BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494887
Length=2556
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48360.1 | Symbols: | Actin-binding FH2 (formin homology 2)... 3742 0.0
> AT5G48360.1 | Symbols: | Actin-binding FH2 (formin homology
2) family protein | chr5:19595657-19598492 FORWARD LENGTH=2569
Length=2569
Score = 3742 bits (2026), Expect = 0.0
Identities = 2388/2554 (94%), Gaps = 60/2554 (2%)
Strand=Plus/Plus
Query 24 AGaaaaaaaTGCAGAACTTTTGGTTCACCATCTTCTTCTTCCTGCTAACATGCGCACCAC 83
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 52 AGAAAAAAATGCAGAACTTTTGGTTCGCCATCTTCTTCTTCCTGCTAACATGCGCACCAC 111
Query 84 CGTCTCTTTTATCCTACGCATCCGCCGTAACTCTCAGCCGTCGTCTCCTCTACGACTACG 143
|||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 112 CGTCTCCTTTATCCTACGCATCCACCGTAACTCTCAGCCGTCGTCTCCTCTATGACTATG 171
Query 144 AATCAcctcttcctcttcctctatctcccattagccctcctttcttccctcttgaatcct 203
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 172 AATCACCTCTTCCTCTTCCTCTATCCCCCATTAGCCCTCCTTTCTTCCCTCTTGAATCCT 231
Query 204 ctcctccttctcctcctccacctcttcctcctactcctccGACCACTTTCGCCGTCTTTC 263
| ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 232 CCCCTCCTTCTCCACCTCCTCCTCTTCCGCCTACTCCTCCGACAACTTTCGCCGTCTTTC 291
Query 264 CTACTTTTCCGGCTAACATCTCCGCCTTAGTCCTCCCTCGCTCCTCTAAACCACACCACA 323
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CAACTTTTCCGGCTAATATCTCCGCCTTAGTCCTCCCTCGCTCCTCTAAACCACACCACA 351
Query 324 CTTCACCTACACTTCTCCTCCCAGCTCTCTCCGCCGTCCTTGCCGTCGCTACAGTCATAG 383
||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||
Sbjct 352 CTTCACCTACACTTCTCCTCCCAGCTCTCTCCGCCGTTCTTGTCATTGCTACAGTCATAG 411
Query 384 GCTTGGCTTTGTTTCTCTACGGCCGCCACCAAGGGCAAAAC-CGTCATTTCAAGGACTCT 442
|||| || |||||||||||||||||||||| ||||| |||| |||||||| ||| |||||
Sbjct 412 GCTTAGCCTTGTTTCTCTACGGCCGCCACCGAGGGC-AAACTCGTCATTTAAAGAACTCT 470
Query 443 CCTT-CTCGTAGTAGCAACACAAGCAGCAGCTATGATGATGAACAGAGTCACATTACTAC 501
| || || |||||||||||| | |||||||||| ||||||||||||||| || || ||
Sbjct 471 CATTGTTC-TAGTAGCAACAC-A--AGCAGCTATGGTGATGAACAGAGTCATATCACCAC 526
Query 502 TAACTTCAATATGGCTGCTACTACTTCTCCTTCAGAAGTCTTCTACATCAATACAGAGGA 561
||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 527 TAACTTCAACATGGCTGCTACTACTTCTCCTTCAGAAGTTTTTTACCTCAATACAGAGGA 586
Query 562 ATCTGACCATATTCGAACCGGAGGAGGAACTTGTTTCTTGAAGCAAGACTCGCCGGAGAT 621
||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 587 ATCTGACCATATTAGAACC---GGAGGTACTTTTTTCTTGAAGCAAGACTCGCCGGAGAT 643
Query 622 ACGACCATTACCACCATTACCTCCTCGTAGCTTCCACCACAACAACTATGAAACAGAGGT 681
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 644 ACGACCATTACCACCATTACCTCCTCGTAGCTTCCACCATAACAACTATGAAACAGAGGT 703
Query 682 AAACgaagaagacgaagaagaagaagaagaTGTGTTCTTTTCACCAATGGCTTCTCTCCC 741
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 704 AAACGAAGAAGACGAAGAAGAAGAAGAAGATGTGTTCTTCTCACCAATGGCTTCTCTCCC 763
Query 742 TGGTTCTCA--GAACTCAAGCCCTTCTCATTCCTGCTCTTCCTCCTGCTCCGGTTGGGTT 799
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 764 TGG--CTCAGCGAACTCAAGCCCTTCTCATTCATGCTCTTCCTCCTGCTCCGGTTGGGTT 821
Query 800 TCTCCAGCTAGGTCATTCTCTATCACCATGTCTCCACCAAACCCTAGATACTCAGACGCC 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 TCTCCAGCTAGGTCATTCTCTATCACCATGTCTCCACCAAACCCTAGATACTCAGACGCC 881
Query 860 ACTAACCTTCAGTCTCCGTCACCGGAGAGACTAAGAGTAAGAAAGAACTATAACGGAAAT 919
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 882 ACTAACCTCCAGTCTCCGTCACCGGAGAGACTAAGAGTAAGGAAGAACTATAACGGAAAT 941
Query 920 GGGTCGTCGTCTTTAAGAATGTTTAGCTTCTGGAATCAAAATATGGGATTTGGGTTTCCT 979
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 GGGTCGTCTTCTCTAAGAATGTTTAGCTTCTGGAATCAAAATATGGGATTTGGGTTTCCT 1001
Query 980 CGTATCTCCTCTGCTTCTACTTCACCAGACAGAGGATTCATAAGAACACCACTTTCTTCT 1039
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1002 CGTATCTCCTCTGCTTCTACTTCACCAGACAGAGGATTCATAAGAACACCACTTTCGTCT 1061
Query 1040 CTCTACTCTTCAGTTTCTACTTCTCCAGATGGGTTATTCCGGAAGTTTCTCGATAGTTCG 1099
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1062 CTCTACTCTTCAGTTTCCACTTCTCCTGATGGGTTATTCCGGAAGTTTCTCGATAGTTCG 1121
Query 1100 CCGCCGATTTGGAATGACTTTAGTCGGAATGTGAAGTCTGTTTTGCTCTCTCATACTGCG 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1122 CCGCCGATTTGGAATGACTTTAGTCGGAATGTGAAGTCTGTTTTGCTCTCTCACACTGCG 1181
Query 1160 TCATCAAGAAGAGATTTTGTTATCAACATTGGTGAATCTTCTTCTCAACAGAGGAAAGTA 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1182 TCATCAAGAAGAGATTTTGTTATCAACATTGGTGAATCTTCTTCTCAACAGAGCAAAGT- 1240
Query 1220 GTAACAGTTCCTGCTCTTCCTCCTCCGACCAGACCACCTCCTCTTGTTCCACCGTCTCAA 1279
| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 -T--C----C-TGCTCTTCCTCCTCCGACCAGACCACCTCCTCTTGTTCCACCGTCTCAA 1292
Query 1280 CCTTTTATGGTTCAAAATGATGTAAAAAAGCTCTCTTTTTCCGACCAACCTCCCAAACAG 1339
|||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1293 CCTTTTGTGGTTCAAAATGATGTAAAAAAGCAATCTTTTTCAGACCAACCTCCCAAACAG 1352
Query 1340 CTGCCTTGGGATCGTCTTAGATCGAGCTCTT-TCAAATTGAGCAAAGAGATGGTAGAGAC 1398
|||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1353 CTGCATTGGGAACGTCTTAGATCGAGCTCTTCT-AAATTGAGCAAAGAGATGGTAGAGAC 1411
Query 1399 TATGTTCATTGCAAACTCGTCTAATCCAAGAGATCTTCCGATTCTTAGTCAAGAAAGCAA 1458
||||||||||||||||||||| |||||||||||||||||||||| | || | |||
Sbjct 1412 TATGTTCATTGCAAACTCGTCAAATCCAAGAGATCTTCCGATTC--A---AA-AT--CAA 1463
Query 1459 AGTTTTAGATCCAAGAAAGGCTCAGAATATTGCTACTCTGCTTCAACTACTTAACTTAAG 1518
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1464 -GTTTTAGATCCAAGAAAGGCACAGAATATTGCTACTCTGCTTCAACTACTTAACTTAAG 1522
Query 1519 CACTAAGGATGTTTGTCAAGCTCTTCTTGATGGTGACTGTGGTGTACTTGGAGCTGAACT 1578
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1523 CACTAAGGATGTTTGTCAAGCTCTTCTTGATGGTGACTGTGATGTACTTGGAGCTGAACT 1582
Query 1579 TCTTGAGTGTTTATCGAGATTGGCACCTAGTAAAGAAGAAGAGAGGAAGTTGAAGAGCTA 1638
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1583 TCTTGAGTGTTTATCAAGATTAGCACCTAGTAAAGAAGAAGAGAGGAAGTTGAAGAGCTT 1642
Query 1639 TAGTGATGATTCAGAGATTGGTCCAGCTGAGAGGTTTCTTAAGGAATTGCTTCATGTGCC 1698
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 TAGTGATGGTTCAGAGATTGGTCCAGCTGAGAGGTTTCTTAAGGAATTGCTTCATGTGCC 1702
Query 1699 TTTTGCGTTTAAACGGGTTGATGCATTGCTCTTTGTGGCTAATTTCCACTCCGAGATCAA 1758
||||| ||||||||| |||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1703 TTTTGTGTTTAAACGTGTTGATGCATTGCTTTTTGTGGCTAATTTCCATTCGGAGATCAA 1762
Query 1759 ACGTCTCAGAAAATCATTCAGTGTTGTTCAGACTGCTTGTGAAGAACTAAGGAATAGTAG 1818
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1763 ACGTCTCAGAAAATCATTCAGTGTTGTTCAGGTTGCTTGTGAAGAACTAAGAAATAGTAG 1822
Query 1819 AATGTTTTCGATACTTCT-GATAGCTATTCTGAAGACAGGAAACAAGATGAATGTTAGAA 1877
|||||||||||||||||| || |||||| |||||||||||||||| ||||| ||||||||
Sbjct 1823 AATGTTTTCGATACTTCTTGA-AGCTATACTGAAGACAGGAAACATGATGAGTGTTAGAA 1881
Query 1878 CAAACCGGTGCGGTGATGCTCATGC-TTCCAAACTCGACATGCTCCTCAAGCTCGTTGAG 1936
||||||| || || ||||| |||| ||| |||||||||| ||||||||||||||||||
Sbjct 1882 CAAACCGCTGTGGGGATGCGGATGCCTTC-AAACTCGACACGCTCCTCAAGCTCGTTGAT 1940
Query 1937 GTCAAGGGATTAGATGGAAGAAGCAGTCTCTTGCATTTCGTTGTTCAGGAAATGATTAAA 1996
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1941 GTCAAGGGATTAGATGGAAGAAGCAGTCTCTTGCATTTTGTTGTTCAGGAAATGATGAAA 2000
Query 1997 TCAGATGGCAGTATGAGAGCTTTAGAAGGCTTCAGAAACCTGAATTCAGAACTGAGCAAT 2056
||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2001 TCAGAAGGCAGTGTGAGAGCTTTAGAAGGCATCAGAAACCTGAATACAGAACTGAGCAAT 2060
Query 2057 GTCAAGAAATCGGCAGACATTGAGTATGGTGTACTAAGAAGCGATGTCTGGAAGC-TTTG 2115
|||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||
Sbjct 2061 GTCAAGAAATCGGCAGACATTGAGTATGGTGTACTAAGAAGCAATGTGTC-AAGGATTTG 2119
Query 2116 TCAAGGACTTAAGAACGTCGAAGAGCTTTTGCTACTTAGCGAGGAGAGTGG---A---G- 2168
|||||||| |||||| | |||| ||||||||||||||||||||||||||| | |
Sbjct 2120 CCAAGGACTCAAGAACATTGAAGCGCTTTTGCTACTTAGCGAGGAGAGTGGTTCATATGG 2179
Query 2169 A--TCAATGGCTGAAGTTCAGGGAGAGGATGACCCGATTCTTGAAAGCCGCTGCAGAGGA 2226
| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct 2180 AGATCAATGGCTGAAGTTCAAGGAGAGGATGACCCGGTTCTTGAAAACCGCTGCAGAGGA 2239
Query 2227 GATTGTGAAGATTAAAATACGAGAAAGTTCAACGCTCTCTGCATTGGAAGAGGTCACAGA 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2240 GATTGTGAAGATTAAAATACGAGAAAGTTCAACGCTCTCTGCATTGGAAGAGGTCACAGA 2299
Query 2287 GCAATTCCATGGAGATTCTTCCAAGGAAGGTAACACAATGAGAATCTTCATGATTGTGAG 2346
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2300 GCAGTTCCATGGAGATGCTTCCAAGGAAGGTCACACAATGAGAATCTTCATGATTGTGAG 2359
Query 2347 AGACTTCCTGTCTGTGCTAGACCAAGTGTGTAAGGAAATGGGAGACTGAT-CCCATTGTA 2405
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2360 AGACTTCCTGTCTGTTCTAGACCAAGTGTGTAAGGAAATGGGAGACTGATTCCCATTGTA 2419
Query 2406 AGATTTTTAATGTAATGATTAGGAACGTATCTCTAGTTTCAGTGTCT-GTAAC-AGGTAT 2463
||||||||||||||||||||||||||| ||||||||||||| ||| | ||||| || |||
Sbjct 2420 AGATTTTTAATGTAATGATTAGGAACGCATCTCTAGTTTCATTGTATTGTAACCAG-TAT 2478
Query 2464 GACTAACGCC-TATCTGGATAATTCTGTATGAGTTTTTGGAAGACAATTCATTAGGTTTT 2522
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2479 GACTAACGCCATTTCTGGATAATTCTGTATGAGTTTTTGGAAGACAATTCATTAGGTTTT 2538
Query 2523 GATGCTATAACTTAGATTCTAGTTTTGATGCTTT 2556
|||||||| ||||||| ||||||||||||
Sbjct 2539 GATGCTAT------GATTCTAATTTTGATGCTTT 2566
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126872198847
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5