BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494882
Length=1787
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48300.1 | Symbols: ADG1, APS1 | ADP glucose pyrophosphoryla... 2512 0.0
> AT5G48300.1 | Symbols: ADG1, APS1 | ADP glucose pyrophosphorylase
1 | chr5:19570240-19572804 FORWARD LENGTH=1896
Length=1896
Score = 2512 bits (1360), Expect = 0.0
Identities = 1661/1800 (92%), Gaps = 46/1800 (3%)
Strand=Plus/Plus
Query 1 TTTTTCACTTTCCCACAATCACAAGACAACAACAAAACTCTCACTCCAAATTCTCTCAAT 60
|||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1 TTTTTCGCTTTTCCACAATCACAAGACAACCACAAAACTCTCACTCCAAA-ACTCTCAAT 59
Query 61 TTCT-CCTTTGATCCTTTGATCGTAGCGAAATTGATTCACAACAATGGCGTCTATGGCTG 119
|| | || | |||||||| | || | | | || |||||||||||| | |||
Sbjct 60 TT-TGCC--T--TCCTTTGA---T--CG--A---A-T-ACTACAATGGCGTCTGTATCTG 102
Query 120 CGATTGGATTTCTAAAGGTACCTCCTGCTTCGAGTTTCGATTCCACCGGCAAAGCCACGG 179
| |||||| |||| ||||||||||||||||||| || | |||||||||| ||||||||||
Sbjct 103 CAATTGGAGTTCTCAAGGTACCTCCTGCTTCGACTTCCAATTCCACCGGAAAAGCCACGG 162
Query 180 AGGTTGTTCCGACGAGAACTCTTTCTTTCTCCTCCTCTGTAACTTCATCCGACGAGAAGA 239
||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 163 AGGCGGTTCCCACGAGGACTCTTTCTTTCTCCTCCTCTGTTACTTCATCCGACGACAAG- 221
Query 240 AGGTTTCACTCAAATCCACCGTCTCCCGTCGTCT-TAAATCTGTTGTTCGCGGCCGAGAT 298
| ||||||||||||||||||||||||||| | | |||||||||||||||| | || ||
Sbjct 222 A--TTTCACTCAAATCCACCGTCTCCCGTC-TTTGTAAATCTGTTGTTCGCAG--GA-AT 275
Query 299 ---ATGATCGTCTCTCCTAAAGCCGTCTCCGATTCTCAAAACTCACAAACTTGTCTCGAT 355
|| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 276 CCGATCATCGTCTCTCCCAAAGCCGTCTCAGATTCTCAAAACTCTCAAACTTGTCTCGAT 335
Query 356 CCTGATGCGAGCAGTAGTGTGTTGGGGATAATCTTAGGAGGTGGAGCTGGAACTCGTCTT 415
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 336 CCTGATGCTAGCAGCAGTGTTTTGGGGATAATCTTAGGAGGTGGAGCTGGAACTCGTCTT 395
Query 416 TATCCTCTTACGAAGAAGAGAGCGAAACCAGCTGTTCCTCTTGGTGCTAACTATAGGCTC 475
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 396 TATCCACTTACGAAGAAGAGAGCGAAACCAGCTGTGCCTCTTGGTGCTAACTATAGGCTT 455
Query 476 ATTGATATTCCTGTGAGCAACTGTTTGAATAGCAACATATCCAAAATCTATGTTCTTACT 535
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 456 ATTGATATTCCTGTGAGCAACTGTTTGAATAGCAACATATCCAAGATCTATGTTCTTACT 515
Query 536 CAGTTCAATTCCGCGTCTCTGAATCGTCATCTTTCACGAGCTTATGCGAGTAACATGGGA 595
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 516 CAGTTCAATTCCGCGTCTTTGAATCGTCATCTTTCACGAGCTTATGCTAGTAACATGGGA 575
Query 596 GGTTATAAGAATGAAGGTTTTGTTGAAGTTCTTGCTGCTCAACAAAGTCCTGAAAATCCC 655
||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 576 GGTTATAAGAATGAAGGATTCGTTGAAGTTCTCGCTGCTCAACAGAGTCCTGAAAACCCC 635
Query 656 AACTGGTTCCAGGGGACAGCTGATGCGGTGAGGCAATACTTGTGGTTGTTCGAGGAGCAT 715
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 636 AACTGGTTCCAGGGGACAGCTGATGCCGTCAGGCAATACTTGTGGTTGTTCGAGGAGCAT 695
Query 716 AATGTTTTGGAGTATCTGATTCTCGCTGGGGATCATTTGTATAGAATGGATTACGAGAAG 775
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 696 AATGTCTTGGAGTATCTCATTCTTGCTGGGGATCATTTGTATAGAATGGACTATGAGAAG 755
Query 776 TTTATTCAAGCACATAGAGAGACTGATGCTGATATCACAGTAGCTGCATTACCAATGGAT 835
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TTTATTCAAGCACATAGGGAGACTGATGCTGATATCACAGTAGCTGCATTACCAATGGAC 815
Query 836 GAGCAACGAGCCACTGCTTTTGGGCTGATGAAGATCGATGAAGAAGGACGTA-TAGTTGA 894
||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||
Sbjct 816 GAGCAACGAGCCACTGCTTTTGGGCTGATGAAGATTGATGAGGAAGGACGTATTA-TTGA 874
Query 895 ATTTGCCGAAAAACCAAAGGGGGAGCACTTAAAGGCCATGAAGGTTGACACAACAATTCT 954
|||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 875 ATTTGCTGAAAAACCAAAAGGGGAGCACCTAAAGGCCATGAAGGTTGACACAACAATTCT 934
Query 955 TGGTCTTGATGATAAGAGAGCCAAGGAGATGCCTTAT-ATTGCTAGTATGGGTATTTATG 1013
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 935 AGGTCTTGATGATCAGAGAGCCAAGGAGATGCCTT-TCATTGCTAGTATGGGTATTTATG 993
Query 1014 TTGTAAGCAGAGATGTAATGCTAGAATTACTACGGGA-CAAATTTCCTGGAGCTAATGAC 1072
||||||||||||||||||||||||| ||||||||| | | | ||||||||||||||||||
Sbjct 994 TTGTAAGCAGAGATGTAATGCTAGACTTACTACGGAATC-AGTTTCCTGGAGCTAATGAC 1052
Query 1073 TTTGGAAGCGAAGTCATTCCCGGTGCCACTTCCCTTGGACTGAGGGTGCAAACTTACCTA 1132
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1053 TTTGGAAGTGAAGTCATTCCCGGTGCCACTTCCCTTGGACTGAGGGTGCAAGCTTACCTA 1112
Query 1133 TATGATGGCTACTGGGAAGACATTGGTACTATAGAGGC-TTTCTATAATGCAAATCTTGG 1191
|||||||| ||||||||||||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 1113 TATGATGGTTACTGGGAAGACATTGGTACTATAGAGGCATTT-TATAACGCTAATCTTGG 1171
Query 1192 AATCACCAAGAAACCAGTTCCTGATTTTAGTTTCTATGATCGTTCCGCTCCTATCTACAC 1251
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1172 AATCACCAAGAAACCAGTTCCTGATTTTAGTTTCTATGACCGTTCTGCTCCGATCTACAC 1231
Query 1252 ACAGCCACGTTATTTACCACCGTCTAAGATGCTTGATGCTGATGTCACGGACAGTGTCAT 1311
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1232 ACAGCCGCGTTATTTACCACCGTCTAAGATGCTTGATGCTGATGTTACTGACAGTGTCAT 1291
Query 1312 CGGAGAGGGATGTGTTATCAAGAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTC 1371
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CGGAGAGGGCTGTGTTATCAAGAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTC 1351
Query 1372 CTGCATATCAGAAGGTGCTATTATTGAAGATTCGCTATTAATGGGCGCTGACTATTACGA 1431
|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 1352 CTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGA 1411
Query 1432 GACTGCTTCGGAAAAGAGCCTCCTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAA 1491
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1412 GACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAA 1471
Query 1492 AAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATTGGTGACAATGTCAA 1551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1472 AAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAA 1531
Query 1552 GATCATAAACAGTGACAATGTGCAAGAGGCAGCGAGAGAGACTGATGGATATTTCATAAA 1611
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 GATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATATTTCATAAA 1591
Query 1612 GAGCGGAATTGTAACCGTTATCAAAGACGCCTTAATCCCAACCGGCACTCTCATCTAAAC 1671
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1592 GAGCGGAATTGTAACGGTTATCAAAGACGCCTTAATCCCAACCGGCACTGTCATCTGAAG 1651
Query 1672 TACACAAGTAATGCTACTCTGTTTATTTCT-CTTTCTTCCTAATTCCCTATCAATAAGCt 1730
|||||| ||||||| || ||||||||||| | | ||| ||||| ||||||||||||| |
Sbjct 1652 TACACA--TAATGCTCCTTTGTTTATTTCTTCAT-CTTTCTAATGCCCTATCAATAAG-T 1707
Query 1731 ttt-tttATGGCTTTT-ATGCCCCAATAAATCTACTACTGGTTGTATTGTTGCTTA-GAA 1787
||| |||||||||||| | |||||||||||||||||||| |||||| || |||||| |||
Sbjct 1708 TTTCTTTATGGCTTTTTAAGCCCCAATAAATCTACTACTAGTTGTAATGCTGCTTACGAA 1767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88403159745
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5