BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494876
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48230.2 | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolas... 2364 0.0
AT5G48220.1 | Symbols: | Aldolase-type TIM barrel family prote... 113 5e-24
> AT5G48230.2 | Symbols: EMB1276, ACAT2 | acetoacetyl-CoA thiolase
2 | chr5:19552142-19555529 REVERSE LENGTH=1866
Length=1866
Score = 2364 bits (1280), Expect = 0.0
Identities = 1472/1559 (94%), Gaps = 35/1559 (2%)
Strand=Plus/Plus
Query 157 ATTCGTCGCTCTCTTCTGGAATTGAAGTGTCAAGATTAGTAATGGCCCATACATCAGAAT 216
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 276 ATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGATTAGCAATGGCCCATACATCAGAAT 335
Query 217 CTGTGAAGCCTAGAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTC 276
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 CTGTGAATCCTAGAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTC 395
Query 277 TTGGATCTCTTTCGTCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGCTGCTT 336
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 TCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGCTGCTT 455
Query 337 TGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTTTTTGGCAATGTTCTTA 396
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 456 TGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCTTTGGCAATGTTCTTA 515
Query 397 GTGCTAATTTGGGTCAAGCTCCTGCTCGTCAGGCTGCTTTAGGTGCAGGAATCCCTAACG 456
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 516 GTGCTAATTTGGGTCAAGCTCCTGCTCGTCAAGCTGCTTTAGGTGCAGGAATCCCTAACT 575
Query 457 CTGTTATCTGTACTACAGTTAACAAAGTTTGTGCATCAGGCATGAAAGCGGTAATGATTG 516
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 576 CTGTTATCTGTACTACAGTTAACAAGGTTTGTGCATCAGGCATGAAAGCGGTAATGATTG 635
Query 517 CTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 CTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCA 695
Query 577 TGTCTAATACACCTAAATATTTAGCAGAAGCAAGGAAAGGATCTCGATTTGGTCATGATT 636
||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 696 TGTCTAATACACCAAAATATTTGGCAGAAGCAAGGAAGGGATCTCGTTTTGGTCATGATT 755
Query 637 CTTTAGTAGATGGAATGCTT-AAGGATGGACTATGGGATGTCTATAATGACTGTGGGATG 695
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 756 CTTTAGTAGATGGAATG-TTGAAGGATGGACTATGGGATGTCTATAACGACTGTGGGATG 814
Query 696 GGAAGTTGTGCAGAATTATGCGCTGAGAAGTTTGAGATTACAAGAGAGCAGCAAGATGAC 755
||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 815 GGAAGCTGTGCAGAATTATGCGCTGAGAAGTTTCAGATTACAAGGGAGCAGCAAGATGAC 874
Query 756 TATGCAGTTCAGAGTTTTGAGCGTGGTATTGCTGCCCAGGAAGCTGGCGCCTTCACATGG 815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 TATGCAGTTCAGAGTTTTGAGCGTGGTATTGCTGCCCAGGAAGCTGGCGCCTTCACATGG 934
Query 816 GAAATCGTCCCGGTTGAAGTTTCTGGAGGAAGAGGTAGGCCATCAACCATTGTTGACAAG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GAAATCGTCCCGGTTGAAGTTTCTGGAGGAAGAGGTAGGCCATCAACCATTGTTGACAAG 994
Query 876 GACGAAGGTCTTGGGAAGTTTGATGCTGCCAAATTGAGGAAACTCCGTCCTAGTTTCAAA 935
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 995 GACGAAGGTCTTGGGAAGTTTGATGCTGCAAAATTGAGGAAACTCCGTCCTAGTTTCAAA 1054
Query 936 GAGAATGGAGGGACTGTTACAGCAGGAAATGCGTCTAGCATAAGTGATGGTGCAGCTGCC 995
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1055 GAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAGTGATGGTGCAGCTGCC 1114
Query 996 CTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCAAATATTAGCAAAAATT 1055
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1115 CTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATT 1174
Query 1056 AAAGGGTATGGTGACGCAGCTCAGGAACCAGAGTTTTTCACTACTGCTCCTGCTCTTGCT 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 AAAGGGTATGGTGACGCAGCTCAGGAACCAGAGTTTTTCACTACTGCTCCTGCTCTTGCT 1234
Query 1116 ATACCAAAAGCCATTGCACATGCTGGTTTGGAATTTTCTCAAGTTGATTACTACGAGATC 1175
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1235 ATACCAAAAGCCATTGCACATGCTGGTTTGGAATCTTCTCAAGTTGATTACTATGAGATC 1294
Query 1176 AATGAAGCATTTGCAGTTGTAGCACTTGCAAATCAAAAGCTATTAGGGATTTCTCCGGAG 1235
|||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |||
Sbjct 1295 AATGAAGCATTTGCAGTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCAGAG 1354
Query 1236 AAAGTGAACGTAAATGGAGGAGCTGTCTCCTTGGGACATCCTCTGGGCTGCAGTGGCGCC 1295
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1355 AAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGCTGCAGTGGCGCC 1414
Query 1296 CGTATTCTAATCACATTGCTTGGGATACTAAAGAAGAGAAACGGAAAGTACGGTGTGGGA 1355
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 CGTATTCTAATCACGTTGCTTGGGATACTAAAGAAGAGAAACGGAAAGTACGGTGTGGGA 1474
Query 1356 GGAGTGTGCAATGGAGGAGGAGGTGCTTCTGCTCTTGTTCTTGAACTCCTTTGATGCATT 1415
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1475 GGAGTGTGCAACGGAGGAGGAGGTGCTTCTGCTCTAGTTCTTGAGCTCCTTTGATGCATT 1534
Query 1416 ATGAATTCAGGTTGGTAAACTAAATAGATGGATCTATCTCTCTTCCAACTTCCAAGAGTC 1475
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1535 ATGAATCCAGGTTGGTAAACTAAATAGATGGATCTATCTCTCATCCAACTTCCATGAGTC 1594
Query 1476 AGTAATTGCAGTTCAAGTTTTATGTTAGTTGGGTCTCTCAATAAAGGAGTGATCGTTGAT 1535
||| |||||| || | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1595 AGTCATTGCACTTTACGTTTTATGTTAGTTGG-TCTCTCAATAAAGGAGTGATCGTTGAT 1653
Query 1536 GTT---AAGTCTATTTATTTATATGAACTCAGCTTCtttttttttttCTTTCTGGTGACA 1592
||| |||||||||||||||||||||||| |||||||||||| | ||| | |||||||
Sbjct 1654 GTTGTTAAGTCTATTTATTTATATGAACTCGGCTTCTTTTTTTCT--CTTACCGGTGACA 1711
Query 1593 GTCAGT-A--GA-T---G-A----T-----G-A-TT--T-ATT---C-TCATGTACTGAT 1626
|||||| | || | | | | | | || | ||| | ||||||||| ||
Sbjct 1712 GTCAGTTATTGAATCATGGACCGATTTACCGTAGTTAATGATTTATCCTCATGTACTCAT 1771
Query 1627 TGAAACGTCGACCAAGATTTGACATTTGATAGCTAAATTTTAAGTACACAATGTGCATG 1685
| |||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||
Sbjct 1772 TAAAACGTCGACCAAGATTTGACATTTGATGGATAAATTT-AAGTACACAATGTGTATG 1829
Score = 230 bits (124), Expect = 4e-59
Identities = 148/160 (93%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 1 TTTAGAAGGACAGATCACATAGCCGTCGTGTTGCTCTTCATCGTAGTTATCGTCGCTGAT 60
||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 87 TTTTGAAAGACAGATCATATAGCAGTCGTGTTGCTCTTCATCGTAGTTATCGTCGCTGAT 146
Query 61 TCACCAACGACAACAACATCACAAGAAAGCGTCCTCTTTTATAGGACCCTCTCTCTGTCT 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 147 TCACCAACAACAACAACATCACAAGAAAGCGTCCTCTTTTATAGGACCCTCTGTCCCTGT 206
Query 121 TTCTCTCTCCAGTTATATTGTAGAATTCGTTGTCATATTC 160
|||||||||||||| |||||||||||||| |||||| |||
Sbjct 207 TTCTCTCTCCAGTTTTATTGTAGAATTCGCTGTCATTTTC 246
> AT5G48220.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19549798-19552267 FORWARD LENGTH=1493
Length=1493
Score = 113 bits (61), Expect = 5e-24
Identities = 80/89 (90%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 1597 GTAGATGATGATTTATTCTCATGTACTGATTGAAACGTCGACCAAGATTTGACATTTGAT 1656
|||| | ||||||||| |||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1492 GTAGTTAATGATTTATCCTCATGTACTCATTAAAACGTCGACCAAGATTTGACATTTGAT 1433
Query 1657 AGCTAAATTTTAAGTACACAATGTGCATG 1685
| ||||||| |||||||||||||| |||
Sbjct 1432 GGATAAATTT-AAGTACACAATGTGTATG 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83282704155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5