BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494878
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48240.3 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1339 0.0
> AT5G48240.3 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF1665 (InterPro:IPR012459); Has 286 Blast hits to 283 proteins
in 145 species: Archae - 0; Bacteria - 2; Metazoa - 103;
Fungi - 97; Plants - 41; Viruses - 1; Other Eukaryotes -
42 (source: NCBI BLink). | chr5:19559243-19561275 FORWARD LENGTH=1251
Length=1251
Score = 1339 bits (725), Expect = 0.0
Identities = 805/841 (96%), Gaps = 15/841 (2%)
Strand=Plus/Plus
Query 1 TCGTCTCTTCTCTCCCAAACTCTCGCCGCCGTGAAAACCCAAATTTATCGACGAAACCAT 60
|||||||||||| ||||||||||||||||||||| |||||||| || |||||||| ||||
Sbjct 1 TCGTCTCTTCTCCCCCAAACTCTCGCCGCCGTGATAACCCAAAGTTCTCGACGAAGCCAT 60
Query 61 GTCTACCGGAGAAGAAGGTCACATGGCGATGGCAGATAGAGGCTCTAGAAAGAGAAGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTACCGGAGAAGAAGGTCACATGGCGATGGCAGATAGAGGCTCTAGAAAGAGAAGAGT 120
Query 121 CGGCGTAAAGAAAGGTACTAAAGCGGCGAGGAACAAAAAGTTAAAATCAAAACCGTCTTC 180
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 121 CGGCGTTAAGAAAGGTACTAAAGCGGCGAGGAACAAAAAGCAAAAATCAAAACCTTCTAC 180
Query 181 CTCCGATAGGTTTAAGGTTACAATGAAGAATCAAAAGCTATTTCAGAAGAGAGCACGAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCCGATAGGTTTAAGGTTACAATGAAGAATCAAAAGCTATTTCAGAAGAGAGCACGAGA 240
Query 241 TTACAATTCCGATGA--A-GAAGAAG-A-A-GACGAATCGAAGAAACAACCAGAAGTAAC 294
||||||||||||||| | ||||||| | | || ||||||||||||||||||||||||||
Sbjct 241 TTACAATTCCGATGACGATGAAGAAGAAGATGATGAATCGAAGAAACAACCAGAAGTAAC 300
Query 295 AATTCGTGAGAAGATCTTCTCTGATGCTAACATGGGACCAAATTACGAAGAAATTGAAGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 301 AATTCGTGAGAAGATCTTCTCTGATGCTAACATGGGACCAAATTACGAAGAGATTG--G- 357
Query 355 AGAAGATGGTGAAGATAATGATGAGAATTCAGATGGTGAAGATCATGGAGAGATTGAATC 414
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AG-A-A----GAAGATAATGATGAGAATTCAGATGGTGAAGATCATGGAGAGATTGAATC 411
Query 415 TGGAATCACTAAGTTTGCTACTGATGGATGTAATGCTTTTAAAATCGCTTTTAAAGCTAT 474
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 412 TGGAATCACTAAGTTTGCTACTGATGGATGTAATGCTTTCAAAATCGCTTTTAAAGCTAT 471
Query 475 TATGAAGAAGACTAAAGGAGATGATACATTGGGTCCAGTTTTATCAGCACATAAGCATCT 534
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 TATGAAGAAGACTAAAGGAGATGATACATTGGGCCCAGTTTTATCAGCACATAAGCATCT 531
Query 535 TATTGGAGAGAAGCTAGCTGAAGAGGAAGCTGAAAAGAAAGCTAAAGGTCAAGCTAGAAA 594
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 532 TATTGGAGAGAAGCTAGCTGAAGATGAAGCTGAAAAGAAAGCTAAAGGTCAAGCTAGAAA 591
Query 595 GGCTAAACATTTGATTGCTGAGAAAGGACATGTTAAACCTGGAAGTTATTTGGATTCTCA 654
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 592 GGCTAAACATTTGATTGCTGAGAAGGGACATGTTAAACCTGGAAGTTATTTGGATTCTCA 651
Query 655 TGAAAAGATTCTTATTGGTGTTGCTACTAAAGGAGTGGTCAAGCTTTTCAATGCTGTAAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 652 TGAAAAGATTCTTATTGGTGTTGCTACTAAAGGAGTGGTCAAGCTTTTCAATGCTGTCAA 711
Query 715 CAAGGCTCAACATGCTCAGAAGGGTTTGAATCCTTCTAGGTCTAAAGACGCTAAAGTGCT 774
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 712 CAAGGCTCAACATGCTCAGAAGGGTTTGAATCCTTCAAGGTCTAAAGACGCTAAAGTGCT 771
Query 775 GAAGAAGCGAAGAAAAGAAGCATTCTTCTCTGAGTTAGGGAAAACAAAAACAGACAACAA 834
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 772 GAAGAAGCGAAGAAAAGAAGCATTCTTGTCTGAGTTAGGGAAAACAAAAACAGACACCAA 831
Query 835 G 835
|
Sbjct 832 G 832
Score = 228 bits (123), Expect = 9e-59
Identities = 147/158 (93%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 836 GCTCAAAAATCCGAAGACGAAGCTCCTGCTTGGGCTCCTCTACGAGATAATTACATGTTA 895
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 974 GCTCACAAATCTGAAGACGAAGCTCCTGTTTGGGCTCCTCTACGAGATAATTACATGTTA 1033
Query 896 GCAAACCCAAAGCTGAAGGACTGGGACAA-AAACCAGGAAACAA-CGGAGGGAGATGATT 953
||||||||||| ||||||||||||||||| |||| ||||||||| || ||||||||||||
Sbjct 1034 GCAAACCCAAAACTGAAGGACTGGGACAAGAAAC-AGGAAACAAGCG-AGGGAGATGATT 1091
Query 954 TTGCCGCTATGTCAGGAGATGAAAGTTACGAAGACTGA 991
|||||| | ||||||||||||||||||| |||||||||
Sbjct 1092 TTGCCGGTTTGTCAGGAGATGAAAGTTATGAAGACTGA 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48526186002
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5