BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494881 Length=661 Score E Sequences producing significant alignments: (Bits) Value AT5G48290.1 | Symbols: | Heavy metal transport/detoxification ... 660 0.0 > AT5G48290.1 | Symbols: | Heavy metal transport/detoxification superfamily protein | chr5:19568917-19569799 FORWARD LENGTH=750 Length=750 Score = 660 bits (357), Expect = 0.0 Identities = 444/485 (92%), Gaps = 9/485 (2%) Strand=Plus/Plus Query 2 AGAAGTCTAAGCCAAAACATTCAAAGCGATTGCTCAAGCAAAACAAGATGATGCAGCAAA 61 |||| |||||||||||||||||||||||||| |||||||||||| ||| |||| |||||| Sbjct 14 AGAAATCTAAGCCAAAACATTCAAAGCGATTTCTCAAGCAAAACTAGAAGATGAAGCAAA 73 Query 62 AGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAG 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 74 AGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAG 133 Query 122 CAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCATAGGAACCAGATAG 181 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 134 CAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCACAGGAACCAGATAG 193 Query 182 AGGTTACCGGTGTTGAAGTTGATATGATCCCTCTCATCCAAAAACTCAGAAAGAAGGTAG 241 |||| ||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 194 AGGTAACCGGCGTTGAAGTTGATATGATCCCTCTTATCCAAATACTCAGAAAGAAGGTAG 253 Query 242 CATTTGCAGAGCTTGTAAGCGTGACCAAAGTCGAACCTCCAAAGAAAGAAGACGAGAAGA 301 | || ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| Sbjct 254 CGTTCGCAGAGCTTGTGAGCGTGACCAAAGTTGAACCACCAAAGAAAGAAGACGAGAAGA 313 Query 302 AGGGAGGGGACGGAAAAGGTGCAGGGGGAAAAGGTGGTGACCAAAAAGGTGGCGATAAGA 361 | |||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 314 AAGGAGGGGACGGAAAGGGTGCAGAGGGAAAAGGCGGTGACCAAAAAGGTGGCGATAAGA 373 Query 362 AAGGGCCAGAAGATAAGAAACCTCCGGAGCCAAAACCGGTGCC-T-TCCTCCTTT-CC-C 417 |||||||||| || ||| ||||||||||||||||||| ||||| | | ||| | || | Sbjct 374 AAGGGCCAGATGACAAGGAACCTCCGGAGCCAAAACCTGTGCCGTGTTATCCATGGCCTC 433 Query 418 --CAGGGATACGGTGTGCCTTTCTCCTTTCC-C--CAGGGAGACGGTGTGCCTTCCGCCT 472 |||||||||||||| |||| ||||||||| | || ||| |||||||||||||| ||| Sbjct 434 TGCAGGGATACGGTGTACCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCT 493 Query 473 TTCCC 477 ||||| Sbjct 494 TTCCC 498 Score = 257 bits (139), Expect = 8e-68 Identities = 174/190 (92%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 403 CCTTCCTCCTTTCC-C--CAGGGATACGGTGTGCCTTTCTCCTTTCCCCAGGGAGACGGT 459 |||||||||||||| | || |||||||||||||||| | |||||||||||||||||||| Sbjct 451 CCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCTTTCCCCAGGGAGACGGT 510 Query 460 GTGCCTTCCGCCTTTCCCTACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAA 519 || |||||| | ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 511 GTACCTTCCTCGTTTCCATACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAA 570 Query 520 CCCGTTTATAATCATGAACCCAATTGCACAATCATGTGAAAC-AGGTTTTACAGAGGAAG 578 |||||||| ||||| ||||||||||||| |||||||||||| || |||||||||||||| Sbjct 571 CCCGTTTACAATCACGAACCCAATTGCAAAATCATGTGAAATGAG-TTTTACAGAGGAAG 629 Query 579 ATTGATAGAG 588 |||||||||| Sbjct 630 ATTGATAGAG 639 Score = 71.3 bits (38), Expect = 1e-11 Identities = 68/81 (84%), Gaps = 8/81 (10%) Strand=Plus/Plus Query 589 TTGTAAAGAACTAAAGAATCAATGTGTTTACTA--TA-T--T-T-AGT-CAGCTCTGAGG 640 |||||||||||||||||| || | ||||||||| || | | | | | |||||||||| Sbjct 670 TTGTAAAGAACTAAAGAAGCACTATGTTTACTATTTAGTCATATGAATAAAGCTCTGAGG 729 Query 641 CCACCAAATCAATTTACTGCT 661 ||||||||||||||||||||| Sbjct 730 CCACCAAATCAATTTACTGCT 750 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31948917492 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5