||||||| |
Sbjct 70 AAGTTTTGCGTTCTTGATTATGTTTCTCTTTGCGGCACAATCT-ATGCATGTCTATGCGG 128
Query 124 GTAGCTTTCACAAGGACGTTCAGATACACTGGGGTGATGGCCGTGGAAAGATTCTCGACA 183
||||||| ||||| || ||||||||||| |||||||| |||||||||||| | | |||||
Sbjct 129 GTAGCTTCCACAAAGATGTTCAGATACATTGGGGTGACGGCCGTGGAAAGGTGCGCGACA 188
Query 184 -ATG-TCGGAAATCTTCTTTCTCTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAGTC 241
| | | ||||| ||||| ||||||||||||||||||| |||||| ||||||||||||||
Sbjct 189 GA-GAT-GGAAAGCTTCTATCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGTC 246
Query 242 CCATCAAGAGTTTCTATATGGAAAAGTTGAGGTTCAAATGAAACTTGTACCTGGTAACTC 301
| | || |||||||| ||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 247 CAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTCCCTGGTAACTC 306
Query 302 TGCTGGAACAGTGACAACATTCTATCTAAAATCGCCTGGAACTACGTGGGATGAGATAGA 361
||||||||||| |||||||||||||| || || || |||||||||||||||||||| ||
Sbjct 307 AGCTGGAACAGTAACAACATTCTATCTTAAGTCTCCGGGAACTACGTGGGATGAGATTGA 366
Query 362 TTTTGAGTTCTTGGGAAACATAAGTGGTCATCCATATACACTTCATACTAATGTTTACAC 421
||| |||||||| |||||| ||||||||||||| ||||| || |||||||||||||||||
Sbjct 367 TTTCGAGTTCTTAGGAAACCTAAGTGGTCATCCGTATACTCTCCATACTAATGTTTACAC 426
Query 422 AAAAGGCACAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACTG-TACACT 480
||||||| ||||||||||||||||||| |||||||||||||| |||||||||| || |||
Sbjct 427 AAAAGGCTCAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCAACTGTTA-ACT 485
Query 481 TTCACACTTATTGTATCATATGGAATCCCCAAAGGGTCATTTTTACAATAGATGGAATTC 540
||||||||||||| |||| |||||||||||||||| | ||||||||| | ||||||||||
Sbjct 486 TTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACAGTTGATGGAATTC 545
Query 541 CGATAAGAGAATTCAAGAACTCCGAATCCGTTGGAGTTCCCTTCCCAAAGCATCAACCAA 600
| || ||||| |||||||||||||| || |||||||||| ||||||| | | |||||||
Sbjct 546 CTATTAGAGAGTTCAAGAACTCCGAGTCAATTGGAGTTCCGTTCCCAACGAAGCAACCAA 605
Query 601 TGAGACTCTATGCGAGCCTTTGGGAAGCCGAGCATTGGGCCACAAGAGGAGGATTAGAGA 660
|||| || || ||||| || |||||||||||||||||||| ||||| ||||| |||||||
Sbjct 606 TGAGGCTTTACGCGAGTCTCTGGGAAGCCGAGCATTGGGCTACAAGGGGAGGGTTAGAGA 665
Query 661 AAACAGACTGGTCCAAA-GCTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCA 719
||||||| |||| |||| ||||||||||||||||||||||||||||||||||| || | |
Sbjct 666 AAACAGATTGGT-CAAAGGCTCCTTTCACCGCTTTCTACAGAAACTACAATGTTGAAGGA 724
Query 720 TGTGTATGGGCTCATGGAAAATCATCATGCTCTGCGCA--TTCCTCATGGTTCACTCAAG 777
|||||||||||| ||||||||||||| || || |||| |||||||||||||||||||
Sbjct 725 TGTGTATGGGCTAATGGAAAATCATCTTG-TCC-CGCAAATTCCTCATGGTTCACTCAAC 782
Query 778 TACTTGATTTCAAA-GGCAAGA-ATAGAGTGAAATGGGCACAGAGAAAGTACATGGTCTA 835
||| |||| |||| ||| ||| | ||| ||||| ||| |||||| ||||||||||||||
Sbjct 783 AACTCGATT-CAAACGGCCAGACA-AGAATGAAAGGGGTACAGAGTAAGTACATGGTCTA 840
Query 836 CAACTATTGCA-CTGATAAGAA-AAGATTTCCTCAAGGTGCTCCTCCAGAGTGCAGTTAA 893
||||||||| | | || || || ||| ||||||| ||||| |||| |||||||||||||
Sbjct 841 CAACTATTGTAAC-GACAA-AAGAAGGTTTCCTCGAGGTGTTCCTGTAGAGTGCAGTTAA 898
Query 894 ATCACTGATTGTTTGATTCACGAATAAATCA-TGTGGCATTGTTTTTGTAAC 944
|| ||||| |||||| || |||||| | | | |||||||| || |||||
Sbjct 899 ATTGTTGATTCTTTGATACATGAATAAGTTACT-TGGCATTGCCTTAGTAAC 949
> AT1G65310.1 | Symbols: ATXTH17, XTH17 | xyloglucan endotransglucosylase/hydrolase
17 | chr1:24257216-24258473 FORWARD LENGTH=1049
Length=1049
Score = 915 bits (495), Expect = 0.0
Identities = 753/874 (86%), Gaps = 32/874 (4%)
Strand=Plus/Plus
Query 87 TTTC-TCTTCGCTGCACAATATGAGCGTGTCTATGCTGGTAGCTTTCACAAGGACGTTCA 145
|||| |||| || ||||||| || || ||||||||| |||||||| ||||| ||||||||
Sbjct 89 TTTCTTCTT-GCGGCACAATCTGTGCATGTCTATGCGGGTAGCTTCCACAAAGACGTTCA 147
Query 146 GATACACTGGGGTGATGGCCGTGGAAAGATTCTCGACA-ATG-TCGGAAATCTTCTTTCT 203
|||||| |||||||||||||| |||||||||| ||||| | | | ||||| |||||||||
Sbjct 148 GATACATTGGGGTGATGGCCGCGGAAAGATTCACGACAGA-GAT-GGAAAACTTCTTTCT 205
Query 204 CTCTCGCTCGACAAATTCTCTGGTTCCGGTTTTCAGTCCCATCAAGAGTTTCTATATGGA 263
|||||||||||||||| |||||| |||||||||||||| | || |||||||| |||||
Sbjct 206 CTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGTCTAACCAGGAGTTTCTCTATGGC 265
Query 264 AAAGTTGAGGTTCAAATGAAACTTGTACCTGGTAACTCTGCTGGAACAGTGACAACATTC 323
|||| |||||||||||||||||||| |||||||| || |||||||||||||||||||||
Sbjct 266 AAAGCCGAGGTTCAAATGAAACTTGTTCCTGGTAATTCAGCTGGAACAGTGACAACATTC 325
Query 324 TATCTAAAATCGCCTGGAACTACGTGGGATGAGATAGATTTTGAGTTCTTGGGAAACATA 383
||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 326 TATCTAAAATCTCCGGGAACTACGTGGGATGAGATCGATTTCGAGTTCTTGGGAAACATA 385
Query 384 AGTGGTCATCCATATACACTTCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAA 443
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGTGGTCATCCATATACTCTCCATACTAATGTTTACACAAAAGGCACAGGAGACAAAGAA 445
Query 444 CAACAGTTTCATCTATGGTTTGACCCAACTGT-ACACTTTCACACTTATTGTATCATATG 502
||||| |||||||||||||| |||||||| || | |||||||||||||||| |||| |||
Sbjct 446 CAACAATTTCATCTATGGTTCGACCCAACCGTTA-ACTTTCACACTTATTGCATCACATG 504
Query 503 GAATCCCCAAAGGGTCATTTTTACAATAGATGGAATTCCGATAAGAGAATTCAAGAACTC 562
|||||| |||||| | |||||||| | ||||||||||| || ||||| ||||||||| |
Sbjct 505 GAATCCTCAAAGGATTATTTTTACGGTTGATGGAATTCCTATTAGAGAGTTCAAGAACCC 564
Query 563 CGAATCCG-TTGGAGTTCCC-TTCCCAA--AGCATCAACCAATGAGACTCTATGCGAGCC 618
||| | | ||||||| ||| ||||||| || | ||||||||||||||||| ||||| |
Sbjct 565 CGAGGC-GATTGGAGT-CCCGTTCCCAACTAG-A-CAACCAATGAGACTCTACGCGAGTC 620
Query 619 TTTGGGAAGCCGAGCATTGGGCCACAAGAGGAGGATTAGAGAAAACAGACTGGTCCAAAG 678
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 621 TTTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGAGAAAACAGATTGGTCAAAAG 680
Query 679 CTCCTTTCACCGCTTTCTACAGAAACTACAATGTGGATGCATGTGTATGGGCTCATGGAA 738
||||||| || ||||| || |||||||||||||| |||| ||||||||||||| ||||||
Sbjct 681 CTCCTTTTACTGCTTTTTATAGAAACTACAATGTCGATGGATGTGTATGGGCTAATGGAA 740
Query 739 AATCATCATGCTCTGCGCATTCCTCATGGTTCACTCAAGTACTTGATTTCAAA-GGCAAG 797
||||||| || || ||| ||||| |||||||||||||| ||| |||| | || ||| ||
Sbjct 741 AATCATCTTGTTCCGCGAATTCCCCATGGTTCACTCAAAAACTCGATT-CGAACGGCCAG 799
Query 798 A-ATAGAGTGAAATG-G-GCACAGAGAAAGTACATGGTCTACAACTATTGCACTGATAAG 854
| | ||| ||||| | | ||| || ||| |||||| |||||||||||||||| |||||
Sbjct 800 ACA-AGAATGAAAGGTGTGCAAAGT-AAA-TACATGATCTACAACTATTGCACCGATAA- 855
Query 855 AA-AAGATTTCCTCAAGGTGCTCCT-CCAGAGTGCAGTTAAATCACT-GATTGTTTGATT 911
|| ||| ||||||| ||| | |||| || ||||||| |||||| || |||| ||||||
Sbjct 856 AAGAAGGTTTCCTCGAGGAGTTCCTGCC-GAGTGCACTTAAATT-CTTGATTCTTTGATA 913
Query 912 CACGAATAAATCA-TGTGGCATTGTTTTTGTAAC 944
|| ||||| | | | |||||||| ||||||||
Sbjct 914 CATGAATATGTTACT-TGGCATTGCCTTTGTAAC 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5