BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494889
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48370.1 | Symbols: | Thioesterase/thiol ester dehydrase-is... 2019 0.0
> AT5G48370.1 | Symbols: | Thioesterase/thiol ester dehydrase-isomerase
superfamily protein | chr5:19598523-19600584 REVERSE
LENGTH=1532
Length=1532
Score = 2019 bits (1093), Expect = 0.0
Identities = 1264/1347 (94%), Gaps = 10/1347 (1%)
Strand=Plus/Plus
Query 68 CTTCCCCAATTTTCATAAACCCAGAAAGAAAGCTTCTCACTTTCTTCATCCAACCATGAA 127
||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 18 CTTCCCCCATTTTCAAAAACCCAGAAACAAAGCTTCTCACTTTCTTCACCCAACCATGAA 77
Query 128 TTCACCAAGACCCATCTCCGTCGTCTCCACCTTCGCTTCACCATCCTCC-CCTTGTGACT 186
||| ||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 78 TTCCCCAAGACCCATCTCCGTCGTCTCCACCTTCGCTTCACCATCCTCCACC-TCTGACC 136
Query 187 CAA-CC-AAGAAGCCTCTGAGTTTATGGCCTGGTATGTACCACTCACCCGTCACCACAGC 244
||| || || || ||| | || |||||||| ||||||||||| ||||| |||||||| ||
Sbjct 137 CAACCCGAA-AACCCT-TAAGCTTATGGCCAGGTATGTACCATTCACCTGTCACCACCGC 194
Query 245 TCTATGGGAAGCCAGATCCAAAATCTTCGAATCACTTCTTGATCCTCCTAAAGACGCTCC 304
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 195 TCTTTGGGAAGCCAGATCCAAAATCTTCGAATCTCTTCTCGATCCTCCTAAAGACGCTCC 254
Query 305 ACCACAGAGCCAGCTTCTCACCAGAACACCTTCTCATAGCCGTACCACCATTTTCTACCC 364
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 255 ACCACAGAGCCAGCTTCTCACCAGAACTCCTTCTCATAGCCGTACCACCATTTTCTACCC 314
Query 365 TTTCTCTTCTGATTTCATTCTCCGGGAACAATACAGAGATCCATGGAACGAGGTCCGTAT 424
|||||| |||||||||||||| | || |||||||||||||| |||||||||||||||||
Sbjct 315 TTTCTCCACTGATTTCATTCTCAGAGAGCAATACAGAGATCCTTGGAACGAGGTCCGTAT 374
Query 425 TGGGATCTTGCTCGAAGATCTCGATGCTTTAGCCGGCACTATCTCTGTTAAGCATTGTTC 484
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 375 CGGGATCTTGCTCGAAGATCTCGATGCTTTAGCCGGCACTATCTCCGTCAAGCATTGTTC 434
Query 485 TGATGATGATAGTACAACGAGGCCACTCTTGCTTGTTACAGCTTCTGTTCATAAGATTGT 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGATGATGATAGTACAACGAGGCCACTCTTGCTTGTTACAGCTTCTGTTCATAAGATTGT 494
Query 545 ATTGAAGAAGCCGATTTGTGTCGACATTGATCTCAAGATTGTTGCTTCTGTCATTTGGGT 604
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CTTAAAGAAGCCGATTTGTGTCGACATTGATCTCAAGATTGTTGCTTCTGTCATTTGGGT 554
Query 605 TGGTCGTTCTTCTATCGAGATTCAACTCGAAGTTATGCAATCCGAATTGAAAGATGTCAA 664
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TGGTCGTTCATCTATCGAGATTCAACTCGAAGTTATGCAATCCGAATTGAAAGATGTCAA 614
Query 665 GGCTTCTTCGGATTCGGTTGCTTTAACTGCTAATTTCATTTTTGTGGCCCGTGACTCAAA 724
||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 615 GGCTTCTTCAGATTCTGTTGCTTTAACTGCAAATTTCATTTTTGTGGCGCGTGATTCTAA 674
Query 725 GACTGGTAAAGCTGCTCCTATTAACCGGCTTTCTCCTGAAACCGAGGTCGA-AAAGCTTT 783
||||||||||||||||||||| ||||| |||||||||||||||||||| || ||| |||
Sbjct 675 GACTGGTAAAGCTGCTCCTATCAACCGTCTTTCTCCTGAAACCGAGGTTGAGAAA-CTTC 733
Query 784 TATTTGAGGAAGCTGAAGCTAGGAATAACTTGAGGAAGAAGAAGAGAGGAGGTGACAGAA 843
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 734 TCTTTGAGGAAGCTGAAGCTAGGAATAACTTAAGGAAGAAGAAGAGAGGAGGTGACAGAA 793
Query 844 GGGAATTTGATCACGGGGAGTGTAAGAAGCTCAAGGCTTGGTTGGCTGAAGGAAGGATCT 903
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 794 GGGAATTTGATCACGGGGAGTGTAAGAAGCTTGAGGCTTGGTTGGCTGAAGGAAGGATTT 853
Query 904 TCTCTGATATGCCAGCTCTTGCTGACAGAAACAGCATTCTTCTTAAAGATACCCGTCTTG 963
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 854 TCTCTGACATGCCAGCTCTTGCTGACAGAAACAGCATTCTTCTTAAAGACACTCGTCTTG 913
Query 964 AAAATTCGCTAATATGTCAACCGCAGCAGAGGAACATCCATGGGAGGATCTTTGGAGGGT 1023
| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 914 AGAATTCGCTGATATGCCAACCGCAGCAGAGGAACATCCATGGTAGGATCTTTGGAGGGT 973
Query 1024 TTTTGATGCACAGAGCGTTTGAGTTGGCCTTCTCCACAGCTTATACGTTTGCGGGTCTAG 1083
|||| ||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 974 TTTTAATGCATAGAGCATTTGAGTTGGCTTTCTCTACTGCTTATACGTTTGCGGGTCTAG 1033
Query 1084 TGCCTTACTTCTTAGAAGTTGATCACGTCGATTTCCTAAGACCGGTGGATGTTGGTGATT 1143
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1034 TGCCTTACTTCTTAGAAGTTGATCACGTCGATTTCCTAAGACCGGTGGACGTCGGGGATT 1093
Query 1144 TCTTACGTTTCAAATCCTGTGTTCTTTACACTCAACTGGATAAACTAG-ATTGTCCGCTC 1202
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1094 TCTTACGTTTCAAATCCTGTGTTCTTTACACTCAACTGGATAAAC-AGGATTGTCCGCTC 1152
Query 1203 ATCAATATCGAAGTTGTTGCCCATGTTACAAGCCCAGAAATTCGTTCCAGTGAGGTTTCT 1262
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1153 ATCAATATCGAAGTTGTTGCTCATGTTACAAGTCCAGAGATTCGCTCCAGTGAGGTTTCA 1212
Query 1263 AATACATTCTACTTCAAGTTCACTGTACGACCCGAGGCAAAGGCCAGAAACAATGGGTTT 1322
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 1213 AATACATTCTACTTCAAGTTCACTGTAAGGCCAGAGGCAAAGGCCAGAAACAATGGGTTT 1272
Query 1323 AAGCTTCGAAACGTAGTTCCTGCCACAGAGGAAGAAGCTCGTCATATCCTCGAGCGCATG 1382
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 AAACTTCGAAATGTAGTTCCTGCCACAGAGGAAGAAGCTCGTCATATCCTCGAGCGCATG 1332
Query 1383 GATGCAGAAGCTTTGAACTCGAGCAAA 1409
||||||||||||||||| || ||||||
Sbjct 1333 GATGCAGAAGCTTTGAAGTCAAGCAAA 1359
Score = 69.4 bits (37), Expect = 9e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1413 TATCCTCTGACCACAAATTAACTAGAAATGTAGATGC 1449
|||||||||||||||||||||||||||||||||||||
Sbjct 1434 TATCCTCTGACCACAAATTAACTAGAAATGTAGATGC 1470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5