BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494862
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48090.1 | Symbols: ELP1 | EDM2-like protein1 | chr5:1948416... 2734 0.0
> AT5G48090.1 | Symbols: ELP1 | EDM2-like protein1 | chr5:19484165-19488657
FORWARD LENGTH=2781
Length=2781
Score = 2734 bits (1480), Expect = 0.0
Identities = 1779/1917 (93%), Gaps = 45/1917 (2%)
Strand=Plus/Plus
Query 1 ATGGAACAGAACTTCATTGTTAATAATATGATAGATGAGGAAAATAGCAGCGGTAGCGAT 60
||||||||| ||| ||||||| | ||||||| |||||||||||| |||||| ||||||||
Sbjct 597 ATGGAACAGGACTCCATTGTTGAGAATATGACAGATGAGGAAAACAGCAGCAGTAGCGAT 656
Query 61 GATGATTCTCAGACGAACCTGCAGTTTGATCCTGTCTGTTCTATTTGTGACAATGGTGGT 120
||||||||| || ||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 657 GATGATTCTGAGGCGAACCTGCAGTTTGATCCAGTATGTTCTATTTGTGACAATGGTGGT 716
Query 121 TATGTTCTGTGTTGTGAAGGAAGTTGCTTGAGATCTTTCCATCCAACCATAGCTGATGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 TATGTTCTGTGTTGTGAAGGAAGTTGCTTGAGATCTTTCCATCCAACCATAGCTGATGGA 776
Query 181 ATTGAGACAGAGTGCGAATCGCTAGGATTCACTTATAAGACTCAGATTCAAGCACTCGGG 240
||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||
Sbjct 777 ATTGAGACAGAGTGCGAATCGCTAGGATTCACTGATAAGACTCAAATTCAGGCACTCGGG 836
Query 241 ACCTATTTGTGTAACAACTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTG 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACCTATTTGTGTAACAATTGTCTCTATAAACAGCACCAGTGCTATGCTTGTGGCGAATTG 896
Query 301 GGATCCTCTGATGAAAATTCCTCTCAACAGGTCTTCCCTTGTC-CTGCGTCAAATTGTGG 359
||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||
Sbjct 897 GGATCCTCTGATGAAAATTTCTCTCAACAGGTCTTCCCTTG-CTCTGCGTCAAACTGTGG 955
Query 360 TCATTTCTACCATCC-CATATGTGTTGCAAGACTTCTCTGTGCTGATGATCAAATCAAAG 418
||||||||||||||| | ||| ||||||||||||||||||||||||||||||| |||||
Sbjct 956 TCATTTCTACCATCCTGA-ATGCGTTGCAAGACTTCTCTGTGCTGATGATCAAAACAAAG 1014
Query 419 CAGAAGAACTTCAAGCCAAGATTGCTGCTAGAGACTACTTTGCATGTCCTCTACACATAT 478
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||
Sbjct 1015 CAGAAGAACTTCAAGCCAAGATTGCTGCTAGAGACTGCTTTGCCTGTCCTCTACACACAT 1074
Query 479 GTAAAGTCTGTAACATGAGTGAAGACAAGAATGAATATGCGTTGCATTTTGCTGTATGCA 538
||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1075 GTAAACTCTGTAACATGAGTGAAGACAAGAATCAATATGCG-TGCATTTTGCTGTATGCA 1133
Query 539 GACGTTGCCCAACAGCTTATCACAGAAAATGTTTACCTAGGGAGATTACTTCTGAACTCA 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1134 GACGTTGCCCAACAGCTTATCACAGAAAATGTTTACCTAGGGATATTACTTCTGAACTCA 1193
Query 599 ACTCTGACGATGACACATTGCAAAGAGCTTGGGAAAGACTGCTTCCCTACAACCGCATTC 658
||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1194 ACTCTGACGATGAGACATTGCAAAGAGCTTGGGAAAGTCTGCTTCCTTACAACCGCATTC 1253
Query 659 TTATATATTG----------------TTT------GGCCCATGAGATAGACATTCATATT 696
|||||||||| ||| |||||||||||||||| || ||||
Sbjct 1254 TTATATATTGTTTCTTTTCATAAACTTTTGAACAGGGCCCATGAGATAGACGGTCTTATT 1313
Query 697 CTTACTCCAGCTAGAGACCACTTAATTTTTCCTGATATATCTGGACAAAGAAGAACACGA 756
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1314 CTTACTCCAGCTAGAGACCACTTAGTTTTTCCTGATGTATCTGGACAAAGAAGAACACGA 1373
Query 757 AGTCACGGGCTAGAACAGTTCAAAGAGGATGTTCCGAGTATGGAGACAGATCCA-AACCA 815
||||||||||||| |||||||||||||||||||| | |||||||||| ||| || ||
Sbjct 1374 AGTCACGGGCTAGCACAGTTCAAAGAGGATGTTCTGGGTATGGAGACGGAT-CATTGTCA 1432
Query 816 TCGTGAGGGTCTATTTACTCATCTTGGTGTTAGTGACCCTTATAAGAAACCAAAGAAAGA 875
|| |||||||||||||||| ||||||| ||| |||||||||| |||||||||| |||||
Sbjct 1433 TCATGAGGGTCTATTTACTGGTCTTGGTATTACTGACCCTTATGAGAAACCAAAAAAAGA 1492
Query 876 TATTAG-TGTCAATGATGTGGAACAGAGGGTGATGGGTATAATCGACGAAGTGGAATCCT 934
|||||| || | |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1493 TATTAGCTG-CGATGAGGTGGAACAGAGGGTGATGGGTATAATCGATGAAGTGGAATCCT 1551
Query 935 CGTTTAACTTTGACGAGTTCGTTAAGTCCCGTAGGCCAACCCATATAAAATCCTACCACT 994
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1552 CGTTTAACTTTGATGAGTTCGTTAAGTCTCGTAGGCCAACCCATATAAAATCCTACCACT 1611
Query 995 CAGGAAA-TGATATCAGTAAGAACATCACAACAGGATTGGTTCAGACTCATGTCAATGCT 1053
||||||| | || | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1612 CAGGAAACT-ATTTTAGTAAGAACATCACAACAGGATTGGTTCGGACTCATGTCAATGCT 1670
Query 1054 GCTCGAGCTGCCTTAAAGATGTTTGAAGAAGGGCGTGACAAAGATGCAAGAGCTATATTT 1113
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1671 GCTCGAGCTGCCTTAAAGATGTTTGAAGAAGGGCGTGACAGAGATGCAAGAGCTTTATTT 1730
Query 1114 GACCCAGATATCCTACTCCAACTCATGAAGCATAAGACGAAGCTTGAAA--T----TTAT 1167
|||||||||| |||||||||||||||||||||||||| |||||||||| | || |
Sbjct 1731 GACCCAGATAGCCTACTCCAACTCATGAAGCATAAGAAAAAGCTTGAAATTTCGCCTTTT 1790
Query 1168 CT---T--T-CGCGCTACACGTCGTTTGGTCGTCACTTCACAAATCCAGAGAAGCTTAAA 1221
|| | | ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1791 CTCCATGGTATGCGCTACACATCGTTTGGTCGTCACTTCACAAATCCAGAGAAGCTTAAA 1850
Query 1222 GAGATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGGTAGTCGACTTTTGC 1281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GAGATTGTAGAGAGGCTCCACTGGTATGTCGAAAATGGCGATACGGTAGTCGACTTTTGC 1910
Query 1282 TGTGGCTCCAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAACA 1341
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1911 TGCGGCTCTAATGACTTCAGTTGTTTGATGAAAGAAAAGCTTATGGAAACGGGGAAAATA 1970
Query 1342 TGCTTCTTCAAAAACTTTGATCTCATTCAACCTAAGAACAACTTTAATTTTGAGAAGAGA 1401
||||||| ||||||||| |||||||| | ||||||||||||||| |||||||||| ||||
Sbjct 1971 TGCTTCTACAAAAACTTAGATCTCATCCCACCTAAGAACAACTTCAATTTTGAGATGAGA 2030
Query 1402 GACTGGTTGAGTGTGAAGCCAGAAGAGTTACCCGATGGCTCTCAACTGATAATGGGATTG 1461
|| ||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 2031 GATTGGCTGAGTGTGAAGGAAGAAGAGTTACCCGATGGCTCTCAACTGATTATGGGATTG 2090
Query 1462 AACCCGCCCTTCGGTCACAAAGCCAGTCTTGCTAACACTTTCATTAAGAAGGCCCTCGAG 1521
|||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 AACCCGCCTTTTGGTTACAAAGCCAGTCTTGCTAACACTTTCATTAAGAAGGCCCTCGAG 2150
Query 1522 TTTAAACCGAAGATCTTAATCCTCATCGTACCAACTGAAACAAAAAGGGTCGATGCGATT 1581
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2151 TTTAAACCGAAGATCTTAATCCTCATCGTACCAAGTGAAACAAAAAGGGTCGATGCGATT 2210
Query 1582 GCTGATTATGAGTTGATTTGGGAGGACAGAAATTTACTTACTGGAATGTCGTTCTACTTG 1641
| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2211 GATGATTATGAGTTGATTTGGGAGGACAGAAATTTACTTGCTGGAATGTCGTTCTACTTG 2270
Query 1642 CCCGGGTCAGTAGATGTGAATGATAAAACGATAGAGCAGTGGAACAATATACCGCCACCT 1701
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2271 CCTGGGTCAGTAGATGTGAATGATAAAACGATAGAGCAGTGGAACAATATAACGCCACCT 2330
Query 1702 CTGTACCTTTGGAGCCGAAGGGACTGGAGTAGAAGCCACAAGACCACAGCACTTCAACAG 1761
|| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||
Sbjct 2331 CTATACCTTTGGAGCCGAAGGGATTTGAGTAGAAGCCACAAGACCACAGCAGTTCAACAG 2390
Query 1762 GGTCACATAACACAGATGCATCACTTCACCTACAATGGCGATTGTCACCACACAGAGATC 1821
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2391 GGTCACATAACACAGATGCATCACTTCACCTACAATGGCGATAGTCACCACACAGAGATC 2450
Query 1822 CCTCAAGGTGGTGATGATATTGATATGGTACAAGACATGGAGATATCCCCTACCTGA 1878
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2451 CCTCAAGGTGATGATGATACTGATATGGTACAAGACATGGAGATATCCCCTACCTGA 2507
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92971409340
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5