BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494898
Length=1698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48440.1 | Symbols: | FAD-dependent oxidoreductase family p... 2333 0.0
> AT5G48440.1 | Symbols: | FAD-dependent oxidoreductase family
protein | chr5:19629658-19632639 REVERSE LENGTH=1705
Length=1705
Score = 2333 bits (1263), Expect = 0.0
Identities = 1570/1715 (92%), Gaps = 34/1715 (2%)
Strand=Plus/Plus
Query 1 GTTGACTTTTGAAAGTTCAAACCTTTACGATACCAAAAA-C--CTTCACCAATGGTTTCC 57
||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||
Sbjct 1 GTTGACTTTTGAAAGTTCAAACCTTTACGATACCAAAAACCTTCTTCTCCAATGGTTTCC 60
Query 58 ATTTTCCTTCAATCACCAACAAGTTTAACATCC-CAGAGCTACCCATTTTCATCTCGGAG 116
||||||||||||||||| || ||||||| || | ||||||||||||||||||||||||
Sbjct 61 ATTTTCCTTCAATCACCCACCTTTTTAACA-CCACTGAGCTACCCATTTTCATCTCGGAG 119
Query 117 CTCCACCCGGAGAACCCGACGTGGAGCTTCTCCATCACTTCGTGTCACAGCTTCTCGTAG 176
||||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 120 CTCCACCAAGAGAACCCAACATGGAGCTTCTCTGTCACTACGTGTCACAGCTTCTCGTAG 179
Query 177 CT-CTTACGATGTAGTCGTTGTTGGTGGTGGGATCATCGGATTGACCATAGCCCGCCAAT 235
|| ||| |||||| || ||||| |||||||||||||| || || ||||||||||||||||
Sbjct 180 CTCCTT-CGATGTTGTTGTTGTAGGTGGTGGGATCATTGGGTTAACCATAGCCCGCCAAT 238
Query 236 T-CTTAACCGGGTCGGATCTATCCGTTGCTGTTGTCGATAAAGCCGTCCCTTGCTCCGGC 294
| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 239 TCCTT-ACCGGGTCGGATCTATCTGTTGCTGTTGTCGATAAAGCCGTACCTTGCTCCGGC 297
Query 295 GCCACCGGTGCCGGGCAGGGATATATATGGATGACTCACAAGAAACCAGGCACTGATGTG 354
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 298 GCCACCGGTGCCGGGCAGGGATATATATGGATGACACACAAGAAACCAGGCAGTGATGTG 357
Query 355 TGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTGAAC-GT 413
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 358 TGGGACTTGACCTTGAGGAGCCATGAACTCTGGCACAAGCTTGCAGAGAGCTTG-ACTGA 416
Query 414 TGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTACTCATTGG 473
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 TGATGGTCTTGATCCTGAAGAGTTGCTTGGCTGGAAAAAGACAGGAAGCTTGCTCATTGG 476
Query 474 AAGGACCTCTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCACGAGCTTTCTGAAGCTGG 533
|||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 477 TAGGACCACTGAGGAATGTGTTGCTCTGAAGCAAAAGGTTCATGAGCTATCTGAAGCTGG 536
Query 534 GTTAAGAACTGAATATTTGTCTAGTGATGAGTTGTTGTTAAAGGAGCCTGCGGTTCTTGT 593
|||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct 537 GTTAAGAACTGAATATTTGTCTAGTGCTGAGTTGTTGTTAAAGGAGCCTGCGATACTTGT 596
Query 594 GGATGATAATTCCGGGGCTGCATTTCTTCCCGATGATTCACAACTGGATGCTCATCGCGC 653
|||||||| | || |||||||||||||| ||||||||||| |||| || ||||| ||
Sbjct 597 AAATGATAATACTGGTGCTGCATTTCTTCCTGATGATTCACAGTTGGACGCCCATCGTGC 656
Query 654 AGTTGCTTATATTGAGAAGGGTAACAGAGAGTTTGCACCTGAAGGAAGATATGCCGAGTT 713
||||||||||| ||||||||||| |||| ||||||| | | ||| ||||||||||||||
Sbjct 657 GGTTGCTTATATCGAGAAGGGTAATAGAGCGTTTGCAACAGCAGGCAGATATGCCGAGTT 716
Query 714 CTATCATGAACCAGTTACAGGTTTAATAAGGTCTGATGGGCG-TAGCGCGGAGGTTGCAG 772
|||| ||||||||||||||||||||||||||||||||||| | |||| || |||||| |
Sbjct 717 CTATAATGAACCAGTTACAGGTTTAATAAGGTCTGATGGG-GATAGCAAGGTGGTTGCTG 775
Query 773 GTGTTCAGACTTCT-AAACGTAACTTGTATGGTAAGAAGGCTACGATAGTAGCTGCTGGT 831
| ||| |||||| | ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 776 GCGTTAAGACTT-TGAAACGCAACTTGTATGGTAAGAAGGCTACTATAGTAGCTGCTGGT 834
Query 832 TGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTTCGCTGGACGTT 891
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 TGCTGGAGTGGATCTCTGATGCATGAATTGCTTAAAGACTGCAACATTCCGCTGGACGTT 894
Query 892 CCTGTGAAGCCAAGAAAGGGGCATCTACTTGTGGTAGAAAATTTTGATTCATTCCACTTA 951
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 895 CCGGTGAAGCCAAGAAAGGGGCATCTGCTTGTGGTAGAGAACTTTGATTCATTCCACTTA 954
Query 952 AATCAT-GGATTAATGGAGGCTGGTTACACAAATCATCAAAGTGCTTCAGCTCCAGGATT 1010
|||||| ||| ||||||||||||||||| | ||||||||||||||||||| | |||||||
Sbjct 955 AATCATGGGA-TAATGGAGGCTGGTTACTCGAATCATCAAAGTGCTTCAGTTTCAGGATT 1013
Query 1011 GGATGTCGAGGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAA 1070
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 GGATGTCGATGAACGGATGCTATCTATTTCCATGACAGCCACAATGGACACATCAGGAAA 1073
Query 1071 CCTTATCCTCGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTAT 1130
|||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CCTTGTTCTTGGGAGCAGCCGTGAGTTTGTCGGGTTCGACACTGAAGCTGATGAGTTTAT 1133
Query 1131 CATCCGTTGCATATGGGAGCGTGCAGCAGAATTCTTCCCCAAGTTACGTGATATTTCCCT 1190
|||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1134 CATCCGTTGCATATGGGAGCGTGCTGCAGAATTCTTTCCTAAGTTACGTGATATTTCCCT 1193
Query 1191 CGAAGATTTCATCCGGAACAGGAAAGTGAGAGTCGGGTTGCGTCCTTACATGCCTGATGG 1250
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1194 CGAAGATTTCATCCGTAACAGGAAAGTGAGAGTCGGGTTGCGCCCTTACATGCCTGACGG 1253
Query 1251 AAAGCCAGTGATAGGATCCGTGCCCGGACTACAAAACCTATACTTAGCAGCTGGGCATGA 1310
||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||
Sbjct 1254 GAAGCCAGTGATAGGATCCGTGCCCGGATTACAAAACATGTACTTAGCAGCTGGGCATGA 1313
Query 1311 AGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACAGACATGGTACTTGG 1370
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1314 AGGAGGTGGACTTTCCATGGCTCTAGCAACAGCGGAAATGGTAACGGACATGGTACTAGG 1373
Query 1371 GAAACC-TGAACAGGTGGATACCTCAGCGTTTGGGGTTAAAGGACGT--T-GTTGCTGAT 1426
||||| | | || |||||||| ||| |||||||||||||||| ||| | |||||||||
Sbjct 1374 AAAACCATCA-CAAGTGGATACTTCAACGTTTGGGGTTAAAGGGCGTCGTTGTTGCTGAT 1432
Query 1427 GAAATAGTAGCAGTTCGGTTTAGTTAAGAGACTGAATCTTCTTAAGCATTGTGGTTGCTA 1486
||||||| ||||||| ||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1433 GAAATAGAAGCAGTTTGGTTTAGTTAAGAGAGTGAATCCTCTTAAGCATTGTGGTTGCTA 1492
Query 1487 -AAT-GGTGTCCCAAAGGAAATTTCTATGAGCTACACAAATCCGGTGTTGGTTTAGTCCC 1544
|| || ||| ||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 1493 TAAACGGGGTCTTAAAGGAAATGTCTATGAGCTACATAAATCTAGTGTTGGTTTAGTCC- 1551
Query 1545 GGTTTTAGTAATATGTACTAAGACCAATTTTAATTCTACGTCTTGAAACCAGACTTTTTC 1604
|||||||||| || |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1552 GGTTTTAGTA-TA----CTAAGACCAATTCTAATTCTACGTCTTTAAACCAGACTTTTTC 1606
Query 1605 TCTAGCTTTCTACATGCGTTATATATTTTTTATATACGGTTGATTACAAATATGGTTCCA 1664
|||||||||| |||||| | || ||||||| | ||||||||||||||||||||| |||||
Sbjct 1607 TCTAGCTTTCGACATGCATGATCTATTTTT-A-ATACGGTTGATTACAAATATG-TTCCA 1663
Query 1665 TTCAAAATATACTCAA-CAATAAGTTAACCATTTA 1698
|||||||||| ||||| |||||| |||||||||||
Sbjct 1664 TTCAAAATATTCTCAAACAATAATTTAACCATTTA 1698
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83935311240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5