BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494908 Length=1406 Score E Sequences producing significant alignments: (Bits) Value AT5G48470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2148 0.0 > AT5G48470.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:19641744-19644362 FORWARD LENGTH=1495 Length=1495 Score = 2148 bits (1163), Expect = 0.0 Identities = 1330/1410 (94%), Gaps = 13/1410 (1%) Strand=Plus/Plus Query 1 TTCCTTTGCTTAAACCCAAAACCTCAAAAATTTTGAATCCGAAAGGAGAAATCAAACTAT 60 ||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 9 TTCCTTTGCATAAACCCAAAACCTCAAACTTTTTGAATCCGAAACGAGAAAACAAACTAT 68 Query 61 GTTACAATCAATTCATCTTCCTTTTTCCTCCACACCATCACCTTCTCAAAGAGAATCTCT 120 |||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 69 GTTACAGTCCATTCATCTTCGTTTTTCCTCCACACCATCACCTTCTAAAAGAGAATCTCT 128 Query 121 GATAATTCCATCGATTATTTGCTCATTTCCTTTCTCCTCTTCTTCGTTCCGTCCAAAACA 180 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || Sbjct 129 CATAATTCCATCGGTTATTTGCTCATTTCCTTTCACCTCTTCTTCGTTCCGTCCAAAGCA 188 Query 181 AACCCAGAAATTAAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGTGGTGGATA 240 |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 189 AACCCAGAAACTGAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGAGGTGGATA 248 Query 241 TACCGATGAAGAATTGTTCGAAAGATACGGAACCCAGCAAAATCAAACTAATGTCGAAGA 300 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 249 CACCGATGAAGAATTGTTCGAAAGATACGGAACTCAGCAAAATCAAACTAATGTCAAAGA 308 Query 301 TAAGTTAAACCCATCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 360 ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 TAAATTAGATCCAGCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 368 Query 361 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 428 Query 421 TGCTGTAGAATTGGCTGCACAGGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 480 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 429 TGCTGTAGAATTGGCTGCACAAGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 488 Query 481 GTTTATGATGGCTCTTGATTACATGATCCAACTCGCCGACAAAGACCAAGACGATAAGAG 540 ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 489 GTTTATGATGGCTCTTGATTACATGATCCAACTTGCAGACAAAGACCAAGACGAGAAGAG 548 Query 541 AAAGTCTTTACTAGAGGTTGTCAAGGAGACTGTCTTATCTCATCTCACTAAAAAATGCCC 600 |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 549 AAAGTCTTTACTAGAGGTCGTCAAGGAGACTGTCTTATCTCATCTCACCAAGAAATGCCC 608 Query 601 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCTAAAAAGGAAAGTAGACATGA 660 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 609 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCGAAAAAGGAAAGTAGACATGA 668 Query 661 GCTGCTGCGGAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 720 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 669 GCTTCTGCGTAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 728 Query 721 TCATATACCTGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 780 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 TCATATACCCGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 788 Query 781 TATGGAAACAAGGCCAGTTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 840 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 789 TATGGAAACAAGGCCAGCTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 848 Query 841 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 908 Query 901 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAACCAAATTGGTTGCTCTCAAACCTGG 960 |||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||| Sbjct 909 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAGCCAAATTGGTAGCTTTGAAACCTGG 968 Query 961 AAAGACTGTGCAGCAAATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGTGCAGATGA 1020 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | Sbjct 969 AAAGACTGTGCAGCAGATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAA 1028 Query 1021 TCTTAGCAAAGAAGACGATTCTTCTACCCAAGGAA-AAAGACAAAGTGGGAT-AAATGGA 1078 |||||||||||||||||||||||||||| |||||| ||| || |||||| || ||||||| Sbjct 1029 TCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAA-ACCAAGTGG-ATTAAATGGA 1086 Query 1079 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAGACT 1138 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1087 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACT 1146 Query 1139 GTCACAAAGGTTCTGGGAAGTATATACTCAGGTAATGCCTCTGGTATAACAGCACAACAT 1198 ||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 1147 GTCACAAAGGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT 1206 Query 1199 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTCGAAGAAATCGCGTATTAGTAGTAT 1258 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 1207 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTTGAAGAAATCGCTTATTAGTAATAT 1266 Query 1259 -TTACCTTGTCACATCAAGAGAGATTTGAAGGTAGAGATTGCGTCCTTGAA-TAATATAG 1316 || |||| ||||||||| ||| | | |||||||||||||||||| ||| |||| | | Sbjct 1267 CTT---TTGTTACATCAAGAAAGACTCGCAGGTAGAGATTGCGTCCT-GAAATAATCTTG 1322 Query 1317 TTCGGTATATATAATTGTAATTTGGTTGGTTGATATGACAAATAATGTCTCTCTACTATA 1376 |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1323 ATCGGTATATA-ATTTGTAATTTGGTTGGTTGATATGACATATAATGTCTCTCTACTAAA 1381 Query 1377 TCCATACCATATCCATTAAAGCTCAAAAGT 1406 | || | | |||||||||| ||||||||| Sbjct 1382 -CTATGC-ACATCCATTAAACCTCAAAAGT 1409 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69276752100 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5