BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494915
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01760.1 | Symbols: | ENTH/VHS/GAT family protein | chr5:29... 2158 0.0
> AT5G01760.1 | Symbols: | ENTH/VHS/GAT family protein | chr5:291712-294304
FORWARD LENGTH=1847
Length=1847
Score = 2158 bits (1168), Expect = 0.0
Identities = 1523/1686 (90%), Gaps = 57/1686 (3%)
Strand=Plus/Plus
Query 1 CTTGTGGAATAAAGGTATTTTTAGACGAGAATTTCAGTGGAATTCAGAAATGAGGCCATC 60
||||||||||||||| | |||| |||||||||||| | | | ||| |||||||| ||
Sbjct 1 CTTGTGGAATAAAGGCA-TTTTCGACGAGAATTTC--T-G---T-AGAGATGAGGCCTTC 52
Query 61 -T-T-CTTCTTCTTCCTCATCCTCTGCTTCTCCTTCGTTTACGCTGTCTTCAGTGACAGT 117
| | ||||||| ||||| |||||||||||||||||||| | ||| || |||||||||||
Sbjct 53 TTGTGCTTCTTCCTCCTCCTCCTCTGCTTCTCCTTCGTTGAGGCTATCGTCAGTGACAGT 112
Query 118 GGCGGTGGACAAAGCCACAAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGC 177
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 113 GGCGGTGGACAAAGCCACGAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGC 172
Query 178 CATCTGCGATTCCCTCAATTCTAATCGCTGGCAATGCAAAGATGCTATCAAAGCCGTGAA 237
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 173 CATCTGCGATTCTCTCAATTCTAATCGCTGGCAATGCAAAGATGCCATCAAAGCCGTGAA 232
Query 238 GAGAAGATTGCAACACAAGAGTTCTAAAGTGCAATTACTCACTTTAACGTTGTTGGAGGC 297
|||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 233 GAGAAGATTGCAGCACAAGAGTTCTAGAGTTCAATTACTCACTTTAACGTTGTTGGAGGC 292
Query 298 AATGCTGAAAAATTGTGGTGACTTTGTTCATTCTCATATCACTGAGAAACATCTTCTTGA 357
||||||||| || || ||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 293 AATGCTGAAGAACTGCGGTGACTTTGTGCATTCTCATATCGCTGAGAAACATCTTCTTGA 352
Query 358 AGATCTGGTTAAGATTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACAGAA-TCTTGC 416
|||| |||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 353 AGATATGGTTAAGCTTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACA-AACTCTTGA 411
Query 417 TATTGTTGGATACATGGAATGAAGCATTCGGTGGAGTTCCTTGTAAATACCCCCACTACA 476
| ||||||||||||||||||||||||||| |||||||| |||| ||| |||| |||||||
Sbjct 412 TTTTGTTGGATACATGGAATGAAGCATTCAGTGGAGTTGCTTGCAAACACCCTCACTACA 471
Query 477 ATTGGGCATACCAAGAGCTTAAACGGTGTGGGGTGACATTCCCACAACGTTCCAAAGAAG 536
| ||||||||||||||||||||||||||||| |||| ||| ||||||||||| |||||||
Sbjct 472 ACTGGGCATACCAAGAGCTTAAACGGTGTGGTGTGAAATTTCCACAACGTTCGAAAGAAG 531
Query 537 CACCCATGATGCTTGCACCACCACCTCCAATGACACAttcttcttcttcttcttcatctt 596
||||| ||||||||| ||||||||||||| ||||||| |||||||| | || | ||||
Sbjct 532 CACCCCTGATGCTTGAACCACCACCTCCAGTGACACAGTCTTCTTC--C-TC-T--TCTT 585
Query 597 ctATGAATTTACTGTCCATTGGTTCATTTAGAAGGCTCGACGAAGCTATGGCTACAGAAA 656
||||||||||| |||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 586 CTATGAATTTAATGTCCATTGGCTCATTTAGAAGGCTTGACGAAACTATGGCTACAGAAA 645
Query 657 TTGAGGGCCTAAGCTTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATG 716
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 TTGAGAGCTTAAGCTTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATG 705
Query 717 ACATGGTTCAAGCCGTGAATCCATCTGATAAATCAGC-TATAAATGATGAGCTAATAGTT 775
|||||||||||||||| ||||| |||||||||||||| | |||| |||||||||||||||
Sbjct 706 ACATGGTTCAAGCCGTTAATCCTTCTGATAAATCAGCCT-TAAAAGATGAGCTAATAGTT 764
Query 776 GATCTAGTAGAGCAGTCCAGATCTAATCAAAAGAAACTAATCCAGATGCTCACTACAACT 835
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 765 GATCTAGTAGAGCAGTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACT 824
Query 836 GCTGATGAGGATGTTATGGCACGTGGGCTCGAGCTGAATGACTCTTTACAGGTAGTGCTC 895
|| || ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 825 GCGGACGAGGATGTTCTGGCACGTGGTCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTC 884
Query 896 GCGAGACATGACGCTATTGCATCTGGTGTATCTCTTCCTATGTTG--G-AGGCCCCAGAG 952
|| ||||| ||||||||||| ||||| || ||||||||| ||||| | |||||||||||
Sbjct 885 GCTAGACACGACGCTATTGCCTCTGGCGTCTCTCTTCCTTTGTTGTTGCAGGCCCCAGAG 944
Query 953 --A-------CAAGCTCTGCCCTCAAGACTTATGATGCAGCTGCTCTTGAGTCTG---AC 1000
| |||||||| |||||||||||| || ||| |||||||||||||||| ||
Sbjct 945 CCAAGAGAGACAAGCTCTTCCCTCAAGACTTGTGGTGCTGCTGCTCTTGAGTCTGCTGAC 1004
Query 1001 TCTGAGTCTTCTTCATCGTC---GAGCAGTGAAAGTGAAACAGATGAAGGGGAGGATATT 1057
||||||||||||||||| || |||||||||||||||||||||||||| ||||||| ||
Sbjct 1005 TCTGAGTCTTCTTCATCATCATCGAGCAGTGAAAGTGAAACAGATGAAGTGGAGGATGTT 1064
Query 1058 AAAGATGACTTTATGCAGTTAGCCAGAAGGCACGCTCTATTAAGTGCCGAACACAGCGAT 1117
|||||||||||||| ||| |||||| |||||| |||||||||| |||| ||||||||||
Sbjct 1065 AAAGATGACTTTATACAGCTAGCCAAAAGGCATGCTCTATTAAATGCCCTACACAGCGAT 1124
Query 1118 GAAGAAGAAGAAACATTGCTTCTACGCAATGACAATGAAAAAATAGCGGAAACAGAAGCC 1177
|||||||||||||||||||||||| |||| ||||||||||||| ||| ||| ||||||||
Sbjct 1125 GAAGAAGAAGAAACATTGCTTCTAGGCAACGACAATGAAAAAACAGCAGAAGCAGAAGCC 1184
Query 1178 AAGACACAGTGCAAAAATCTAGCTTTGTTCGACACAACAACAACAACCACCACCGAGTCA 1237
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1185 AAGACACAGTGCAAAGATCTAGCTTTGTTCGACACAACAACAACAACAACCACCAAGTCA 1244
Query 1238 GAGCAGGACATTATAGAACTTCTCAGCCTAACTCTGTCAACGACTGCTCTACCGTCCCCA 1297
|||||||| ||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1245 GAGCAGGATATTATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTGCCCTCCCCA 1304
Query 1298 CAAACGCAACCTCAAATGCAACCACAAACGCAGCCTCCATCGTTTTTTGCTGATGATAAT 1357
||||||||||| || | | | || ||| || | ||||||||||||||||||||||
Sbjct 1305 CAAACGCAACCGCA---G-A-CG-CA---GCA-CC-C-ATCGTTTTTTGCTGATGATAAT 1352
Query 1358 ATTCTTATGAACAACTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCGCAAGTCCCA 1417
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1353 ATTCTTATGAACAGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCACAAGTCCCA 1412
Query 1418 AAAATGACTCAGTTTGCACCATCGAG-ACCTCAGTTTCAGCCATGGCCTCTACAGCAGCA 1476
||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||||||
Sbjct 1413 AAAATGACTCAGTTTGCTCCATC-AGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCA 1471
Query 1477 ACAACCGTTTTCATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAATAGTAA 1536
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1472 ACAACCGTATTCATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAACAGTAA 1531
Query 1537 TGACACAACATTGTGGAGCCAAGGAGGCAATGAGAATAAGGTCTTTGAGAGAAACTTGCA 1596
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1532 TGACACAACATTCTGGAGCCAAGGAGGCAATGAGAATATGGTCTTTGAGAGAAACTTGCA 1591
Query 1597 A-TACTTAAACTCCTTCCCCGCTAGAGCCACGGGGACATCCGGTGCTGCCT-CTGTGCCT 1654
| | || |||||| || || |||||||||||||| |||||||||||||| | ||| | ||
Sbjct 1592 AGT-CTCAAACTCATTTCCTGCTAGAGCCACGGGCACATCCGGTGCTGC-TACTGCGGCT 1649
Query 1655 ACGGTG 1660
|| |||
Sbjct 1650 ACAGTG 1655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5