BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494884
Length=1528
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48330.1 | Symbols: | Regulator of chromosome condensation ... 2237 0.0
> AT5G48330.1 | Symbols: | Regulator of chromosome condensation
(RCC1) family protein | chr5:19585936-19587841 FORWARD LENGTH=1533
Length=1533
Score = 2237 bits (1211), Expect = 0.0
Identities = 1428/1533 (93%), Gaps = 14/1533 (1%)
Strand=Plus/Plus
Query 1 TCAAGATGCCGGAATCACTTACATAATGAAAACTTTTCTTTCTCCGGCGATATGCTTCGA 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3 TCAAGATGCCGGAATCATTTACACAATGAAAACTTTTCTTTCTCCGGCGATATGCTTCGA 62
Query 61 TTATGGTCGATAGCGAAAGTACAGGTCAGGAATGTTTCTACCTCCGAATCCCTCTTCTGC 120
| ||||||||| |||||| |||| |||| || |||| | | ||||| || | ||| |||
Sbjct 63 TCATGGTCGATCGCGAAACTACAAATCAGTAAAGTTTATTCATCCGATTCTCGCTTTTGC 122
Query 121 AGACACGTTCTTTTCAATGGATTTGTCAGACGACAATTCACGAGCACTAGGGGCGAAAGA 180
| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 123 ACACACGTTCTCTTCAATGGAGTTGTCAGACGACAATTCACGAGCACTAGCGGCGAAAGA 182
Query 181 AGAACAGTGATGAGCTTCGGTGACGGAAGCCATGGAGCTCTTGGTCTCTCATCATCGTCG 240
|||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||
Sbjct 183 AGAACAGTGATGAGCTTCGGTGACGGAAACCTTGGCGCTCTTGGTCTTTCATCATCGTCG 242
Query 241 ATTCCAGGCATGGGAATGGATGCTTACGAACCTACCGTTGTTTCTAATTTGCCTTCCGAT 300
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 243 ATTCCAGGCATGGGAATGGACGCTTACGAACCCACCGTAGTTTCTAATTTGCCTTCCGAT 302
Query 301 ATCTCTTTCATATCCGCCGGACACTATCATTCTCTTGCCGTTACATTTGGCGGTGAGATT 360
||||||| ||||||||||||||| || ||||||||||||||||||| | |||||||||||
Sbjct 303 ATCTCTTCCATATCCGCCGGACATTACCATTCTCTTGCCGTTACATCTAGCGGTGAGATT 362
Query 361 TGGGCTTGGGGTCGCAACAATGAAGGCCAGCTCGGTCGAATCACT-GTTGATTCTGGTAG 419
|||||||||||||||||| | ||||||||||||||||||||| | |||||||| ||||
Sbjct 363 TGGGCTTGGGGTCGCAACGACGAAGGCCAGCTCGGTCGAATC-GTAATTGATTCTAGTAG 421
Query 420 AGATTCAAGGAGTGAACCGAAGAGAGTGGAAGGTCTAGATAATGTGAATGTCCGGGCTGC 479
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 422 AGATTCAAGGAGTGAACCTAAGAGAGTGGAAGGTCTAGAGAATGTGAATGTCCAGGCAGC 481
Query 480 GTTTGCGTCTGGAGTTGTTTCAGCGGCTATTGGAGATGATGGCTCTTTGTGGGTTTGGGG 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 482 GTTTGCGTCTGGAGTTGTTTCAGCTGCTATTGGAGATGATGGCTCTTTGTGGGTTTGGGG 541
Query 540 AAGATCTAAAAGAGGGCAGCTTGGGCTTGGAAAAGGTATCATAGAAGCTCGAGTTCCTTC 599
||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 542 AAGATCTAAAAGAGGACAGCTTGGTCTTGGAAATGGTATCATTGAAGCTCGAGTTCCTTC 601
Query 600 GAGAGTTGAAACTTTAGCTGCAGAGCACGTCGTGAAGGTATCATTAGGTTGGGGGCACGC 659
||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 602 GAGAGTTGAAAATTTAGCTGCAGAGCACGTTGTTAAGGTATCATTAGGTTGGGGGCACGC 661
Query 660 ACTTGCGCTTACTGTGGATGGTAAAGTTTTTGGATGGGGTTATGTAGCTGATGGAAGAGT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ACTTGCGCTTACTGTGGATGGTAAAGTTTTTGGATGGGGTTATGTAGCTGATGGAAGAGT 721
Query 720 AGGCAATGTTGGACTTCCACTTGAAGCATCTCTGTTAGATAT-AATTACAGATGGGTCGA 778
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 722 AGGCAATGTTGGACTTCCACTTGAAGCATCTCTGCTAGAT-TCAATTACAGATGGGTCGA 780
Query 779 TGAAAGATCAACACGCTGC-GG--ATTTGAATCTTGAAGCAGCGGAAAAGAAGGTTGTGG 835
|||||| ||| || ||||| || ||||||||||||| ||||| ||||||||||||||||
Sbjct 781 TGAAAGGTCACCATGCTGCTGGTGATTTGAATCTTGAGGCAGCTGAAAAGAAGGTTGTGG 840
Query 836 AAGCAATGAGCAAGGAGAACGACATGCCAATAGCGTGGGAACCTCGTCTGGTGGAAGAAA 895
|||||||||| || |||||||| |||||||| || ||||||||| |||||||||||||||
Sbjct 841 AAGCAATGAGTAAAGAGAACGATATGCCAATTGCTTGGGAACCTTGTCTGGTGGAAGAAA 900
Query 896 CACGTAACGTGAAGGTAGCAGATATTGCGTGCGGTTCCGATCACTCCTTGATCCTTTGTC 955
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGTGTAACGAGAAGGTAGCAGATATTGCGTGCGGTTCCGATCACTCCTTGATCCTTTGTC 960
Query 956 ATGATGGCACACTTTTGAGCTCTGGGAGCAACATCTATGGTCAGTTGGGTCGGTCTAAAC 1015
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATGATGGCACACTTTTGAGCGCTGGGAGCAACATCTATGGTCAGTTGGGTCGGTCTAAAC 1020
Query 1016 AAGACCTCGGAATGACACCTGTTGACATAACTGAATCCCCGATCTCTATTGCAGCTGGTC 1075
|||| || ||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1021 AAGATCTAGGAATGAAACCTGTTGATATAACTGAATCTCCGATCTCTATAGCAGCTGGTC 1080
Query 1076 TTGGTCATTCACTAGCTATCTGCAACAGAGATGAAAGAAAGATTCTCTCATGGGGTTGGA 1135
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 1081 TTGGTCATTCACTAGCTATCTGCAACAGGGGTGAAAGAAATATTCTCTCATGGGGTTGGA 1140
Query 1136 ACCGTAGCCGGCAGCTTGGTAGGGGAAAACCGGAACACCTGCCAAGAGAAGTAGAAGGTT 1195
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1141 ACCGAAGCCGGCAGCTTGGTAGGGGAAAACCGGAAAACCTGCCAAGAGAAGTAGAAGGTT 1200
Query 1196 TTGATGGGGAAAATCCAGCTTCAGTATCAGCAGGACGTGTGCATTCCTTGTGTGTAACAG 1255
| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1201 TCGATGGGGAAAGTCCAGCTTCAGTATCAGCAGGGCGTGTGCATTCCTTGTGTGTAACAG 1260
Query 1256 AGAAAGGAGAAGCTTGGGTTTGGGGTTGTGGGAAGAATGGTAGGCTTGGTTTAGGAAGCT 1315
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1261 AGAAAGGAGAAGCTTGGGTTTGGGGTTGTGGGAAGAATGGTAGGCTCGGTTTAGGAAGCT 1320
Query 1316 CGAGCGATGAGCCTGAACCAATGTTGTTAGAGGACATAGAGGGTTGTGTTCTTCAAACAG 1375
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1321 CGAGCGATGAGCCTGAACCGATGTTGTTAGAGGATGTAGAGGGTTGTGTTCTTCAAGCAG 1380
Query 1376 TCGCTGGCTTTGATCACAGCCTGATCTTAGTGGCTGAATAGCCCCACCAAATCAAATGTC 1435
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 1381 TCGCTGGCTTTGATCACAGCCTGATCTTAGTGGCTGAATAGCCCCACCCAAT-A--T--C 1435
Query 1436 TAGGAAACATTGATCTTGAATAATT-ATATCATGTATCTACGTGCGATCAGTTGCTTTTT 1494
||| |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||
Sbjct 1436 TAGTAAACATTGATCTTGAA-AATTTATTTCATGTATTTACGTGCGATCAGTTGCTTTTT 1494
Query 1495 GGGTGAATTGGTGAAATAAAATTAGAAAGATCA 1527
||||| |||||||||||||||||||||||||
Sbjct 1495 AAGTGAACTGGTGAAATAAAATTAGAAAGATCA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75401218590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5