BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494908
Length=1406
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2148 0.0
> AT5G48470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19641744-19644362
FORWARD LENGTH=1495
Length=1495
Score = 2148 bits (1163), Expect = 0.0
Identities = 1330/1410 (94%), Gaps = 13/1410 (1%)
Strand=Plus/Plus
Query 1 TTCCTTTGCTTAAACCCAAAACCTCAAAAATTTTGAATCCGAAAGGAGAAATCAAACTAT 60
||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 9 TTCCTTTGCATAAACCCAAAACCTCAAACTTTTTGAATCCGAAACGAGAAAACAAACTAT 68
Query 61 GTTACAATCAATTCATCTTCCTTTTTCCTCCACACCATCACCTTCTCAAAGAGAATCTCT 120
|||||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 69 GTTACAGTCCATTCATCTTCGTTTTTCCTCCACACCATCACCTTCTAAAAGAGAATCTCT 128
Query 121 GATAATTCCATCGATTATTTGCTCATTTCCTTTCTCCTCTTCTTCGTTCCGTCCAAAACA 180
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 129 CATAATTCCATCGGTTATTTGCTCATTTCCTTTCACCTCTTCTTCGTTCCGTCCAAAGCA 188
Query 181 AACCCAGAAATTAAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGTGGTGGATA 240
|||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 189 AACCCAGAAACTGAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGAGGTGGATA 248
Query 241 TACCGATGAAGAATTGTTCGAAAGATACGGAACCCAGCAAAATCAAACTAATGTCGAAGA 300
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 249 CACCGATGAAGAATTGTTCGAAAGATACGGAACTCAGCAAAATCAAACTAATGTCAAAGA 308
Query 301 TAAGTTAAACCCATCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 360
||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TAAATTAGATCCAGCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 368
Query 361 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 428
Query 421 TGCTGTAGAATTGGCTGCACAGGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 429 TGCTGTAGAATTGGCTGCACAAGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 488
Query 481 GTTTATGATGGCTCTTGATTACATGATCCAACTCGCCGACAAAGACCAAGACGATAAGAG 540
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 489 GTTTATGATGGCTCTTGATTACATGATCCAACTTGCAGACAAAGACCAAGACGAGAAGAG 548
Query 541 AAAGTCTTTACTAGAGGTTGTCAAGGAGACTGTCTTATCTCATCTCACTAAAAAATGCCC 600
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 549 AAAGTCTTTACTAGAGGTCGTCAAGGAGACTGTCTTATCTCATCTCACCAAGAAATGCCC 608
Query 601 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCTAAAAAGGAAAGTAGACATGA 660
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 609 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCGAAAAAGGAAAGTAGACATGA 668
Query 661 GCTGCTGCGGAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 720
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 GCTTCTGCGTAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 728
Query 721 TCATATACCTGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 780
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 TCATATACCCGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 788
Query 781 TATGGAAACAAGGCCAGTTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 840
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TATGGAAACAAGGCCAGCTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 848
Query 841 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 908
Query 901 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAACCAAATTGGTTGCTCTCAAACCTGG 960
|||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||
Sbjct 909 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAGCCAAATTGGTAGCTTTGAAACCTGG 968
Query 961 AAAGACTGTGCAGCAAATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGTGCAGATGA 1020
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 969 AAAGACTGTGCAGCAGATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAA 1028
Query 1021 TCTTAGCAAAGAAGACGATTCTTCTACCCAAGGAA-AAAGACAAAGTGGGAT-AAATGGA 1078
|||||||||||||||||||||||||||| |||||| ||| || |||||| || |||||||
Sbjct 1029 TCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAA-ACCAAGTGG-ATTAAATGGA 1086
Query 1079 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAGACT 1138
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1087 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACT 1146
Query 1139 GTCACAAAGGTTCTGGGAAGTATATACTCAGGTAATGCCTCTGGTATAACAGCACAACAT 1198
||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1147 GTCACAAAGGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT 1206
Query 1199 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTCGAAGAAATCGCGTATTAGTAGTAT 1258
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1207 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTTGAAGAAATCGCTTATTAGTAATAT 1266
Query 1259 -TTACCTTGTCACATCAAGAGAGATTTGAAGGTAGAGATTGCGTCCTTGAA-TAATATAG 1316
|| |||| ||||||||| ||| | | |||||||||||||||||| ||| |||| | |
Sbjct 1267 CTT---TTGTTACATCAAGAAAGACTCGCAGGTAGAGATTGCGTCCT-GAAATAATCTTG 1322
Query 1317 TTCGGTATATATAATTGTAATTTGGTTGGTTGATATGACAAATAATGTCTCTCTACTATA 1376
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1323 ATCGGTATATA-ATTTGTAATTTGGTTGGTTGATATGACATATAATGTCTCTCTACTAAA 1381
Query 1377 TCCATACCATATCCATTAAAGCTCAAAAGT 1406
| || | | |||||||||| |||||||||
Sbjct 1382 -CTATGC-ACATCCATTAAACCTCAAAAGT 1409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69276752100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5