BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494860
Length=2053
Score E
Sequences producing significant alignments: (Bits) Value
AT3G24080.1 | Symbols: | KRR1 family protein | chr3:8694961-86... 1090 0.0
> AT3G24080.1 | Symbols: | KRR1 family protein | chr3:8694961-8697124
REVERSE LENGTH=2164
Length=2164
Score = 1090 bits (590), Expect = 0.0
Identities = 818/924 (89%), Gaps = 32/924 (3%)
Strand=Plus/Plus
Query 1 TAGCATAATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGACGACCTTTCACA 60
|||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 14 TAGCATGATGGGGCGGCCGAAAGCGATACCAGATGATGACGACGGCGA--AC-TTTCACA 70
Query 61 GTTCACAGGCTTCGA-GCTCGATGAAAAATA-CA-TGAAGAGATTGGAGCACAACAAG-A 116
||||| ||| ||||| | ||||| || || | | ||||||||| |||||||||| |
Sbjct 71 GTTCAAAGGTTTCGATG-TCGAT-AACGATTTCGCT-AAGAGATTGTTGCACAACAAGGA 127
Query 117 ACCGCGAGGCTCTCCAGCGACACGAGGAGCAGAAGAAGAAAGGTCTCATC-GACGA-TCC 174
|| |||||| ||| |||||| |||| ||| |||| ||| |||||||| || | ||| |||
Sbjct 128 AC-GCGAGGATCTTCAGCGATACGAAGAGAAGAATAAGCAAGGTCTCTTCAG-CGAGTCC 185
Query 175 CGAGGAAGATTCTGAGCCTGAGTCTGAGCCGGATTCTGATCTCGGAAATCCAGAAAGCGA 234
|||||||| ||||| | ||||||||||||||||||||||| ||||||||||||||| |
Sbjct 186 -GAGGAAGAGCCTGAGACGGAGTCTGAGCCGGATTCTGATCTTGGAAATCCAGAAAGCAA 244
Query 235 TCTCAAATTCGTTGATTTGTTGCTTAAGGTAAAGAAAAAGGATCCTATTATTAAGAACAA 294
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 245 TCTCAAATTCGTTGATTTGTTGATTAAGGTAAAGAAAAAGGATCCTATTATTAAGGACAA 304
Query 295 AGATGCTAAGTTCTTTGAGTCtgatga-gag--tagtgaagaagatgaggttgatgagaa 351
|||||||||||||| ||||| |||||| ||| |||||||||||||||||||||| ||||
Sbjct 305 AGATGCTAAGTTCTATGAGTATGATGATGAGAGTAGTGAAGAAGATGAGGTTGATAAGAA 364
Query 352 ggataagaagaagaagaagaagaagaagaagaagaagTTGTATTTGAAAGATGTTCAAGC 411
||||| ||| || | |||||||||||||||||||| | |||||||||||||||||| ||
Sbjct 365 GGATACGAA-AA-A-GAAGAAGAAGAAGAAGAAGA--T-GTATTTGAAAGATGTTCAGGC 418
Query 412 ACATCATTTGCTTGAGGAAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAGGTTAG 471
||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 419 ACAGCATTTGCTTGAGGGAGGTCCTGAGTTTGTTGAGGAAGATGAGGAGAGGAAAGTTAG 478
Query 472 GACTTACGCTGAGCAGCAGGGCGAGTTGAGGAGAGCTGTTACGGATGCTTTGGAA-GCTG 530
||||||||||||| ||||| || ||||| |||||| || ||||||| |||| ||||
Sbjct 479 GACTTACGCTGAGGAGCAGAAAGAAACGAGGAAAGCTGTGACTGATGCTT-GGAAAGCTG 537
Query 531 GAGGGAAtgagagtgatggagatgatgattttttgagagttgtggagaaggaaggagatg 590
|||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAGGGAACGAGAGTGGTGAAGATGATGATTTTTTGAGAGTTGTGGAGAAGGAAGGAGATG 597
Query 591 atgatgtggagGTTGATCAGGAGTTAGCTAAGAAAATTGATGAGTATTTTGGTGAAGAAG 650
||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 598 ATGATGTGGAGGTTGATGAGGAGTTAGCTAAGAAAATGGATGAGTATTATGGTGATGAAG 657
Query 651 CTGAGGTTGTTGAGAATCAGTTTTTGAAAGATTATTTGGTGAAACAATTGTGGAAGGAGA 710
|||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 658 CTGAGGCTACTGAGAATCAGTTTTTGAAAGATTACTTGGTGAAACAGTTGTGGAAGGAGA 717
Query 711 AAGAGGAGAAGATTATAGATAAAGCAGAGTTGAAGGAGTTGAGTGAGGATGAGCAAGCTG 770
||||||||| | || || | ||| ||||||||||||||||||||||||||| || | |
Sbjct 718 AAGAGGAGAGGGTTCCAGGTGAAGAAGAGTTGAAGGAGTTGAGTGAGGATGATCACGAGG 777
Query 771 TTTGGGATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGAG--AG-AAGCTATAGGCATG 827
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 778 TTTGGGATCAGGAGGATTTTGAGGCAGGAAGACCGTTGGATTTATTAAACTATAGGCATG 837
Query 828 AAGA-GA-A-TGCTGGAGACATTGTTATGGGTCAGTCTAGGGTTGTGAAAGGGTCGGTGA 884
|||| || | |||||| |||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 838 AAGATGAGAATGCTGGGGACACTGTTATGGGTCAGTCTAGGGTTGTGGAAGGGTCGGTGA 897
Query 885 GGAAGAAGGATAACGCgaggaagg 908
||||||||||||| ||||||||||
Sbjct 898 GGAAGAAGGATAATGCGAGGAAGG 921
Score = 843 bits (456), Expect = 0.0
Identities = 540/580 (93%), Gaps = 8/580 (1%)
Strand=Plus/Plus
Query 1364 gaagaagaagaagaggaacaagaagaagtagatgaggagaatgaggcagagggtaagagg 1423
||||| ||||| || ||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1365 GAAGAGGAAGACGAAGAAGAAGAGGAAGTAGATGAGGAGAAGGAGGCAGAGGGTAAGAGG 1424
Query 1424 aagagaaagCGAAAAACGTCACTTGTAC-AAAGAGCCAAAGAAGCTTTGATGGAGGAGTA 1482
|||||||||||||||||||| ||||||| ||||| | |||||||||||||||||||||||
Sbjct 1425 AAGAGAAAGCGAAAAACGTCTCTTGTACAAAAGA-CGAAAGAAGCTTTGATGGAGGAGTA 1483
Query 1483 CTACAAGTTAGACTATGAGGATACAATTGGAGATTTGAAAACAAGGTTCAAGTATGCGAA 1542
||||||| |||| |||||||||||||||||||| |||| ||||||||| |||||||||||
Sbjct 1484 CTACAAGCTAGATTATGAGGATACAATTGGAGAATTGAGAACAAGGTTTAAGTATGCGAA 1543
Query 1543 AGTACAACCAAACAGATTCGAACTGGATACAGGAGAGATACTCACCTTAGATGACGCAGA 1602
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1544 AGTACAACCAAACAGATTTGAACTGGATACAGGAGAGATACTTACCTTAGATGACGCAGA 1603
Query 1603 CCTGAACCAATATGTGCCGTTGAAGAAGATGGCTCCTTATGTGGAAAAGGATTGGGAGGT 1662
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1604 GCTGAACCAATATGTGCCATTGAAGAAAATGGCTCCTTATGTGGAAAAGGATTGGGAGGT 1663
Query 1663 GAATAAGCACAAGGTTAAGGAGCAGAAACTTAAGATCAGGGAGTTGTGGGAGGGTAAACA 1722
||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1664 GAATAGGCATAAGGTCAAGGAGCAGAAACGTAAGATCAGGGAGTTGTGGGAGGGTAAACA 1723
Query 1723 CAATGAGAAGAAAAGCAAGAAGAGGAAGAAGACTGATGTTGCTGAGACGAAACCAACACC 1782
| |||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||
Sbjct 1724 CGATGAGAAGAAAAGCAAGAAGAGGAAGAAGAATGATGTTGTTGAGACCAAACCAACACC 1783
Query 1783 GAAAGCA-GAtgagg--aaggc-gaggctgaggctgaggctgaggctgaggctgaggctg 1838
||||| | | ||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1784 GAAAG-AGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTGAGGCTG 1842
Query 1839 aggctAAACTATCGAGAAAGGCGAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTG 1898
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1843 AGGCTAAACTATCGAGAAAGGCCAAGAGAAGAAGGCGTCAAGCAGAGAAGAAGCTTCCTC 1902
Query 1899 CTAGCAGAATGGCTGCTTATGGGAAGGCATAATAA-AAAA 1937
|||||||||||||||| |||||||| ||||||||| ||||
Sbjct 1903 CTAGCAGAATGGCTGCGTATGGGAAAGCATAATAATAAAA 1942
Score = 597 bits (323), Expect = 1e-169
Identities = 386/416 (93%), Gaps = 5/416 (1%)
Strand=Plus/Plus
Query 882 TGAGGAAGAAGGATAACGCgagg--a-aggagttgaagcgattgaagaatgttaagaaga 938
||| |||| ||||| | | |||| | ||||||||||||| |||||||||||||||||||
Sbjct 949 TGAAGAAGGAGGATGATGTGAGGAAAGAGGAGTTGAAGCGGTTGAAGAATGTTAAGAAGA 1008
Query 939 aggagatgaaggagaagatgaagaaggTGCTTTATGTTGCTGGTTTTAAGGATGGAGAAG 998
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1009 AGGAGATTAAGGAGAAGATGAAGAAGGTGCTTTCTGTTGCTGGTTTTAAGGATGGAGAAG 1068
Query 999 AGTGTCCGTTAGATGCGAAAGATTTTGATGATGAGTTTGATCCGGAGGAGTATGATAAGA 1058
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1069 AGTGTCCGTTAGATGCCAAAGATTTTGATGATGAGTTTGATCCTGAGGAGTATGATAAGA 1128
Query 1059 TGATGAAAGCTGCGTTTGATGATAAGTATTATGGTGCGGAGGATTCGGATTTGAATAGTG 1118
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1129 TGATGAAAGCTGCGTTTGATGATAAGTACTATGGTGAGGAGGATTCGGATTTGAATAGTG 1188
Query 1119 ATGAGGATGATGATGGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 ATGAGGATGATGATGGAGAGAAACCAGATTTTGACAAGGAAGATGAATTGCTTGGACTTC 1248
Query 1179 CCAAAGATTGGGATGTGACTAAAGGTGGGGATGTTTTTACAGCCGCTAGAGAAAAGGGTT 1238
| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 1249 CTAAAGATTGGGATGTGACTAAAGGTGGGGATGTTTTTGCAGCCGCAAGAGAAAAGGTTT 1308
Query 1239 TGAAGCACAAGGGGAACGTTTTGGGGGAT-GATGGagaagaagaggaagaagaaga 1293
||||||| |||| ||| | ||||| || |||| ||||||||| ||||| |||||
Sbjct 1309 TGAAGCATAAGGAAAACATGTTGGGT-ATTGATGAAGAAGAAGAAGAAGATGAAGA 1363
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101756504715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5