BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494910

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G48490.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer...   518    2e-146


> AT5G48490.1 | Symbols:  | Bifunctional inhibitor/lipid-transfer 
protein/seed storage 2S albumin superfamily protein | chr5:19647835-19648281 
REVERSE LENGTH=447
Length=447

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 331/356 (93%), Gaps = 2/356 (1%)
 Strand=Plus/Plus

Query  1    AACACCACAAACACAACTAATATATAAAAAATAAAGAGGATAAAATGACAAGCAAGAATA  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  
Sbjct  1    AACACCACAAACACAACAAATATATAAAAAATAAAGAGGATAAAATGACAAGCAAGAAGG  60

Query  61   TGGCTATTATGGTGATTGTAATGGTGATGGCTAGTTTAGTCATCGAGAGGTCAGTGGCGA  120
            |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  61   TGGCAATTATGGTGATTGTAATGGTGATGGCTAGTTTAGTCGTTGAGAGGTCAGTGGCGA  120

Query  121  TTGACCTTTGTGGCATGACTCAAGCTGAGTTAAATGAGTGCTTACCAGCGGTGAGCAAGA  180
            |||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct  121  TTGACCTTTGTGGCATGACTCAGGCAGAGTTGAATGAATGCTTACCAGCGGTGAGCAAGA  180

Query  181  ATAACCCAAAGAGCCCATC-ACAGCTTTGTTGCAACGCTCTAAAACATGCTGACTACACT  239
            ||||||| | |||||||||   | |||||||| |||||||| ||||||||||||||||||
Sbjct  181  ATAACCCGACGAGCCCATCGTTA-CTTTGTTGTAACGCTCTGAAACATGCTGACTACACT  239

Query  240  TGTCTTTGTGGCTACAAAAACTCTCCGTGGCTCGGTTCTTTCGGTGTAGATCCCAAGCTC  299
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  240  TGTCTTTGTGGCTACAAAAACTCTCCGTGGCTCGGTTCTTTTGGTGTAGATCCCAAGCTC  299

Query  300  GCTTCCGGTCTCCCTAAAGAATGTGACCTAGCCAATGCCCCAGCTTGTTAAGCATT  355
            |||||  ||||||||||||| ||||||||| |||| |||||| |||||||||||||
Sbjct  300  GCTTCTAGTCTCCCTAAAGAGTGTGACCTAACCAACGCCCCAACTTGTTAAGCATT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16940231413


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5