BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494865
Length=1387
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48140.1 | Symbols: | Pectin lyase-like superfamily protein... 2200 0.0
AT3G07840.1 | Symbols: | Pectin lyase-like superfamily protein... 819 0.0
AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein... 56.5 7e-07
AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein... 56.5 7e-07
> AT5G48140.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:19518770-19520528 REVERSE LENGTH=1441
Length=1441
Score = 2200 bits (1191), Expect = 0.0
Identities = 1326/1390 (95%), Gaps = 13/1390 (1%)
Strand=Plus/Plus
Query 1 aaaaataaaaataaataaaaGTAATCACTAGCTAGTGACTAAAATAAATCCCAATTATGG 60
|||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 62 AAAAAT-AAAGTAAATAAAAGTAATCACTAGCTAGTGACTAAACTAAATCCCAATTATGG 120
Query 61 GTCGTGTACATTTTGGAGTATCAGCATTCTTTGTTTTTTGTTTGTTATGTTTATCAGCTA 120
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 GTCGTGTACATTTTGGTGTATCAGCATTCTTTGTTTTTTGTTTGTTAGGTTTATCAGCTA 180
Query 121 ATGCAAAGGTCTTCAACATTGGTTCTCCTCCAGGTTCTGATATCACCAACGCATTGTTGA 180
|||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 181 ATGCAAAGATCTTCAATATTAATTCTCCTCCAGGTTCTGATATCACTAACGCATTGTTGA 240
Query 181 AAGCATTCAATGAGGCATGCCAATTCCCGACAAAGAGCACCGTTCTGATCCCAAAAGGTG 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 AAGCATTCAATGAGGCATGCCAATTCCCGACAAAGAGCACCGTTATGATCCCAAAAGGTG 300
Query 241 AATACAAGCTTGGGGAGATCGTGATGATGGGTCCATGCAAAGCTCCTATAACGATTGCTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 301 AATACAAGCTTGGGGAGATCGTGATGATGGGTCCATGCAAAGCTCCTATAAGGATTGCTC 360
Query 301 TTCAAGGTACCGTGAAAGCCGACGGTAACGCTAATGGAAAGGAGAAATGGGTCGCTTTCC 360
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTCTAGGTACCGTGAAAGCTGACGGTAACGCTAATGGAAAGGAGAAATGGGTCGCTTTCC 420
Query 361 GCAATATTGATGGGTTTAAGTTGAACGGAGGTGGTGTTTTCGACGGTGAAGGAAACGCAG 420
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCAACATTAATGGGTTTAAGTTGAACGGAGGTGGTGTTTTCGACGGTGAAGGAAACGCAG 480
Query 421 CATGGAGGGTCAACAACTGCCACAAGACTTTCAACTGCAAGAAACTCCCCATCAGCATCC 480
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 CTTGGAGGGTCAACAACTGCCACAAGACTTTCAACTGCAAGAAGCTCCCCATCAGCATTA 540
Query 481 GTTTTGATTTCGTGACCAACGCGAAAATTAGAGGCATAACCTCCTTAGATGCAAAGAACT 540
| ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 541 GGTTTGATTTCGTCACCGACGCGAAAATTAGAGGCATTACCTCCTTAGATGCAAAGCACT 600
Query 541 TCCACATTAACGTGATCGGTGCAAAGAACATGACATTCGAAGACGTCAAGATCATCGCCC 600
||||||||||||| || || ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 601 TCCACATTAACGTCATTGGAGCAAAGAACGTGACATTCGAAGACGTCAAGATCATTGCCC 660
Query 601 CTGCAGAGAGTCCCAACACCGATGGTATCCACGTTGGAAGAAGTGACGGAATCAAGATCA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTGCAGAGAGTCCCAACACCGATGGTATCCACGTTGGAAGAAGTGACGGAATCAAGATCA 720
Query 661 TCAATTCATTTATCTCCACAGGAGATGACTGTGTCTCTGTTGGAGATGGAATGAAGAACC 720
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 TCAATTCATTTATCTCCACAGGAGATGACTGTGTCTCTGTTGGAGATGGGATGAAGAACC 780
Query 721 TTCTTGTCGAAAGAGTTACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGAA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TTCTTGTCGAAAGAGTTACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGAA 840
Query 781 GGTACAGCCACGAGGAAAACGTCAGTGGCATCAAGATCATCAACTGCACCCTCCAAGAGA 840
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 841 GGTACAGCCACGAGGAAAACGTTAGTGGCATCAAGATCATCAACTGCACTCTCCAAGAGA 900
Query 841 CTGACAATGGGCTAAGGATCAAGACATGGCCTTCTGCAGCTTGTACCACAACCGCCTCCG 900
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 901 CTGACAATGGTCTAAGGATCAAGACATGGCCTTCTGCTGCTTGTACCACAACCGCCTCCG 960
Query 901 ATATCCATTTCGAGAACATCCTCCTCAAGAACGTCAGCAACCCCATCCTCATCGACCAAG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATATCCATTTCGAGAACATCCTCCTCAAGAACGTCAGCAACCCCATCCTCATCGACCAAG 1020
Query 961 AGTACTGCCCATGGAACCAATGCAACAAGCAGAAACCATCAACAATCAAGTTGGCCAACA 1020
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 AGTACTGCCCATGGAACCAATGCAACAAGCAGAAACCATCAACGATCAAGTTGGCCAACA 1080
Query 1021 TAAGCTTCAAGAAGATCAGAGGAACATCAGGAAACAAAGACGCGGTGAAGCTTTTGTGCA 1080
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1081 TTAGCTTCAAGAAGATCAGAGGAACATCAGGAAACAAAGACGCAGTGAAGCTTTTGTGTA 1140
Query 1081 GCAAGGGACATCCATGTCAGAACGTGGAGGTAGGTGACATTAACATCAAGTATACCGGAG 1140
|||||||| |||||||||||||||| ||||| |||||| | |||||| ||||||||||||
Sbjct 1141 GCAAGGGATATCCATGTCAGAACGTTGAGGTTGGTGACGTGAACATCCAGTATACCGGAG 1200
Query 1141 CCGACGGTCCAGCGACTTTCCAATGCTCAAACGTATCACCAAAGCTTGTGGGAACTCAGA 1200
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1201 CAGATGGTCCAGCGACTTTCCAATGCTCTAACGTATCACCAAAGCTTGTGGGAACTCAGA 1260
Query 1201 TTCCAAAAGCGTGTAGCAGCCCGGTGACAAAGCCACCAAAGTAGAAAGTGTGTATATATT 1260
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1261 TTCCAAAAGCGTGTAGCAGCCCGGTGACAAAGCCACCAAAGTAGAA--TGTGTATATATT 1318
Query 1261 ATATGCTCA-TACACAATCTAAATGTATACCCT-AGTGTATGCTGTACGTATGCTTTCAA 1318
||| |||| ||||||||||||||||| ||||| ||||||||||||| | |||| |||
Sbjct 1319 ATAAACTCAATACACAATCTAAATGTACACCCTTAGTGTATGCTGTA--T--GCTT-CAA 1373
Query 1319 TTGATATCTTTGTGAAATAACCTAtttttttGAGCTTTTGGCTATATTGTAAGAAATGAA 1378
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1374 TTGATATCTTTGTGAAATGACCTATTTTTTTGAGCTTTTGG-TATATTGTAAGAAATGAA 1432
Query 1379 TCC-TTCTTG 1387
|| ||||||
Sbjct 1433 -CCATTCTTG 1441
> AT3G07840.1 | Symbols: | Pectin lyase-like superfamily protein
| chr3:2501893-2503565 REVERSE LENGTH=1296
Length=1296
Score = 819 bits (443), Expect = 0.0
Identities = 915/1138 (80%), Gaps = 51/1138 (4%)
Strand=Plus/Plus
Query 110 TTTATCAGCTAATGCAAAGGTCTTCAACATTGGTTCTCCTCCAGGTTCTGATATCAC-CA 168
||| ||||| ||||| |||| |||||| ||||| | |||||||||||||||| || |
Sbjct 145 TTT-TCAGCCAATGCTGAGGTGTTCAACGTTGGTGGTTCTCCAGGTTCTGATATTACTC- 202
Query 169 ACGCA-TTGTTGAAAGCATTCA-ATGAGGCATGCCAATTC-CCGACAAAGAGCACCGTTC 225
| ||| || |||||||||||| || | ||||||||| | |||||| ||||| ||
Sbjct 203 AGGCACTT-CTGAAAGCATTCACATCA-GCATGCCAA-GCTCCGACAGCGAGCAAGGTGG 259
Query 226 TGATCCCAAAAGGTGAATACAAGCTTGGGGAGATCGTGATGATGGGTCCATGCAAAGCTC 285
||||| |||| ||||| | ||||||||| ||||||| ||||| ||| |||||||||||||
Sbjct 260 TGATCACAAAGGGTGAGTTCAAGCTTGGTGAGATCGAGATGACGGGCCCATGCAAAGCTC 319
Query 286 CTA-T-AACGAT-TGCTCTTCAAGGTAC-CGTGAAAGCCGACGGTAACGCTA---ATGGA 338
| | | | ||| | || |||||||| | | ||||| || || || |||| | ||
Sbjct 320 C-AGTCGA-GATCAAC-CTCCAAGGTACTC-TCAAAGCTGATGGAAAAGCTATCCAGGGG 375
Query 339 AAGGAGAA-ATGGGTCGCT-TTCCGCAA-TATTGATGGGTTTAAGTTGAACGGAGGTGGT 395
||||| || |||||||| | |||| || ||| |||| |||||||| |||||||||||
Sbjct 376 AAGGA-AAGATGGGTCG-TCTTCC-TAAGAATTAATGGCTTTAAGTTAAACGGAGGTGGA 432
Query 396 GTTTTCGACGGTGAAGGAAACGCAGCATGGAGGGTCAACAACTGCCACAAGACTTTCAAC 455
| |||||||||||||| || ||||| ||||| ||||| ||||| |||||||||||| |
Sbjct 433 ATCTTCGACGGTGAAGGCAATGCAGCTTGGAGAGTCAATAACTGTCACAAGACTTTCGAG 492
Query 456 TGCAAGAAACTCCCCATCAGCATCCGTTTTGATTTCGT-GACCAACGC-GAAAATTAGAG 513
||||||||||| |||||||| || | ||||||||||| || || || | | |||||||
Sbjct 493 TGCAAGAAACTTCCCATCAGTATAAGGTTTGATTTCGTGGA-GAATGCTG-AGATTAGAG 550
Query 514 GCATAACCTCCTTAGATGCAAAGAACTTCCACATTAACGTGATCGGTGCAAAGAACATGA 573
|||| |||| ||||||| |||||||||||||| ||||| |||| || ||||||||||
Sbjct 551 ACATATCCTCGATAGATGCTAAGAACTTCCACATAAACGTTCTCGGCGCCAAGAACATGA 610
Query 574 CATTCGA-AGACGTCAAGATCATCGCCCCTGCAGAGAGTCCCAACACCGATGGTATCCAC 632
| || || | |||||||| ||||||| || |||||||| |||||||| || ||||||||
Sbjct 611 CCTTTGATA-ACGTCAAGGTCATCGCTCCGGCAGAGAGCCCCAACACTGACGGTATCCA- 668
Query 633 GTT-GGAAGAAGTGACGGAATCAAGATCATCAATTCAT-TTATCTCCACAGGAGATGACT 690
|| ||||||||||| ||| |||||||| |||| || | || |||| ||||||||||
Sbjct 669 TTTGGGAAGAAGTGAAGGAGTCAAGATCCTCAACTC-TAAGATAGCCACCGGAGATGACT 727
Query 691 GTGTCTCTGTTGGAGATGGAATGAAGAACCTTCTTGTCGA-AAGAGTTACATGCGGTCCG 749
| |||||||||| ||||| ||||||||||| | ||||| || |||| ||||||||
Sbjct 728 GCATCTCTGTTGGGGATGGGATGAAGAACCTCCACGTCGAGAA-CGTTATGTGCGGTCCT 786
Query 750 GGACATGGAATCAGTATTGGAAGTCTTGGAAGGTACAG-CCACGAGGAAAACGTCAGTGG 808
||||| ||||||||| | || ||||||||||||||| | || ||| || | |||| ||
Sbjct 787 GGACACGGAATCAGTGTCGGGAGTCTTGGAAGGTAC-GTGCATGAGCAAGATGTCACAGG 845
Query 809 CATCA-AGATCATCAACTGCACCCTCCAAGAG-ACTGACAATGGGCTAAGGATCAAGACA 866
||| | | || | ||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 846 CATTACTG-TCGTGAACTGCACCCTTC-AGGGAACTGACAATGGGCTAAGGATCAAGACA 903
Query 867 TGGCCTTCTGCAGCTTGTACCACAACCGCCTCCGATATCCATTTCGAGAACATCCTCCTC 926
||||| ||||| ||||| |||| |||||||| | ||| ||||| ||||||||| ||||
Sbjct 904 TGGCCATCTGCGGCTTGCGCCACCACCGCCTCTGGTATTCATTTTGAGAACATCATCCTT 963
Query 927 AAGAACGTCAGCAACCCCATCCTCATCGACCAAGAGTACTGCCCATGGAACCAATGCAAC 986
|| ||||| |||||||| |||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 964 AACAACGTTAGCAACCCAATCCTCATTGACCAGGAGTACTGCCCTTGGAACCAGTGCAAC 1023
Query 987 AAGCAGAAACCATCAACAATCAAGTTGGCCAACATAAGCTTCAAGAAGATCAGAGGAACA 1046
|||||||||||||| || || ||| ||| |||||||||||||||| || |||||||||
Sbjct 1024 AAGCAGAAACCATCGACGATTAAGCTGGTGGACATAAGCTTCAAGAATATTAGAGGAACA 1083
Query 1047 TCAGGAAACAAAGACGCGGTGAAGCTTTTGTGCAGCAAGG-GACATCCATGT-CAGAACG 1104
||||| ||||| ||||| |||||||| ||||||||||||| | ||||||||| | ||| |
Sbjct 1084 TCAGGGAACAAGGACGCAGTGAAGCTATTGTGCAGCAAGGCG-CATCCATGTGC-GAATG 1141
Query 1105 TGGAGGTAGGTGACATTAACATCAAGTATACCGGAGCCGACGGTCCAGCGACTTTCCAA- 1163
| ||| | || |||||||| | |||| | |||||||| |||||| |||||||| |
Sbjct 1142 TTGAGATTGGAAACATTAACCTTGAGTACAAGGGAGCCGATGGTCCACCGACTTTC-ATG 1200
Query 1164 TGCTCAAACGTATCACCAAAGCTTGTGGGAACTCAGATTCCAAAAGCGTGTAGCAGCC 1221
||||||||||| || || ||||||||||||||||||| || || || |||||| |||
Sbjct 1201 TGCTCAAACGTTTCCCCTAAGCTTGTGGGAACTCAGAACCCGAAGGCTTGTAGC-GCC 1257
> AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:8327312-8329622 FORWARD LENGTH=1453
Length=1453
Score = 56.5 bits (30), Expect = 7e-07
Identities = 33/34 (97%), Gaps = 1/34 (3%)
Strand=Plus/Plus
Query 750 GGACATGGAATCAGTATTGGAAGTCTTGG-AAGG 782
||||||||||||||||||||||||||||| ||||
Sbjct 920 GGACATGGAATCAGTATTGGAAGTCTTGGGAAGG 953
> AT1G70500.1 | Symbols: | Pectin lyase-like superfamily protein
| chr1:26566579-26568729 REVERSE LENGTH=1407
Length=1407
Score = 56.5 bits (30), Expect = 7e-07
Identities = 39/43 (91%), Gaps = 1/43 (2%)
Strand=Plus/Plus
Query 737 TACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGA 779
||| || || || ||||||||||||||||||||||||||||||
Sbjct 838 TAC-TGTGGACCAGGACATGGAATCAGTATTGGAAGTCTTGGA 879
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68322941745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5