BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494891
Length=2492
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48380.1 | Symbols: BIR1 | BAK1-interacting receptor-like ki... 3517 0.0
> AT5G48380.1 | Symbols: BIR1 | BAK1-interacting receptor-like
kinase 1 | chr5:19604089-19607059 REVERSE LENGTH=2756
Length=2756
Score = 3517 bits (1904), Expect = 0.0
Identities = 2329/2526 (92%), Gaps = 62/2526 (2%)
Strand=Plus/Plus
Query 3 GTCATTGCGTTCTCATCACCAGTGTCTCTCTTTTCTTTGCCCCATTCTTCACGAACTTTC 62
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 7 GTCATTGCGTTCTCATCATCAGTGTCTCTCTTTTCTTTGCCCCATTCTTCACGAACTTTC 66
Query 63 ACAACACGACGACGACGATCCAAAGTCTCAGTCAACTCACTCACCAATACGACTCCTTTA 122
|| | |||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 67 ACTAGACGACGACGACGATCCAAAGTCCCAGTCAACTCACTCACAAAGACGACTCCTTTA 126
Query 123 TTAAATTATTTCTAAGTCCTTTCTTC-T--TCATCAT--TCAT-A---AT---CACTTAG 170
|||||||||| | || |||||||||| | ||||||| |||| | || |||||||
Sbjct 127 TTAAATTATTCCCAACTCCTTTCTTCATCATCATCATCATCATCATTCATAACCACTTAG 186
Query 171 CCACAGATGCGATTTTCTTCTTCTTCTCCTTCTTCATTGTGTTCTTCAACACTTATGAAC 230
|||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 187 CCACAGATGCGA-----TT-TTCTTCTCCTTCTTCATTGTGCTCTTCAACACTTATGAAC 240
Query 231 AAGAGCACCACCACCACG---ACGAC-A--ATAAAGACCAAAGCTTTCGTTTTGTATCTC 284
|||||||||||||||||| ||||| | | ||||||||||||||||||||||| | ||
Sbjct 241 AAGAGCACCACCACCACGACAACGACGACTACAAAGACCAAAGCTTTCGTTTTGTGTTTC 300
Query 285 TGATTTTGATTCGATTTTGATGTTCATCGGAGAGAACCCTTGATTTTGTTTCTGTAGTTT 344
|||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 301 TGATTTTGATTCGATTTTGATGCTCATCGAAGAGAACCCTTGATTTTGTTGCTGTAGTTC 360
Query 345 ATAGAGA-TTTACCCATTTTGTGGAATTTAGGGGATTTATGATGATGGGTAGGTTAGTTT 403
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 361 ATAGAGATTTTACACATTTTGTGGAATTTAGTGGATTTATGATGATGGGTAGGTTAGTTT 420
Query 404 TCGCAATTTGGCTGTGGAATTGTCTCTGTTGTTTGCTGCTACTGT-GTACCTTGATCGAT 462
| | ||| ||||| | ||||||||| |||||||||||||| | | | |||| | ||
Sbjct 421 TTGTAATCTGGCTCTATAATTGTCTC---TGTTTGCTGCTACTCTCG-AGCTTGGTTGAC 476
Query 463 GCAAATCAGGCCAACGTAGATTGCTTGAGGACCTTTAAATCTCAAGTTGAGGATCCAAAT 522
|| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 477 GCGGATCAGGCCAACATAGATTGCTTAAGGACCTTTAAATCTCAAGTAGAGGATCCAAAT 536
Query 523 GGATATTTATCGAGTTGGGTTTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGT 582
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGATATTTATCGACTTGGGTTTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGT 596
Query 583 GGTGTGACTTGTTGGCATGATGATGAGAATAGGGTTTTGAGTATTAAGCTCTCTGGTTAT 642
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 597 GGTGTGACTTGTTGGCATGATGATGAGAATAGGGTTTTGAGTATTAAGCTATCTGGTTAT 656
Query 643 GGTCTTAGAGGAGTGTTTCCTCTTG-GGATTAAGAAATGTTCTGACT-TGACTGGTCTAG 700
|||||||||||||||||||||| || || ||||| |||| |||| | | |||||| |||
Sbjct 657 GGTCTTAGAGGAGTGTTTCCTCCTGCGG-TTAAGCTATGTGCTGA-TCTCACTGGTTTAG 714
Query 701 AGCTTTCTAGAAACAACTTCTCTGGACCTTTACCATCCAATC-TTA-CTGATGTGATTCC 758
| ||||||||||||||||||||||||||||||||| |||| | ||| | | |||||||
Sbjct 715 ATCTTTCTAGAAACAACTTCTCTGGACCTTTACCAGCCAA-CATTAGCACCT-TGATTCC 772
Query 759 ACTTGTTACAACTT-TGGACCTCTCCTTCAATAGTTTTTCTGGTGAAATCCC--TGTTAG 815
||||||||| | || | |||||||||| |||||| || |||||||||||||| |||| |
Sbjct 773 ACTTGTTACGA-TTCTAGACCTCTCCTACAATAGCTTCTCTGGTGAAATCCCTATGTT-G 830
Query 816 TATCTCAAACATTACCTTTTTGAACTCTCTTATGCTTCAGAATAACCGGTTCTCGGGTAC 875
||||| |||||||||||||||||| |||||||||||||| |||||| |||| |||||||
Sbjct 831 -ATCTCCAACATTACCTTTTTGAACACTCTTATGCTTCAGCATAACCAGTTCACGGGTAC 889
Query 876 TCTTCCTCCCGAGCTAGTGCTGCTTGGACGGCTCAAAACCTTCTCTGTGGCTAACAATCT 935
|||||||||| |||||| || ||||||||||||||||| ||||||||| || ||||||
Sbjct 890 TCTTCCTCCCCAGCTAGCGCAACTTGGACGGCTCAAAACATTCTCTGTGTCTGACAATCG 949
Query 936 TCTCGTTGGTCCTATCCCGAATTTCAACCAAACCTTGAAATTTGGGGC-GGAGA-ACTTT 993
|||||||||||||||||| |||||||||||||||||| | ||| || ||| | |||
Sbjct 950 TCTCGTTGGTCCTATCCCAAATTTCAACCAAACCTTGCAGTTT-AAGCAGGA-ATTGTTT 1007
Query 994 GATAATAACCCGGGAT-TGTGTGGTAAGCCTCTGGATGATTGTAAGAGTGCTTCTAGCTC 1052
| |||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1008 GCTAATAA-CCTGGATCTGTGTGGTAAGCCTCTAGATGACTGTAAGAGTGCTTCTAGCTC 1066
Query 1053 TCGTGGTAAAGTTGTTATTATAGCGGCAGTTGGTGGATTGACTGCGGCAGCATTAGTCGT 1112
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1067 TCGTGGTAAAGTTGTTATTATAGCGGCAGTTGGTGGACTGACTGCAGCAGCATTAGTCGT 1126
Query 1113 TGGGGTTGTTTTGTTCTTCTATTTCCGTAAATTGGGTGTTGTTCGGAAGAAGCAGGATGA 1172
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1127 TGGGGTTGTTTTGTTCTTCTATTTCCGTAAATTGGGTGCTGTTCGGAAGAAGCAGGATGA 1186
Query 1173 TCCTGAAGGAAACAGATGGGCAAAGAGCTTGAAAGGACAGAAAGGCGTCAAGGTTTTCAT 1232
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1187 TCCTGAAGGAAACAGATGGGCAAAGAGCTTGAAAGGACAGAAAGGTGTTAAGGTTTTCAT 1246
Query 1233 GTTTAAGAACTCGGTTTCAAAGATGAAATTAAGCGATCTTATGAAGGCAACAGAGGAATT 1292
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 GTTTAAGAAATCGGTTTCAAAGATGAAATTAAGCGATCTTATGAAGGCAACAGAGGAATT 1306
Query 1293 CAAGAAAGATAATATCATTGCAACAGGAAGAACAGGAACTATGTATAAAGGTAGGCTTGA 1352
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1307 CAAGAAAGATAATATCATTGCAACAGGAAGAACAGGAACTATGTACAAAGGTAGGCTTGA 1366
Query 1353 AGACGGGACTCCGCTTATGATAAAGAGGTTGCAGGATTCTCAACGCTCTGAGAAAGAGTT 1412
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 AGACGGGTCTCTACTTATGATAAAGAGGTTGCAGGATTCTCAACGCTCTGAGAAAGAGTT 1426
Query 1413 TGACGCAGAGATGAAGACTTTGGGCTCCGTAAAAAACAGAAACTTAGTCCCCCTCTTGGG 1472
||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1427 TGATGCAGAGATGAAGACTTTGGGCTCTGTTAAAAACAGAAACTTAGTCCCTCTCTTGGG 1486
Query 1473 CTATTGTGTTGCGAATAAGGAGAGGCTTCTAATGTACGAGTACATGGCAAACGGTTACCT 1532
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1487 CTATTGTGTTGCCAATAAGGAGAGGCTTCTAATGTATGAGTACATGGCAAACGGTTACCT 1546
Query 1533 TTATGATCAGTTACATCCTGCAGATGAAGAATCCTTCAAGCCCTTGGATTGGCCTTCAAG 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1547 TTATGATCAGTTACATCCTGCAGATGAAGAATCCTTCAAGCCCTTGGATTGGCCTTCAAG 1606
Query 1593 GCTGAAAATCGCGATTGGGACGGCAAAAGGATTGGCATGGCTTCACCACAGCTGCAACCC 1652
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1607 GCTGAAAATCGCGATTGGGACGGCAAAAGGATTGGCATGGCTTCATCATAGCTGCAACCC 1666
Query 1653 GAGAATTATCCATCGCAACATAAGCTCGAAATGCATATTGTTGACTGCAGAATTCGAGCC 1712
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1667 GAGAATCATCCATCGCAACATAAGCTCGAAATGCATATTGTTGACTGCAGAGTTTGAGCC 1726
Query 1713 CAAGATCTCGGATTTCGGTCTAGCTAGGCTGATGAACCCAATTGATACCCATCTAAGCAC 1772
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1727 AAAGATCTCGGATTTCGGTCTAGCTAGGCTGATGAACCCAATTGATACCCATTTAAGCAC 1786
Query 1773 ATTCGTCAATGGAGAATTTGGGGATTTCGGTTATGTTGCTCCCGAGTATTCAAGAACCAT 1832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1787 ATTCGTCAATGGAGAATTTGGGGATTTCGGTTATGTTGCTCCCGAGTATTCAAGAACCAT 1846
Query 1833 GGTTGCAACTCCGAAAGGAGATGTTTACAGCTTTGGGGTTGTGCTTCTAGAGCTAGTAAC 1892
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 1847 GGTTGCAACTCCAAAAGGAGATGTCTACAGCTTCGGTGTTGTGCTTCTAGAGCTAGTAAC 1906
Query 1893 AGGCCAAAAAGCAACGAGTGTGACAAAAGTATCTGAAGAA---GCTGAGGAAGAAAGCTT 1949
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 1907 GGGCCAAAAAGCAACGAGTGTAACAAAAGTATCTGAAGAAAAAGCTGAGGAAGAAAACTT 1966
Query 1950 CAAGGGTAACCTTGTGGAATGGATTACAAAGCTATCAAGTGAATCAAAACTGCAAGAAGC 2009
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1967 CAAGGGTAACCTCGTGGAATGGATTACAAAGCTATCAAGTGAATCAAAACTGCAGGAAGC 2026
Query 2010 AATCGACAGGTCCTTACTCGGGAACGGTGTGGATGATGAGATCTTCAAAGTGCTCAAAGT 2069
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2027 AATCGACAGGTCCTTACTTGGGAACGGTGTGGATGATGAAATCTTCAAAGTACTCAAAGT 2086
Query 2070 AGCATGCAACTGTGTTCTACCGGAAATAGCAAAGCAGAGGCCAACCATGTTTGAAGTCTA 2129
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2087 AGCATGCAACTGCGTTCTACCGGAAATAGCAAAGCAGAGGCCAACCATGTTTGAAGTTTA 2146
Query 2130 TCAGCTCCTTAGAGCCATTGGAGAGAGCTACAACTTCACCGCTGACGATGATATCTTAAT 2189
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2147 TCAGCTTCTAAGAGCCATTGGAGAGAGCTACAACTTCACCGCCGATGATGATATCTTAAT 2206
Query 2190 CCCCTCTGAATCAGGTGAAGGCGATTTCATCGAAGAGCTCATAGTTGCTCGCTGATCAAA 2249
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2207 CCCATCTGAATCAGGTGAAGGCGATTTCATTGAAGAGCTCATAGTTGCTCGTTGATCAAG 2266
Query 2250 AGGAAGGGTAGGACTTGTGAAACAAACATCTCTAGTCGTAGCAGTCCAAAGATATATAT- 2308
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267 AGGAAGGGTAAGAATTGTGAAACAAACATCTCTAGTCGTAGCAGTCCAAAGATATATATA 2326
Query 2309 --GTATAAGTATTGttttttttttttttttGGGTTCCCGTCGTCGATGGTGTGTTGTAAT 2366
||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 2327 ATGTATAAGTATTGTTTTTATTTTATTTTTGGGTTCTCGTCGTCGATGGTGTGTTGTAAT 2386
Query 2367 ATGATATATTGTTAGATGCACTCTCTCTTATTACTATGTACTGAGCTTTGGGTGTGTAGT 2426
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 2387 ATGATATATTGTTAGATGCACTCTCT-T-ATTACTATGTACTAAGCTTTGGGTGTGTGGT 2444
Query 2427 ACAGTCACTGGTTTGGTTTTGCCACTGCGTCTTTGCTGCTTTTTAAAATTTTTGCAGCAA 2486
|||||||||| ||||||||||||||| |||||||||||| || || |||| ||||||
Sbjct 2445 ACAGTCACTGTTTTGGTTTTGCCACTACGTCTTTGCTGCCTTATA---TTTT-GCAGCAC 2500
Query 2487 TAATTT 2492
||||||
Sbjct 2501 TAATTT 2506
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123661514495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5