BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494886
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27030.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1286 0.0
> AT1G27030.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G27020.1);
Has 504 Blast hits to 502 proteins in 169 species: Archae
- 0; Bacteria - 299; Metazoa - 0; Fungi - 0; Plants - 67; Viruses
- 0; Other Eukaryotes - 138 (source: NCBI BLink). | chr1:9381803-9383984
FORWARD LENGTH=1244
Length=1244
Score = 1286 bits (696), Expect = 0.0
Identities = 878/961 (91%), Gaps = 31/961 (3%)
Strand=Plus/Plus
Query 120 TTATGGATATAAAATTGGAGGTGGACTTGATTTTCCAAAGAAGAAACTACGAGTTCTTTG 179
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 276 TTATGGATATAAAATTGGTGGTGGACTTGATTTTCCCAAGAAGAAACTACGAGTTCTTTG 335
Query 180 GTTTTCTCCTCCCGATGTCCACGTCCCTAAAGATGGTCACGGTCTAGGCAATGACCCTTT 239
||||||||| || ||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct 336 GTTTTCTCCACCTGATGTTCACGTTCCTAATGATGGTCACGGTCTAGGCAACGGCCCTTT 395
Query 240 GCCGCGAATTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGAT 299
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 GCCGCGACTTGTTATAGCTGAGGTTCTTGTGGACGAACTAAGCCCTGAATCACAGGGGAT 455
Query 300 AATAAGGAAGTATTTGAAACCAGAAGGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGGA 359
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 456 AATAAGGAAGTATTTGAAACAAGAAGGTGGCAAGCAAGCGGTTCTTTCTAGTACTTTGGG 515
Query 360 GTCTTTAATATGGGAGAAGCCTACATGGACCGAG--CAA-C---TTGCCAAAGAAAGCGA 413
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct 516 GTCTTTAATATGGGAGAAGCCTACATGGACCGACTTCAAGCAGCTTGCCAAAGAAAGCGA 575
Query 414 AATTGCGGCATGGACGCTTATCCACGGCTACACACTGAATCATCTTGCTTTTGCGGTTCA 473
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 576 ATTTGCGGCATGGACGCTTATCCACGGCTACACAATGAATCATCTTGCTTTTGCGGTTCA 635
Query 474 TCGATTCAAACATCGTTTCAGTGATATCAAATTCGTCAAACAACATCTTGAAGAAAAGGG 533
|||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||
Sbjct 636 TCGATTCAAACATCGTTTCAGTGACATCAAATTCGTCAAACAGCGTCTTGAGGAAAAGGG 695
Query 534 ATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTGCTTCA 593
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 696 ATTCAAACTCAACAGTGACGGAGAAATCCTCAAAGTGAGTCAAGATGGTCTACTATTTCA 755
Query 594 AGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGAAGTAACTGAAACAAT 653
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 756 AGTTTCATCGATCTCGGAAAGGCTTCCGGTAACATTTGCAGATGGAGTAACTGAAACAAT 815
Query 654 CCCAGCTTCGTACATTGAGTTCACTCAACGTCAAGTTCTTCCAGAGTTCAAAGATGTGCC 713
||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 816 CCCAGCTTCATACATTGAATTCACTCAGCGTCAAGTTCTTCCAGAGTTCAAAGATGTGCC 875
Query 714 GCATGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTCGATAACGCCAGCAA 773
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 876 GCTTGATGAGATCAAAGAATTTCATAGACGTGAAGCTTTTGAACTCGATAACGCCAACCA 935
Query 774 CATAATGGAAAGCACCCGTTTCACAACCAAATTCTAGAGCCAGACTTGTCTTGCTCGACT 833
| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 936 CGTAATGGAAAGCACCCGTTTCACAACTAAATTCTAGAACCAGACTTGTCTTGCTCGACT 995
Query 834 AA--ATATGTCAAATTTGTGTCA-CTATTTATGTGTTTGTGTGCAATCTTATTtata-ta 889
| ||||| |||||||||| || |||| |||||| |||||| | || | | | |
Sbjct 996 TAGTATATGCCAAATTTGTG-CAACTATATATGTGAGTGTGTG---T-TTGTGTGCAATC 1050
Query 890 tat--atatatatGCGTGAATCGTGATGTGTCTTTGCGATATCTTTATGTTGTTATGTTA 947
| | |||||||||| | | ||| ||| | || ||||||||||||||||||||| |||
Sbjct 1051 TTTCCATATATATGC---A-T-GTG-TGTAT-TT-GCGATATCTTTATGTTGTTATTTTA 1102
Query 948 CTGTGAAGTGACAATTACTTAAAACATTTATATTATCTCTCATGATGGTTATTGTTGATA 1007
|||||||| |||||| | || ||| || ||||||||||||||||| |||||||||
Sbjct 1103 CTGTGAAGGGACAATG--T-AAG-CAT--ATGTTATCTCTCATGATGGTAATTGTTGATT 1156
Query 1008 AGAGTGACCAACTTGTCAAATGGATCACATTATTGACGAATCATGGGAAATAAAATGTAT 1067
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1157 AGAGTGACCAACTTGTAAAATGGATCACATGATTGACGAATCATGGGAAATAAAATGTAT 1216
Query 1068 T 1068
|
Sbjct 1217 T 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5