BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494895
Length=2583
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48400.2 | Symbols: ATGLR1.2, GLR1.2 | Glutamate receptor fa... 3847 0.0
AT5G48410.1 | Symbols: ATGLR1.3, GLR1.3 | glutamate receptor 1.... 2959 0.0
> AT5G48400.2 | Symbols: ATGLR1.2, GLR1.2 | Glutamate receptor
family protein | chr5:19616244-19619246 FORWARD LENGTH=2604
Length=2604
Score = 3847 bits (2083), Expect = 0.0
Identities = 2412/2571 (94%), Gaps = 21/2571 (1%)
Strand=Plus/Plus
Query 28 TTTCTTCTTGTTCTGCTTTTCTTCATCTCCAACTGTTTTGCTTCGAGTCAAAACAACGAT 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 40 TTTCTTCTTGTTCTGCTTTTCTTCATCTCCAACTGTTTTGCTTCGAGTCAAAACAACGAT 99
Query 88 GATGATGAACGGGTTCAGATTCGGGTCGGGTTGGTTTTGGATTTGGGTTCCTTGGAAGGG 147
|||||| ||||| ||| | | |||||||||||||||||||||||||||||| ||||||||
Sbjct 100 GATGATAAACGGATTCGGGTCCGGGTCGGGTTGGTTTTGGATTTGGGTTCCGTGGAAGGG 159
Query 148 AAGATAGTGAGAAGCTCTGTTTCCATGGCGCTTTCCGATTTCTACG-CTATTAACAATGA 206
||||||||| | || |||||||||||||| ||||| |||||||||| | | | |||||||
Sbjct 160 AAGATAGTGCGGAGTTCTGTTTCCATGGCTCTTTCTGATTTCTACGAC-AATCACAATGA 218
Query 207 CTACAAAACAAGAGTCTCTCTTTTAGTCAGAGATTCTCATGGAGAGCCTCTCCTTGGTCT 266
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 219 CTACAAAACAAGACTCTCTCTTTTAGTCAGAGATTCTCATGGAGAGCCTCTTCTTGCTCT 278
Query 267 TGCTTCTGTTGTAGATTTGCTGAAAACAGAAGGAGTGGAAGTGATAATTGGCGGTAACTC 326
|| ||| ||||||||||||||| |||||||||||||| ||| ||||||||||| |||||
Sbjct 279 TGATTCAGTTGTAGATTTGCTGCAAACAGAAGGAGTGCAAGCAATAATTGGCGGGAACTC 338
Query 327 GTTGCTAGAAGCGAAGCTTTTGGCGGAACTTGGAGAGAAAGCTAGGGTTCCTGTGATTTC 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GTTGCTAGAAGCGAAGCTTTTGGCGGAACTTGGAGAGAAAGCTAGGGTTCCTGTGATTTC 398
Query 387 ACTTAACTCTCCCATGTCATTGTCATTGAGCAAATACACGCACTTGATCCAAGCCACACA 446
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 399 ACTTAACTCTCCCATGTCATTGTCATTGAGCAAATACACTCACTTGATCCAAGCCACACA 458
Query 447 TGACTCTGCCTCTGAGGTTAAGGGAATTACAGCTTTCCTCCATGGGTTTGATTGGAACAG 506
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 459 TAACTCTGCCTCTGAGGTTAAAGGAATTACAGCTTTCCTCCATGGGTTTGATTGGAACAG 518
Query 507 TGTTGCTCTTG-TTTATGAAGATGACGATGACTGGAGAGAGAGTATGCATTTTATGGTAG 565
||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 519 TGTTGCTCTTGTTTTA-GAAGATCACGATGACTGGAGAGAGAGTATGCATTTTATGGTGG 577
Query 566 ACCATTTCCATGAGAACAACGTTCATTTACAGTCCAAGGTTGGTTTTAGTGTCTCTTCGA 625
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||
Sbjct 578 ACCATTTCCATGAGAACAACGTTCATGTACAGTCCAAGGTTGCTTTTAGTGTCACTTCGA 637
Query 626 GTGAGGATTCTTTGATGGATCGGTTACGGAAGCTTAAGGACTTGGGAACAACAGTCTTTG 685
|||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||
Sbjct 638 GTGAGGATTCTTTGATGGATCGATTACGGGAGCTTAAGGACTTGGGAACAACTGTCTTTG 697
Query 686 TTGTTCATTTGTCTGAAGTTCTTGCAACTCGTCTCTTCCCATGTGCTGAGAAATTAGGGT 745
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 698 TTGTTCACTTGTCTGAAGTTATTGCAACTCGTCTCTTCCCATGTGCTGAGAAATTAGGGA 757
Query 746 TGATGGGTGAATGGTTTGCTTGGATTCTAACTGCCAAAAGCATGAGCAGTTTACATG--- 802
||||||||||| |||||||||||||||| ||| ||| ||||||||||||||| ||||
Sbjct 758 TGATGGGTGAAGGGTTTGCTTGGATTCTTACTTCCAGAAGCATGAGCAGTTTTCATGATC 817
Query 803 AGTCCATTGATGATTTTGCAAAGGAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTATA 862
||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 AGTTCATTGACGATTTAACAAAGGAGGCAATGGAAGGTGTGGTTGGTTTCAAGTCTTATA 877
Query 863 TACCAGTGTCAAAAGAGCTTCACAACTTCACTTTGAGATGGAGGAAATCACTCCCTGTTG 922
||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 878 TACCAATGTCAAAAGAGCTTCACAACTTCACTTTGAGATGGAGAAAAACACTCCCTGTTG 937
Query 923 AAGAAGTTACTGGGAGTGAGATTACTCGGTTGAGCATCTCTGGCGTTTGGGCTCACGATA 982
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 938 AAGAAGTTACTGGGAGTGAGATTACTCGGTTGAGTATCTCTGGCGTATGGGCTCATGATG 997
Query 983 TCGCTTGG-GCTCTGGCGAGTGCAGCTGAAGTTACAAGGATGCCAAATGTGTCATCAACT 1041
|||||||| | ||||||||||||||||||||| ||||||||||||| |||| ||||||||
Sbjct 998 TCGCTTGGAG-TCTGGCGAGTGCAGCTGAAGTGACAAGGATGCCAACTGTGACATCAACT 1056
Query 1042 CTCCTTGAGGCAATCTCAGAGAGTAGATTTAAGGGTTTGAGTGGTGA-TTTCCAGTTGCA 1100
||||||||||| || ||| || || ||||||||| |||||||| | ||| |||||| |
Sbjct 1057 CTCCTTGAGGCCATAAAAGAAAGCAGGTTTAAGGGTCTGAGTGGTAACTTT-CAGTTGGA 1115
Query 1101 TGATAAGAAGTTGTTATCAAAAAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAG 1160
||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 1116 TGATATGAAGTTGTTATCAGACAAGTTTGAGATTGTGAATATGATAGGATCAGGTGAGAG 1175
Query 1161 AAGGGTAGGATTCTGGAATTCTAATGGTAGTTTCAGCAATAGAAGACATTTATCTTCTAC 1220
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1176 AAGGGTAGGATTCTGGAATTCTAATGGTAGTTTCAGCAATAGAAGACAATTATCTTCTAC 1235
Query 1221 TCATGACAAGCTGGAGACCATCATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAAAGGGAG 1280
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1236 TCATGACAATCTGGAGACCATAATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAAAGGGAG 1295
Query 1281 TAGTCTAAGAGAGAGCGGTAGAAAAAAGCTGAGGGTT-TTGGTTACATCTAGCAATAGAT 1339
||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||
Sbjct 1296 AAGTCTAAGAGAGAGCGGTAGAAAAAAGCTTAGGGTTCTT-GTTACATCTAGCAATAGAT 1354
Query 1340 TCCCAAGACTGATGAAGGTAGAGACTGATCCAGTAACAAATGCTATAACAATTGTCGAAG 1399
|||||||||||||||| || |||||||||||| ||||| ||| ||||||||||||||||
Sbjct 1355 TCCCAAGACTGATGAAAGTGGAGACTGATCCAATAACACATGAGATAACAATTGTCGAAG 1414
Query 1400 GGTTCTGTATAGAGGTCTTTCAGGCATCCATTGCACCTTTCAACTATGAAGTGGAGTACA 1459
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GGTTCTGTATAGAAGTCTTTCAGGCATCCATTGCACCTTTCAACTATGAAGTGGAGTACA 1474
Query 1460 TACGTTGGCTCAATGGAACTAACTACACCAAGCTTGCATATGCACTTCATAGCCAGAAAG 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 TACGTTGGCTCAATGGAACTAACTACACCAAGCTTGCATATGCACTTCATAGCCAGAAAG 1534
Query 1520 ACAAATATGATGCGGCCGTGGGAGATATTACAATCACTTCTGATAGATCGATGTATGTCG 1579
||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1535 ACAAATATGATGCTGCTGTGGGAGATATTACAATTACTTCCGATAGATCGATGTATGTTG 1594
Query 1580 ATTTTACGTTGCCATTCACCGAAATGGGTCTTGGAATTGTAGCAGCAAAGGAGAGAAGTA 1639
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 ATTTTACGTTGCCATACACTGAAATGGGTCTTGGAATTGTAGCAGCAAAGGAGAGAAGTA 1654
Query 1640 TGTGGGTGTTCTTCCAACCTCTAACACCAAATCTTTGGATAACAAGTGCAGCATTCTTTG 1699
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1655 TGTGGGTGTTCTTCCAACCTCTAACACCAAACCTTTGGATAACAAGTGCAGCTTTCTTTG 1714
Query 1700 TCTTGACGGGTATGATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGAGTTCCAAGGAT 1759
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1715 TCTTGACGGGTATTATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGAGTTCCAAGGAT 1774
Query 1760 CTTGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCTTGTTTATGCTC 1819
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1775 CTTGGCCTCAACAGATTGGAGTTGTGATTTGGTTTGGCTTCTCTACCCTTGTTTATGCTC 1834
Query 1820 A-CAGGGAGAAGCTAAAACACAACTTATCAAGATTTGTAGTTACAGTTTGGGTATTTGCG 1878
| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 ATC-GGGAGAAGCTACAACACAACTTATCAAGATTTGTAGTTACAGTTTGGGTATTTGCG 1893
Query 1879 GTGCTCATATTGGTTACAAGTTACACTGCAACATTGACATCAATGATGACGGTGCAACAA 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 GTGCTCATATTGGTTACAAGTTACACTGCAACATTGACATCAATGATGACGGTGCAACAA 1953
Query 1939 ATACGATTTAACGCCAATGAAGACTATGTTGGTCACCTCTCGGGCTCCCTCATCGCAAAT 1998
|||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 1954 ATACGATTCAACGCCAATGAAGATTATGTGGGTCACCTCTCGGGATCCCTCATCGCAAAT 2013
Query 1999 GCGGCCCTCACCAATTCCAGCCTCCGAACAATGAGATTATTGGGTCTCAATACTTCAGAA 2058
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2014 GCGGCCCTCACCAATTCCAGCCTCAGAGCAATGAGATTATTGGGTCTCAATACTTCAGAA 2073
Query 2059 GATTATGCTCAAGCCTTGTTGAATAAAAATGTCTCATATATTGTCAGTGAGTTGCCATAC 2118
|||||||||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||
Sbjct 2074 GATTATGCTCAAGCTTTGATGAATAAAAGTGTCTCATATATTGTTAGTGAGTTGCCATAC 2133
Query 2119 CTCAAAGTCCTCCTTGGCGAGTATCCTGGACATTTTCTCATGGTCAAGACACAATCTACC 2178
|| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2134 CTGAAAATCCTCCTTGGCGAGAATCCTGGACATTTTCTCATGGTCAAGACACAATCTACC 2193
Query 2179 ACCAATGGCTTTGGCTTTATGTTTCAAAAGGGCTCGGAGTTGGTGCATAATGTTTCTCGG 2238
|||||||| |||||||| ||||| || ||||| || ||||||| || |||||| || |||
Sbjct 2194 ACCAATGGTTTTGGCTTCATGTTCCAGAAGGGGTCCGAGTTGGCGCCTAATGTGTCCCGG 2253
Query 2239 GAGATCGCGAAGCTAAGGACGAGCGAGAGACTAAACGAGATGGAGAGAAGATGGTTTGAT 2298
||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 2254 GAGATTGCGAAGCTGAGGACAAGCGAGAGGCTAAACGAGATGGAGAGAAGATGGTTTGAT 2313
Query 2299 AAACAACTCCCATACACAACTGATGATACATCAAATCCTATAACCCTATATAGATTCCGC 2358
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2314 AAACAGCTTCCATACACAACCGATGATACATCAAATCCTATAACCCTATATAGATTCCGT 2373
Query 2359 GGTTTGTTTATGATCACCGGAGTTTCATTCGTTTTCGCTCTTGCAGTACTTCTCATTCTC 2418
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2374 GGTTTGTTTATGATCACCGGAGTTTCATTCGCTTTCGCTCTTGCAGTACTTCTCATTCTT 2433
Query 2419 TGGCTCCGAGAAAAATGGGAAGTTGTTGTGAATTCAGTCAATCTATACCTCTCACAACAA 2478
||||||||||||| ||||||| | |||||||||| |||||| ||||| ||||||||| |
Sbjct 2434 TGGCTCCGAGAAAGATGGGAAATCCTTGTGAATTCGGTCAATATATACTTCTCACAACGA 2493
Query 2479 CTTAGGCATTTCAGGATCCTTTTCACAAGAACTATCCATCCTAGTCCCCTCG------AT 2532
||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 2494 CTTAGACATTTCAGGATCCTCTTCACAAGAACTATCCATCCTAGTCCCCTCGGCCTCGAT 2553
Query 2533 AACCCAATTGGCGAGAATGCGGTTCAAATGGCTCAACGTAACAGACGATAG 2583
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2554 AACCCCATTGGCGAGAATGCGGTTCAAATGGCTCAACGTAACAGACGATAG 2604
> AT5G48410.1 | Symbols: ATGLR1.3, GLR1.3 | glutamate receptor
1.3 | chr5:19620267-19623425 FORWARD LENGTH=2780
Length=2780
Score = 2959 bits (1602), Expect = 0.0
Identities = 2265/2581 (88%), Gaps = 62/2581 (2%)
Strand=Plus/Plus
Query 28 TTTCTTCTTGTTCTGCTTTTCTTCATCTCCAACTGTTTTGCTTCGAGTCAAAAC-A--AC 84
|||||||||||| ||||| |||||||||||| | ||||||||| | | ||||| | ||
Sbjct 89 TTTCTTCTTGTTTTGCTTCTCTTCATCTCCAGGTCTTTTGCTTCTACTAAAAACGACGAC 148
Query 85 GATGAT-GA--TGAACGGGTTCAGATTCGGGTCGGGTTGGTTTTGGATTTGGGTTCCTTG 141
| |||| || | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 149 GTTGATGGAGGTAAACGGGTTCAGATCCGGGTCGGGTTGGTTTTGGATTTGGGTTCCTTG 208
Query 142 GAAGGGAAGATAGTGAGAAGCTCTGTTTCCATGGCGCTTTCCGATTTCTACGCTATTAAC 201
||||||||||||||| || ||||||||||||||| |||||| |||||||||||||| |
Sbjct 209 AAAGGGAAGATAGTGAAAAACTCTGTTTCCATGGCTCTTTCCTATTTCTACGCTATTCAT 268
Query 202 AATGACTACAAAACAAGAGTCTCTCTTTTAGTCAGAGATTCTCATGGAGAGCCTCTCCTT 261
||||| |||||||||||||||||| ||| | ||||| | ||||||||||||||||| |||
Sbjct 269 AATGATTACAAAACAAGAGTCTCTGTTTCACTCAGAAACTCTCATGGAGAGCCTCTTCTT 328
Query 262 GGTCTTGCTTCTGTTGTAGAT-TTGCTGAAAACAGAAGGAGTGGAAGTGATAATTGGCGG 320
| ||||||||||| ||||||| || |||||||| |||||||| |||| ||| ||||||||
Sbjct 329 GCTCTTGCTTCTGCTGTAGATCTT-CTGAAAACTGAAGGAGTAGAAGCGATTATTGGCGG 387
Query 321 TAACTCGTTGCTAGAAGCGAAGCTTTT-GGCGGAACTTGGAGAGAAAGCTAGGGTTCCTG 379
||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 388 GAACTCGTTGTTAGAAGCGAAGCTTTTAGG-GGAACTTGGAGAGAAAGCTAGGGTTCCTA 446
Query 380 TGATTTCACTTAACTCTCCCATGTCATTGTCATTGAGCAAATACACGCACTTGATCCAAG 439
||||||||||| ||||||| | ||||||||||| ||||||||||| |||||||||||||
Sbjct 447 TGATTTCACTTGACTCTCCGTTTTCATTGTCATTAAGCAAATACACTCACTTGATCCAAG 506
Query 440 CCACACATGACTCTGCCTCTGAGGTTAAGGGAATTACAGCTTTCCTCCATGGGTTTGATT 499
|||||||||| ||| ||||||||| ||||| |||||| |||| | ||| ||||||||
Sbjct 507 CCACACATGATTCTACCTCTGAGGCAAAGGGGATTACATCTTTTATTAATGTGTTTGATT 566
Query 500 GGAACAGTGTTGCTCTTGTTTATGAAGATGACGATGACTGGAGAGAGAGTATGC-ATTTT 558
||||||||||||||||||||||||||||| | |||||||||||||||||||||| | |||
Sbjct 567 GGAACAGTGTTGCTCTTGTTTATGAAGATCATGATGACTGGAGAGAGAGTATGCAACTTT 626
Query 559 ATGGTAGACCATTTCCATGAGAACAACGTTCATTTACAGTCCAAGGTTGGTTTTAGTGTC 618
|||| || ||||| ||||||||| |||| | ||||||||||||||||||||| ||||
Sbjct 627 -TGGTGGAGCATTTTCATGAGAACGGTGTTCGTGTACAGTCCAAGGTTGGTTTTACTGTC 685
Query 619 TCTTCGAGTGAGGATTCTT-TGATGGATCGGTTACGGAAGCTTAAGGACTTGGGAACAAC 677
||||| |||||||||| || |||||| |||||||| | |||| ||||||||||| || ||
Sbjct 686 TCTTCTAGTGAGGATT-TTGTGATGGGTCGGTTACAGCAGCTGAAGGACTTGGGGACTAC 744
Query 678 AGTCTTTGTTGTTCATTTGTCTGAAGTTCTTGCAACTCGTCTCTTCCCATGTGCT-GAGA 736
|||||||||||||| |||||||||||| ||||||||| | | |||||||||||| | ||
Sbjct 745 TGTCTTTGTTGTTCACTTGTCTGAAGTTATTGCAACTCATTTATTCCCATGTGCTCG-GA 803
Query 737 AATTAGGGTTGATGGGTGAAT-GGTTTGCTTGGATTCTAACTGCCAAAAGC-ATGAGCAG 794
||||||||||||||||| || |||||| |||||| || ||||| |||| | |||| |||
Sbjct 804 GATTAGGGTTGATGGGTG-ATGGGTTTGTTTGGATCCTGACTGCTAAAA-CTATGAACAG 861
Query 795 TTTACATGAGTCCATTGATGATTTTGCAAAGGAGGCAATGGAAGGTGTGGTTGGTTTCAA 854
|| |||||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 862 CTTCCATGAGAACATTGATGATTTCACAAAGCAGGCAATGGAAGGTGTGGTTGGTTTCAA 921
Query 855 GTCTTATATACCAGTGTCAAAAGAGCTTCACAACTTCACTTTGAGATGGAGGAAATCACT 914
|||||| || ||| |||| | ||||||||| || ||||||||||||||||| |||||| |
Sbjct 922 GTCTTACATTCCAATGTCTATAGAGCTTCAAAATTTCACTTTGAGATGGAGAAAATCATT 981
Query 915 CCCTGTTGAAGAAGTTACTGGGAGTGAGATTACTCGGTTGAGCATCTCTGGCGTTTGGGC 974
||||||||||||| | | ||| | ||||||||||| ||||||||| | |||||
Sbjct 982 GCCTGTTGAAGAAG---C-----G-GAGCTAACTCGGTTGAGTATCTCTGGCATATGGGC 1032
Query 975 TCACGATATCGCTTGGGCTCTGGCGAGTGCAGCTGAAGTTACAAGGATGCCAAATGTGTC 1034
|||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
Sbjct 1033 TCACGATATCGCTTTTGCTCTGGCGAGAGCAGCAGAAGTTATAAGGATGCCAAATGTGAC 1092
Query 1035 ATCAACTCTCCTTGAGGCAATCTCAGAGAGTAGATTTAAGGGTTTGAGTGGTGATTTCCA 1094
||||||||||||||||| |||| || ||| ||| ||||| ||||||||||||||||||||
Sbjct 1093 ATCAACTCTCCTTGAGGAAATCACAAAGACTAGGTTTAACGGTTTGAGTGGTGATTTCCA 1152
Query 1095 GTTGCATGATAAGAAGTTGTTATCAAAAAAGTTTGAGATTGTGAATATGATAGGATCAGG 1154
| |||||||||||||||||||||| |||||||||||| | ||||||||||||||| |
Sbjct 1153 ACTAAATGATAAGAAGTTGTTATCAAACAAGTTTGAGATTATCAATATGATAGGATCAAG 1212
Query 1155 TGAGAGAAGGGTAGGATTCTGGAATTCTAATGGTAGTTTCAGCAATAGAAGACATTTATC 1214
||||||||| |||||||||| ||| ||||| |||||||| || |||||||||||||||||
Sbjct 1213 TGAGAGAAGAGTAGGATTCTTGAACTCTAACGGTAGTTTTAGTAATAGAAGACATTTATC 1272
Query 1215 TTCTACTCATGACAAGCTGGAGACCATCATTTGGCCCGGTGGGTCTGCTCAAAGTCCGAA 1274
|||||||||| ||||||| |||||||| || ||||| |||||||||||||||||||||||
Sbjct 1273 TTCTACTCATAACAAGCTTGAGACCATAATCTGGCCAGGTGGGTCTGCTCAAAGTCCGAA 1332
Query 1275 AGGGAGTAGTCTAAGAGAGAGCGGTAGAAAAAAGCTGAGGGTTTTGGTTACATCTAGCAA 1334
||||| |||||||| ||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 1333 AGGGACTAGTCTAATAGATAGCGATAGAAAAAAGCTGAGGGTCTTGGTTACATCTAGCAA 1392
Query 1335 TAGATTCCCAAGACTGATGAAGGTAGAGACTGATCCAGTAACAAATGCTATAACAATTGT 1394
||||||||||||||||||||| || |||||||||||||||||||||| | | ||||||
Sbjct 1393 TAGATTCCCAAGACTGATGAAAGTGGAGACTGATCCAGTAACAAATG--A-ATTAATTGT 1449
Query 1395 CGAAGGGTTCTGTATAGAGGTCTTTCAG-GCATCCATT-GCACCTTTCAACTATGAAGTG 1452
||||||||||||||||| ||||||| | || || ||| | |||||||||||||||||
Sbjct 1450 TGAAGGGTTCTGTATAGAAGTCTTTC-GCGCTTCGATTAG-TCCTTTCAACTATGAAGTT 1507
Query 1453 GAGTACATACGTTGGCTCAATGGAACTAACTAC-ACCAAGCTTGCATATGCACTTCATAG 1511
||||| |||| |||||||||||||| ||||||| | ||| ||||||||||||||||||||
Sbjct 1508 GAGTATATACCTTGGCTCAATGGAAGTAACTACGA-CAATCTTGCATATGCACTTCATAG 1566
Query 1512 CCAGAAAGACAAATATGATGCGGCCGTGGGAGATATTACAATCACTTCTG-ATAGATCGA 1570
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1567 CCAGAAAGACAAATATGATGCGGCCGTGGGAGATATTACAATCACTTC-GAATAGATCGA 1625
Query 1571 TGTATGTCGATTTTACGTTGCCATTCACCGAAATGGGTCTTGGAATTGTAGCAGCAAAGG 1630
|||||| || ||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1626 CGTATGTTGACTTTACGTTGCCATTCACTGAAATGGGTCTTGGAATTGTAGCAGTAAAAG 1685
Query 1631 AGAGAAGTATGTGGGTGTTCTTCCAACCTCTAACACCAAATCTTTGGATAACAAGTGCAG 1690
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1686 AGAGAAGTATGTGGGTGTTCTTCCAACCTTTAACACCAGATCTTTGGATAACAAGTGCAT 1745
Query 1691 CATTCTTTGTCTTGA-CGG-GTATGATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGA 1748
|| |||||||||| ||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1746 TTTTTTTTGTCTTGACCGGAGT-T-ATAGTTTGGTTGATAGAAAGAGCTGAGAACAAAGA 1803
Query 1749 GTTCCAAGGATCTTGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCT 1808
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1804 GTTCCAAGGATCTTGGCCACAACAGATTGGAGTTGTGCTTTGGTTTGGCTTCTCTACCCT 1863
Query 1809 TGTTTATGCTCACAGGGAGAAGCTAAAACACAACTTATCAAGATTTGTAGTTACAGTTTG 1868
||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1864 TGTCTATGCTCATAGGGAAAAGCTAAAACACAACTTATCAAGATTTGTTGTTACAGTTTG 1923
Query 1869 GGTATTTGCGGTGCTCATATTGGTTACAAGTTACACTGCAACATTGACATCAATGATGAC 1928
||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 1924 GGTATTTGCAGTGCTCATACTGACTGCAAGTTACACTGCAACATTGACATCAATGATGAC 1983
Query 1929 GGTGCAACAAATACGATTTAACGCCAATGAAGACTATGTTGGTCACCTCTCGGGCTCCCT 1988
||| ||||| |||||||||||| |||| |||||||| || |||||||| || ||||||||
Sbjct 1984 GGTACAACAGATACGATTTAACTCCAACGAAGACTACGTGGGTCACCTTTCCGGCTCCCT 2043
Query 1989 CATCGCAAATGCGGCCCTCACCAATTCCAGCCTCCGAACAATGAGATTATTGGGTCTCAA 2048
||| ||||||| ||| ||||| | ||||||||||||| ||||||||| ||||||||| ||
Sbjct 2044 CATTGCAAATGTGGCTCTCACTAGTTCCAGCCTCCGAGCAATGAGATCATTGGGTCTTAA 2103
Query 2049 TACTTCAGAAGATTATGCTCAAGCCTTGTTGAATAAAAATGTCTCATATATTGTC-AGTG 2107
|| | | | |||||||||||||||||||||||| || | ||| |||| | |||| | ||
Sbjct 2104 TAGTGCTGCAGATTATGCTCAAGCCTTGTTGAACAAGACTGTTTCATTTGTTGTTGA-TG 2162
Query 2108 AGTTGCCATACCTCAAAGTCCTCCTTGGCGAGTATCCTGGACATTTTCTCATGGTCAAGA 2167
||||||||||||||||||| ||||||||||| |||| ||||||| ||||||||||||
Sbjct 2163 AGTTGCCATACCTCAAAGTTGTCCTTGGCGAGAATCCAACACATTTTTTCATGGTCAAGA 2222
Query 2168 CACAATCTACCACCAATGGCTTT-GGCTTTATGTTTCAAAAGGGCT-CGGAGTTGGTGCA 2225
|||||||||||||||| || ||| |||||||||||||||||||||| || |||||||||
Sbjct 2223 CACAATCTACCACCAACGG-TTTCGGCTTTATGTTTCAAAAGGGCTTCG-AGTTGGTGCC 2280
Query 2226 TAATGTTTCTCGGGAGATCGCGAAGCTAAGGACGAGCGAGA-GACTAAACGAGATGGAGA 2284
|||||| || || || ||| | ||||||||||||||||||| | ||||| ||||||||||
Sbjct 2281 TAATGTGTCCCGAGAAATCTCAAAGCTAAGGACGAGCGAGAAG-CTAAATGAGATGGAGA 2339
Query 2285 GAAGATGGTTTGATAAACAACTCCCATACACAACTGATGATACATCAAATCCTATAACCC 2344
||||||||||||||| ||||| ||||||||||| |||||||||||||||||||| || |
Sbjct 2340 AAAGATGGTTTGATAATCAACTTCCATACACAACCGATGATACATCAAATCCTATTACTC 2399
Query 2345 TATATAGATTCCGCGGTTTGTTTATGATCACCGGAGTTTCATTCGTTTTCGCTCTTGCAG 2404
| || |||||||||||||||||||| |||| ||| |||||||||| |||||||||||| |
Sbjct 2400 TTTACAGATTCCGCGGTTTGTTTATAATCATCGGTGTTTCATTCGCTTTCGCTCTTGCGG 2459
Query 2405 TACTTCTCATTCTCTGGCTCCGAGAAAAATGGGAAGTTGTTGTGAATTCAGTCAATCTAT 2464
||||| |||||||||| ||||| || ||||||||| || ||||| | || | ||||
Sbjct 2460 TACTTGTCATTCTCTGTCTCCGCGACAAATGGGAAATTCTTGTGGA--CA---A-TCTAG 2513
Query 2465 ACCTCTCACAACAACTTAGGCATTTCAGGATCCT-TTTCACAAGAACTATCCATCCTAGT 2523
|||||||||||| |||||| ||||||||||||| ||| |||| |||| ||| |||||
Sbjct 2514 ACCTCTCACAACGACTTAGACATTTCAGGATCCACTTTGT-AAGATCTATACATACTAGT 2572
Query 2524 CCCCTCGATAACCCAATTGGCGAGAA-TGCGGTTCAAATGGCTCAACGTAACAGACGATA 2582
||||| ||| |||| |||||||| || |||||||||||||||||||| || |||| |||
Sbjct 2573 CCCCTTGATGACCCCATTGGCGA-AACTGCGGTTCAAATGGCTCAACAAAATAGACAATA 2631
Query 2583 G 2583
|
Sbjct 2632 G 2632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128226706308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5