BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494911
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48500.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1310 0.0
> AT5G48500.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G10930.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:19652991-19654244 FORWARD LENGTH=975
Length=975
Score = 1310 bits (709), Expect = 0.0
Identities = 889/970 (92%), Gaps = 36/970 (4%)
Strand=Plus/Plus
Query 1 ACCCTACACTATATTTTTGAAAACACCACTCTATGCTCAGAG----ACA------CAC-A 49
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 1 ACCCTACACTATATTTTTGAAAACACCACTCTATGCTCAGAGACACACAGTCCCTCACTA 60
Query 50 -----TCTCTATCTCCTACAAGTAGACTTTAAGACAACTTTTGTCTCAGTGTTGAGTAAT 104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTTTCTCTATCTCCTACAAGTAGACTTTAAGACAACTTTTGTCTCAGTGTTGAGTAAT 120
Query 105 GTAAAATACCCATCTGGTCATTTAATAAACACA-AtctctttctctctctcattctctAT 163
|||||||||||||||||| ||||| || || | |||||| ||| |||||| ||||||||
Sbjct 121 GTAAAATACCCATCTGGTTATTTATTACGCATAGATCTCTCTCT-TCTCTCTTTCTCTAT 179
Query 164 TTAGATAACTTAAAGCAGAGAGATCC-ATACATCATCAATCAAACACATT--CATC-ACT 219
|||||| ||||||||||||||| ||| | |||||||||||||||| |||| || | |||
Sbjct 180 TTAGATTACTTAAAGCAGAGAGGTCCGA-ACATCATCAATCAAACCCATTCACAACTACT 238
Query 220 ACTACAATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACACGTACCAGCT 279
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 239 ACGACAATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACACGTGCCAGCT 298
Query 280 TTTGGAAGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAGACAGCAACT 339
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTTGGAAGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAGACAGCAACA 358
Query 340 ACTCAACAACCTGCTTTTCTTCACTACGCTCCTTACCCTCAAGATCGTGATCTTTACCTC 399
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 359 ACTCAACAACCAGCTTTTCTTCACTATGCTTCTTACCCTCAAGATCGTGATCTTTACCTC 418
Query 400 GCCGGAGATCTCTACGATAATCACCACCTTGTAGCTCCCGCCGTCATCATCGTCCCTCGT 459
||||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct 419 GCCGGTGATCTCTACGACAACCACCACCTTGTAGCTCCGGCCGTTATCATTGTCCCTCGT 478
Query 460 CGCCGGGCTAAAGTGGGTCAAGAACCGGTGGAAAAGAAGAGAAATGTCTCCAAGGAG-AA 518
|||||||||||||||||||||||||| | ||| |||||||||||||| || ||| || ||
Sbjct 479 CGCCGGGCTAAAGTGGGTCAAGAACCAGCGGAGAAGAAGAGAAATGTGTCGAAGCAGCAA 538
Query 519 CCACAACTATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCAACACCGGT 578
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 -CACAACTATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCAACACCGGT 597
Query 579 GGTGAAGCGGAGGATGAAGGCGCCAAAGCCTGTGGATGAAGACTTGTACAAAGTCTCCCC 638
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 598 TGTGAAGCGGAGGATGAAGGCACCAAAGCCTGTGGATGAAGACTTGTACAAAGTTTCCCC 657
Query 639 ACAACTTCTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGATTTGGGTGCATTTC 698
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 658 ACAACTTCTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGGTTTGGGTGCATTTC 717
Query 699 AAGGTGTTTTTTGCCAACACGGGTGCTTTGAAGAAACAAGCGTGAGAGACTTGAGTCAGA 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 AAGGTGTTTTTTGCCAACACGGGTGCTTTGAAGAAACAAGCGTGAGAGACTTGAGTCAGA 777
Query 759 ACTACACTTTGTTTTTCTTTTTCTCTTCTTTATCTAATCCTATTATATATATCAAAAGAC 818
| ||||||||||||| |||| || |||||| ||||||||||||||||||||||||||||
Sbjct 778 AGAACACTTTGTTTTT-TTTT-CTTTTCTTTTTCTAATCCTATTATATATATCAAAAGAC 835
Query 819 TATGCTTGTGAGAGTATTATGTATGTATTTATTTATGCGTAGGaaaaaaaGAAGATGAAT 878
||||||||||||||||| |||| ||| | |||||||||||||||| |||||||||
Sbjct 836 TATGCTTGTGAGAGTAT---GTATTTATG-A---ATGCGTAGGAAAAAAA-AAGATGAAT 887
Query 879 TTCTAAAAGATACTAGACCAATGTAGCTTTTGGGAAAAGCTTAGCCATATTGTATTAATT 938
|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 888 G-CTAAAAGATAGTAGACCAATGTAGCTTTTGCGAAAAGCTTAGCCATATTATATTAACT 946
Query 939 AAACTAAAAA 948
|||||| |||
Sbjct 947 AAACTATAAA 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5