BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494871

Length=650
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48170.1 | Symbols: SLY2 | F-box family protein | chr5:19532...   745    0.0  


> AT5G48170.1 | Symbols: SLY2 | F-box family protein | chr5:19532537-19533265 
REVERSE LENGTH=729
Length=729

 Score =  745 bits (403),  Expect = 0.0
 Identities = 467/498 (94%), Gaps = 3/498 (1%)
 Strand=Plus/Plus

Query  3    TTGTTTAACCATGTCG--GGA-AAAAGAATAAGCATGGTCGAGAAAAGTAACAACAAGAG  59
            ||| || |||||||||  ||| ||| |  || ||||||||||||||||||||||||||||
Sbjct  54   TTGGTTCACCATGTCGTCGGAGAAACGTGTAGGCATGGTCGAGAAAAGTAACAACAAGAG  113

Query  60   ACAAAGAGTGAACCAAGTTCCAAAGTTCAGTATCAACGACCACCACGACGTTCTTGTAGA  119
            |||||||||||||||||||||   |||||| |||||||||||||||||||||||||| ||
Sbjct  114  ACAAAGAGTGAACCAAGTTCCCGTGTTCAGCATCAACGACCACCACGACGTTCTTGTTGA  173

Query  120  AATCCTCCGGCGACTAGACGGTCCATCTCTTTGCTCAGCCGCATGTGTGTGCCGTCTTTG  179
            |||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||
Sbjct  174  AATCCTCCGGCGACTAGACGGTTCATCTCTCTGTTCAGCTGCATGTGTGTGCCGTCTTTG  233

Query  180  GTCGGCCGTGGCTCGTAACGACTCTATATGGGAAGAGCTCTGTTTCCGACAAGTTTCACC  239
            ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  234  GTCAGCCGTGGCTCGAAACGACTCTATATGGGAAGAGCTCTGTTTCCGACAAGTGTCACC  293

Query  240  ACGACCTTCTTTGTCTCTTCGTTCCGTTGTGTCGGCTCTTGGTGGCTACCGATGTCTCTA  299
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  294  ACGACCATCTTTGTCTCTTCGTTCCGTTGTGTCGGCTCTTGGTGGCTACCGATGTCTCTA  353

Query  300  CTTCCTCTGTATCCGTCCCGTCCTCGCACGACTTCCTAAGCTTCGTTGGACACGAGACCA  359
            |||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct  354  CTTCCTCTGTATCCGTCCCGTCCTGGCACGACTCCCTAAGCTTCTTTGGACACGAGACCA  413

Query  360  GCTTCAGCTCTCTTTGTCACTTTACTGTGTTCATTACTACGAGCGCCTCTACGTCGGCGC  419
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  414  GCTTCAGCTCTCTCTGTCACTTTACTGTGTCCATTACTACGAGCGCCTCTACGTCGGCGC  473

Query  420  GTGGCTTGGAGACGCGCCACCTTCGTCGCTTATGTTTCTTCGGAAGCCCGTTAATGTTGT  479
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  474  GTGGCTTGGAGACGCGCCACCTTCGTCGCTTATATTTCTTCGGAAGCCCGTTAACGTTGT  533

Query  480  CTGAACTGGAACCAGAAC  497
            |||||| |||||| ||||
Sbjct  534  CTGAACCGGAACCGGAAC  551


 Score =  202 bits (109),  Expect = 4e-51
 Identities = 151/170 (89%), Gaps = 8/170 (5%)
 Strand=Plus/Plus

Query  482  GAACTGGAACCAGAACGGCCCAT-TTTTTGTTTCTCGACGATCAATAAATTATTAGTTCC  540
            |||| | |||| ||||||||| | |||||||||||||||||||||||||||||||||   
Sbjct  566  GAACCGTAACCGGAACGGCCC-TCTTTTTGTTTCTCGACGATCAATAAATTATTAGT---  621

Query  541  CAAGATTTGTATTCTTTTATCAAATTAtttttttATTCCGACTTTTACGGTTACGAAATT  600
             ||  || |||||||||| | |||||| ||||||||||||||||||| ||||||||||||
Sbjct  622  -AATCTT-GTATTCTTTT-TAAAATTAATTTTTTATTCCGACTTTTATGGTTACGAAATT  678

Query  601  TCGATTTCTTCATTTCATTACAAGATTTTATTAATAAACGTGATCTTTTT  650
            |||||||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct  679  TCGATTTCTTCATTTCATTACAAGGTTTCATTAATAAACGTGATTTTTTT  728



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31396341875


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5