BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494897
Length=1416
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48430.1 | Symbols: | Eukaryotic aspartyl protease family p... 1953 0.0
> AT5G48430.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:19627712-19629163 REVERSE LENGTH=1452
Length=1452
Score = 1953 bits (1057), Expect = 0.0
Identities = 1303/1422 (92%), Gaps = 15/1422 (1%)
Strand=Plus/Plus
Query 1 TTTCCAACAATTTTAGACATAAAGACTTAAAAGATGGAAAAGAGTCTTGTTGTCCTCTGC 60
||||||||||| ||| ||| ||| || |||||||||||||||||||| ||||||||||
Sbjct 19 TTTCCAACAATCTTAAACACAAACACGCAAAAGATGGAAAAGAGTCTTCTTGTCCTCTGT 78
Query 61 CTCCTTTTG-TTTTCAGCTTATAGTTACGTCTCTGCTCATAATTATTCACCGAAAACATT 119
||| ||||| |||| | |||||||||||||||| ||| || | ||| |||| ||| | ||
Sbjct 79 CTCATTTTGTTTTTTA-CTTATAGTTACGTCTCGGCTAATTACTATCCACCTAAAGCCTT 137
Query 120 AGTATCAACCGTCTCTAAGAACACAATCTTGCCCATCTTCACCTTCACACTCAACAAAAA 179
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 138 AGTATCAACCGTCTCTAAGAACACAATCTTGCCTATCTTCACCTTCACACTCAACACAAA 197
Query 180 CCAAGAATTTTTCATTCACATCGGCGGGCCCTATCTTGTCCGCAAATGCAACGATGGTCT 239
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 198 CCAAGAGTTTTTCATTCACATCGGCGGTCCCTATCTTGTCCGTAAATGCAACGATGGTCT 257
Query 240 CCCTCGTCCCATCGTCCCTTGCGACTCCCCAGTGTGTGCTCTCACTCGTGGAGTT-AGC- 297
||||||||||||||||||||| | |||||| || |||||||| |||||| || || | |
Sbjct 258 CCCTCGTCCCATCGTCCCTTGTGGCTCCCCCGTATGTGCTCTAACTCGTAGA-TTCA-CT 315
Query 298 CCTCACCAATGCCCTCTTCCCACCAACACAGTCATCAACGGAGTGTGTGCTTGCCAAGCA 357
|||||||||||| ||||||||| ||||| | ||||||| ||||| |||||||||||||||
Sbjct 316 CCTCACCAATGCTCTCTTCCCAGCAACAAAATCATCAATGGAGTATGTGCTTGCCAAGCA 375
Query 358 ACCGCCTTTGAGCCATTCCAACGTCTATGTAACTCTGACCAATTCACTTATGGAGATTTA 417
||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 376 ACCGCTTTTGAGCCATTCCAACGTATATGTAACTCTGACCAATTCACCTATGGAGATTTA 435
Query 418 TCCATCTCTTCTCTAAACCCTATATCTCCCTCGGTCACGGTCAACAACGTCTATTACCTA 477
||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 436 TCCATCTCTTCTCTAAAACCTATATCTCCTTCGGTCACGATCAACAACGTTTATTACCTA 495
Query 478 TGCAT-CCCCAAGCCGTTCCTCGTGGACTTCCCTCCCGGTGTTTTCGGCCTCGCGGGGCT 536
||||| |||||| |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 496 TGCATCCCCCAA-CCGTTCCTTGTAGACTTCCCTCCCGGTGTTTTCGGCCTTGCGGGGCT 554
Query 537 TGCACCCACCGCTCTCGCCACATGGAACCAGCTTACTCGACCTAGACTCGGACTCGAGAA 596
|||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 555 TGCACCTACGGCTCTCGCCACTTGGAACCAGCTGACTCGACCTAGACTCGGACTCGAGAA 614
Query 597 GAAGTTTGCGTTGTGTCTTCCTTCTGATGAAAGTCCTTTGAACAAAGGTGCTATTTACTT 656
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 615 GAAGTTTGCGTTGTGTCTTCCTTCTGATGAAAACCCTTTGAAAAAAGGTGCTATTTACTT 674
Query 657 TGGTGGAGGTCCGTACAAGCTCAGAAACATTGATGCAAGATCCATGCTCTCTTACACTCG 716
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 675 TGGTGGAGGTCCGTACAAGCTCAGAAACATTGATGCAAGATCTATGCTCTCTTACACTCG 734
Query 717 ATTGATTAGAAACCCTAGAAAACTCAACAACTATTTCTTGGGACTCAAGGGTATTTCCGT 776
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ATTGATTACAAACCCTAGAAAACTCAACAACTATTTCTTGGGACTCAAGGGTATTTCCGT 794
Query 777 TAACGGGAAAAGGATCTTGCTTGCACCAAACGCTTTTGATTTCGACCGCAACGGTGACGG 836
||||||||| ||||||||| |||| ||||||||||||| ||| |||||||||||||| ||
Sbjct 795 TAACGGGAATAGGATCTTGTTTGCCCCAAACGCTTTTGCTTTTGACCGCAACGGTGATGG 854
Query 837 AGGCGTGACTCTAAGCACCGTTTTCCCTTTCACTACGTTAAGAAGCGACATATACAAAGT 896
|||||| |||||||||||| | ||||||||||||| |||| ||||||||||||||| |||
Sbjct 855 AGGCGTTACTCTAAGCACCATATTCCCTTTCACTATGTTACGAAGCGACATATACAGAGT 914
Query 897 CTTTATTGAAGCATTCGCAAAAGCCACGTCGGATATTCCACGTGTCATTAGCACGACACC 956
|||||| ||||||||| || ||||||| |||| |||||||||||||| ||||||||||||
Sbjct 915 CTTTATCGAAGCATTCTCACAAGCCACATCGGGTATTCCACGTGTCAGTAGCACGACACC 974
Query 957 CTTGGAGTTTTGTCTTAAGTCAACGACAAATTTCCAAGTGCCTCGGATCGATCTAGAGCT 1016
||| |||||||||||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 975 CTTTGAGTTTTGTCTTTCGACGACGACAAATTTCCAAGTGCCTAGGATCGATCTAGAGCT 1034
Query 1017 AGCTGCTGGGGTGATTTGGAAAGTGTCTCCCGCAAACGCGATGAAGAAGGTCAGTGATGA 1076
|||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1035 AGCTAATGGTGTGATTTGGAAATTGTCTCCCGCAAACGCGATGAAGAAGGTCAGCGATGA 1094
Query 1077 CGTGGCTTGCTTGGCTTTCGTCAACGGAGGAGATGCGGCGGCGCAGGCGGTGGTGATCGG 1136
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1095 CGTGGCTTGCTTGGCTTTTGTCAACGGAGGAGATGCGGCGGCGCAGGCGGTGATGATAGG 1154
Query 1137 ATTACATCAGATGGAAAACACTTTGGTGGAGTTTGACGTTGGAAGATCTGCTTTTGGATT 1196
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1155 AATACATCAGATGGAAAATACTTTGGTGGAGTTTGACGTTGGAAGATCTGCTTTTGGATT 1214
Query 1197 TAGTTGTTCTTTGGGTTTGGTCAACGCTTCATGCGGTGACTTTCAAACACGGCCATGAGA 1256
||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1215 TAGTTCTTCTTTGGGTTTGGTCAGCGCTTCATGCGGCGACTTTCAAACACGGCCATGAGA 1274
Query 1257 ATGTCAAATTAAAGAACTTGATAGTTGACATTCTCTTGTGATTGAATATTTATTTGTTAG 1316
|||||||| | | | |||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1275 ATGTCAAA--ACA-A-CTTGATAGTTGACATTATCTTGTGATTGAATATTTATTTGTCAG 1330
Query 1317 TTAATCTGGCTTCATTTGTTATATAT-ATA-ATGTCGAGTGTGGTTTTATAATTTTTAGT 1374
| | |||||||||||||||||| || || ||||| |||||||||||| || ||||||
Sbjct 1331 T-ACTCTGGCTTCATTTGTTATGTAACATTCATGTCAAGTGTGGTTTTAAAAAATTTAGT 1389
Query 1375 CAATAACGAATGTCAAAGAATGTAATAAAACATTAAAGTTTT 1416
|||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1390 CAATGACGAATGTCAAAGAATGTAATAAAACACTAAAGTTTT 1431
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69778757550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5