BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494864
Length=2093
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48130.1 | Symbols: | Phototropic-responsive NPH3 family pr... 3090 0.0
> AT5G48130.1 | Symbols: | Phototropic-responsive NPH3 family
protein | chr5:19516102-19518513 FORWARD LENGTH=2130
Length=2130
Score = 3090 bits (1673), Expect = 0.0
Identities = 1966/2105 (93%), Gaps = 29/2105 (1%)
Strand=Plus/Plus
Query 1 TCCTCTTGTTTTGTGGATCCTAGAACCC-TTTTCTTCCTCTTCAATCCCCAAAACACGCA 59
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 3 TCCTCTTGTTTCGTGGATCCTAGAACCCTTTTTCTTCCTCTTCAATCCCCAAAACACGCA 62
Query 60 ACTTTCTTCTTCAAAAATGTAACAGTGAAGAAGAATAAATGGATGACCAAGTGTCTCTAT 119
|||||||||||||||||| ||| |||||||||||||||||| | |||||| |||||| |
Sbjct 63 ACTTTCTTCTTCAAAAATATAATAGTGAAGAAGAATAAATGAACGACCAAATGTCTCCAG 122
Query 120 TTTCATCATTACCATATTGGTTTTGATATACTTTATCTACATAGTTTTCAAAAACCACAA 179
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 123 TTTCATCA-TACCATATTGGTTTTGATATACTTTATCTACTTAGTTTT-------CACAA 174
Query 180 GTTATATACTCAATAATGGAAACTTGCAGCATCAAGGATGGTTCGTCCGTCGCCTCCAGC 239
|||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||
Sbjct 175 TTTATATACTCAATAATGGAAACTTTCAGCCTCAAGGATTGTTCGTCCGTCGCCTCCAGC 234
Query 240 CCGATTTCTTCTCCGAATATTAGTACCCTTTTGAAAATCAAAGTTCTTTCTTGGAGTAAA 299
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 235 CCGATTTCTTCTCCAAATATCAGTACCCTTTTGAAAATCAAAGTTCTTTCTTGGAGTAAA 294
Query 300 GAGACCGGTCTACCTGCGTCAGTACATGTTCGAGTGTGCAACAGGAGTTTTAACCTTCAC 359
|||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 295 GAGACCGGTCTACCCGCGTCAGTACATGTTCGAGTTTGCAACAAGAGTTTTAACCTTCAC 354
Query 360 AAGACG-CTCTTGTGTACAAAGAGCGGATATTTTAAGGAAAGAGAAGATCAGCTATCGGA 418
|||| | ||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 355 AAGA-GTCTCTTGTGTGCAAAGAGCGGATATTTTAAGGAAAGAGAGGATCAGCTATCGGA 413
Query 419 GATCGAGATACCACAAGAGTTTCCTGGTGGAGCAGAGACCTTTGAGAAGATTATGCTTTT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GATCGAGATACCACAAGAGTTTCCTGGTGGAGCAGAGACCTTTGAGAAGATTATGCTTTT 473
Query 479 CATATATGGCTGTCCAACTTTAATACATCCATTCAACATCGCTGGGCTTA-GATGTGCAG 537
||| |||||||||||||||||||||||||| |||||||||||||| || | |||||||||
Sbjct 474 CATTTATGGCTGTCCAACTTTAATACATCCTTTCAACATCGCTGGACT-ACGATGTGCAG 532
Query 538 CTCAATTTCTTGAAATGACAGAACAACATTCGACGGGAAACCTCTGCGAAAGATTTGACC 597
|||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 533 CTCAATTTCTTGAAATGACAGAGCAACATTCGACGGGTAACCTCTGCGAGAGATTTGACC 592
Query 598 TATATCTAAACCAAGTTGTCTTGCAAAACTGGGATGATACGTTAGTTGTTCTGAAGAAAT 657
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 593 TTTATCTAAACCAAGTTGTCTTGCAAAACTGGGATGACACGTTAGTTGTTCTGAAGAAAT 652
Query 658 GTCAGGATCTATTACCTTGGTCTGAAGATTTACTAATCGTGAGCCGGTGCATAGAGTCTC 717
||||||||||| | ||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 653 GTCAGGATCTAGTGCCTTGGTCTGAAGATCTACTCATCGTGAGCCGGTGCATTGAGTCTC 712
Query 718 TGGCTTTCACGGCTTGTATGGAGATTCTTGATCCGGAAAGACGAAGAGAAAAGCCGGT-A 776
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct 713 TGGCTTTCACGGCTTGTATGGAGATTCTCGATCCCGAAAGACGAAGAGAAAAGCCAGTCA 772
Query 777 GTCATGCTTGAAGGTTTGGTGAATCAACCATGGGAATATACAACCGTAGAGAAAATTATA 836
|||||||||||||| ||||||||||||||||||||||||||| | |||||| ||| |||
Sbjct 773 -TCATGCTTGAAGGTATGGTGAATCAACCATGGGAATATACAAACATAGAGAGAATAATA 831
Query 837 AACCAAGATACTTGGATCAAAGACCTCACAGATCTTCCATTCGAATTCTTCAGACAAG-T 895
||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||| |
Sbjct 832 AACCAAGATACTTGGATCAAAGACCTCACGGATCTTCCATTCGAATTCTTCAAA-AAGAT 890
Query 896 GATTGGGTCACTTAGAAGACAAGGGATGAAAGAAAGATATGTAAGTCCATTGATCGTCTT 955
|||||||| |||||||||||||| ||||||||||||||||||||||||||| ||| | |
Sbjct 891 TATTGGGTCGCTTAGAAGACAAGGTATGAAAGAAAGATATGTAAGTCCATTGGTCGCCCT 950
Query 956 TTATGCCAGCAAATCTGTAATACCTGAAGGTCAAAGTAATACTGATATTCTGCAAAGAGC 1015
||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 951 TTACGCCAGTAAATCTGTAATACCTGAAGGTCAAACTAATACTGATATTCTGCAAAGAGC 1010
Query 1016 TCTTGATCTGCTTCTTACAAGAGACAAGGCATATAGGTTTGTTCCAGTCGGGTTTTATTT 1075
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1011 TCTAGATCTGCTTCTTACAAGAGACAAGGCATATAGGTTTGTTCCAGTTGGGTTTTATTT 1070
Query 1076 TGCGTGTCTCGCACACAATTTGAAGCATGAAACTGTGTTGAAGCTGCAAGATCAGATTGT 1135
||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1071 TGCGTGTCTTGCACACAATTTGAAGCATGACACTGTGTTAAAGCTGCAAGATCAGATTGT 1130
Query 1136 ATCTCTTCTTCACATTGCACACACC-GAAAACTTTATATACCCGAAAGCCGGGAACGGGC 1194
|||||||||||||| ||| || ||| |||||||||||||||||||||||||||||| |||
Sbjct 1131 ATCTCTTCTTCACACTGCCCA-ACCCGAAAACTTTATATACCCGAAAGCCGGGAACAGGC 1189
Query 1195 AAGTTGCTTTCAGTCAGGAGTTGCTTACAATGGAAAGCCTGTTTTCAACATATGTATCAA 1254
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1190 AAGTTGCTTTCAGTCAGGAGTTGCTTACAATGGAAAGCCTGTTTTCAGTATATGTATCAA 1249
Query 1255 CAGAATCAGAACGACATCTTACTTCCTCCCCAAGCAACATGAGAGTTGGAAAATTGTGGG 1314
||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 1250 CAGAATCGGAACGCCATCTTACTTCCTCCTCAAGCAACGTGAGAGTTGGAAAACTGTGGG 1309
Query 1315 ATGTTTATCTCTCTCGTTTACCATATGATCAAGAGATGAAAACAACAAGGTTCATTGAGC 1374
|| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1310 ATATTTTTCTCTCTCGTTTACCGTATGATCAAGAGATGAAAACTACAAGGTTCATTGAGC 1369
Query 1375 TGATTGAGACAGTCCCAATGTCATTCAGAGAGAGTCATGACCAACTCTATCTTGCAGTAA 1434
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1370 TGATTGAGACAGTCCCAATGTCATTCAGAGAGAGTCATGACCAACTTTACCTTGCAGTAA 1429
Query 1435 ACGCATTTCTTCAGGTACATACAACCATATATCAGGAAGAAAAAGGATCAATCTGCAGTT 1494
|||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1430 ACGCATTTCTTCAGGTACATACAAATATATCTCAAGAAGAAAAAGGATCAATCTGCAGTT 1489
Query 1495 ACCTAAACTCCCAAAAACTATCACAAGCAA-CGTCCCTCCAACTCGTGAAAAACGAGCAA 1553
||||||||| |||||| |||||||||| || |||||||| ||||||| ||||||||| ||
Sbjct 1490 ACCTAAACTGCCAAAAGCTATCACAAG-AAGCGTCCCTCGAACTCGTTAAAAACGAGAAA 1548
Query 1554 ATGCCATTACGTTTGGTTGTCCAAGCTCTCTTTATCCAACAGCTCAACACACACCAAGCT 1613
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1549 ATGCCATTACGTTTGGTTGTCCAAGCTCTCTTTATCCAACAGCTGAACACACACCAAGCT 1608
Query 1614 TTCAAAGACTGTTCTGACTCATTCAGATTCACAAACTCTGCAGACTTCTCCGGTAGTGTT 1673
|| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1609 TTTAAAGACTGTTCGGACTCATTCAGATTCACAAACTCTGCAGACTTCTCTGGTAGTGTT 1668
Query 1674 GTTCCAAGCTCAAGACCCTTAACATCCCAACAAAGCCCTTGCACTGATGATGAAACCGGG 1733
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1669 GTCCCAAGCTCAAGACCCTTAACTTCCCAACAAAGCCCTTGCACTGATGATGAAAC-GGG 1727
Query 1734 GC-AAGAAACAGGCCGTTATGCTTCTTGATGCAGAAAGATGCAACATTGGATGAGTACGA 1792
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1728 GCCAAGAAACAGACCGTTATGCTTCTTGATGCAGAAAGATGCAACATTGGATGAGTTTGA 1787
Query 1793 GTCAACGAGCTTTAGAATCCATAACCTCGAAGAGCAACTAGTTTCTTTAAAGAAGAGCCT 1852
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GTCAACGAGCTTCAGAATCCATAACCTCGAAGAGCAACTAGTTTCTTTAAAGAAGAGCCT 1847
Query 1853 TCAGTCCCACAACAACCAAAAGAAGCCAACTTGCCTTGGAAAAAGATCAGCGAGTAGAAA 1912
||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1848 TCACTCCCACGACAACCTAAAGAAGCCAAATTGCCTTGGAAAAAGATCAGCGAGTAGAAA 1907
Query 1913 CAAGAACAC-TTTCGGCCAAGTCAAAACGGCTTGTATTGGCTCTGTAAGCTTTACTTCAC 1971
||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1908 CAAAAACACCTTT-GGCCAAGTCACAACGGCTTGTATTGGCTCTGTAAGCTTTACTTCAC 1966
Query 1972 AGAGAAATTATGCCAATAAGCTGCTCCGGGTACTACGTAGAGTTATCTTGTTTGGAAGTA 2031
||||||| ||||| |||| ||| |||| | | ||||||||||||| ||||||||||||||
Sbjct 1967 AGAGAAAATATGCAAATAGGCTACTCCAGATTCTACGTAGAGTTAACTTGTTTGGAAGTA 2026
Query 2032 GAAAAACTAATAGAA--AAA-CAGATGAGAGTGAGAGATGAAACATGTATCAAATGTAAG 2088
|||||||||||||| ||| ||| ||||||||| ||||||| ||| |||||||||||||
Sbjct 2027 GAAAAACTAATAGATCGAAAGCAGGTGAGAGTGAAAGATGAA-CATTTATCAAATGTAAG 2085
Query 2089 TATAA 2093
|||||
Sbjct 2086 TATAA 2090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103764526515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5