BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494881
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48290.1 | Symbols: | Heavy metal transport/detoxification ... 660 0.0
> AT5G48290.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:19568917-19569799 FORWARD LENGTH=750
Length=750
Score = 660 bits (357), Expect = 0.0
Identities = 444/485 (92%), Gaps = 9/485 (2%)
Strand=Plus/Plus
Query 2 AGAAGTCTAAGCCAAAACATTCAAAGCGATTGCTCAAGCAAAACAAGATGATGCAGCAAA 61
|||| |||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||
Sbjct 14 AGAAATCTAAGCCAAAACATTCAAAGCGATTTCTCAAGCAAAACTAGAAGATGAAGCAAA 73
Query 62 AGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAG 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 74 AGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAG 133
Query 122 CAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCATAGGAACCAGATAG 181
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 134 CAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCACAGGAACCAGATAG 193
Query 182 AGGTTACCGGTGTTGAAGTTGATATGATCCCTCTCATCCAAAAACTCAGAAAGAAGGTAG 241
|||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 194 AGGTAACCGGCGTTGAAGTTGATATGATCCCTCTTATCCAAATACTCAGAAAGAAGGTAG 253
Query 242 CATTTGCAGAGCTTGTAAGCGTGACCAAAGTCGAACCTCCAAAGAAAGAAGACGAGAAGA 301
| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 254 CGTTCGCAGAGCTTGTGAGCGTGACCAAAGTTGAACCACCAAAGAAAGAAGACGAGAAGA 313
Query 302 AGGGAGGGGACGGAAAAGGTGCAGGGGGAAAAGGTGGTGACCAAAAAGGTGGCGATAAGA 361
| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 314 AAGGAGGGGACGGAAAGGGTGCAGAGGGAAAAGGCGGTGACCAAAAAGGTGGCGATAAGA 373
Query 362 AAGGGCCAGAAGATAAGAAACCTCCGGAGCCAAAACCGGTGCC-T-TCCTCCTTT-CC-C 417
|||||||||| || ||| ||||||||||||||||||| ||||| | | ||| | || |
Sbjct 374 AAGGGCCAGATGACAAGGAACCTCCGGAGCCAAAACCTGTGCCGTGTTATCCATGGCCTC 433
Query 418 --CAGGGATACGGTGTGCCTTTCTCCTTTCC-C--CAGGGAGACGGTGTGCCTTCCGCCT 472
|||||||||||||| |||| ||||||||| | || ||| |||||||||||||| |||
Sbjct 434 TGCAGGGATACGGTGTACCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCT 493
Query 473 TTCCC 477
|||||
Sbjct 494 TTCCC 498
Score = 257 bits (139), Expect = 8e-68
Identities = 174/190 (92%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 403 CCTTCCTCCTTTCC-C--CAGGGATACGGTGTGCCTTTCTCCTTTCCCCAGGGAGACGGT 459
|||||||||||||| | || |||||||||||||||| | ||||||||||||||||||||
Sbjct 451 CCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCTTTCCCCAGGGAGACGGT 510
Query 460 GTGCCTTCCGCCTTTCCCTACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAA 519
|| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GTACCTTCCTCGTTTCCATACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAA 570
Query 520 CCCGTTTATAATCATGAACCCAATTGCACAATCATGTGAAAC-AGGTTTTACAGAGGAAG 578
|||||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 571 CCCGTTTACAATCACGAACCCAATTGCAAAATCATGTGAAATGAG-TTTTACAGAGGAAG 629
Query 579 ATTGATAGAG 588
||||||||||
Sbjct 630 ATTGATAGAG 639
Score = 71.3 bits (38), Expect = 1e-11
Identities = 68/81 (84%), Gaps = 8/81 (10%)
Strand=Plus/Plus
Query 589 TTGTAAAGAACTAAAGAATCAATGTGTTTACTA--TA-T--T-T-AGT-CAGCTCTGAGG 640
|||||||||||||||||| || | ||||||||| || | | | | | ||||||||||
Sbjct 670 TTGTAAAGAACTAAAGAAGCACTATGTTTACTATTTAGTCATATGAATAAAGCTCTGAGG 729
Query 641 CCACCAAATCAATTTACTGCT 661
|||||||||||||||||||||
Sbjct 730 CCACCAAATCAATTTACTGCT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5