BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494916
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48540.1 | Symbols: | receptor-like protein kinase-related ... 1454 0.0
> AT5G48540.1 | Symbols: | receptor-like protein kinase-related
family protein | chr5:19668964-19669920 REVERSE LENGTH=957
Length=957
Score = 1454 bits (787), Expect = 0.0
Identities = 881/927 (95%), Gaps = 4/927 (0%)
Strand=Plus/Plus
Query 1 TAATGAAGACATTAATTGTGAAATGTTCCCTTCTATTGGCTCTTGTATGTAGCTGCAAAG 60
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 32 TAATGAAGACATTAGTTGTGAAATGTTTCCTTCTATTGGCTCTTGTATGTAGCTGCAGAG 91
Query 61 CAGCAGATTCAATATGGCAACTCTGCAACACAAACTCAAACATCTCAGCAAGCAGCCAAG 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 92 CAGCAGATTCAATATGGCAACTCTGCAACACAAATTCAAACATCTCAGCAAGCAGCCAAG 151
Query 121 TCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCACAAGGTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 152 TCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCAAAAGGTT 211
Query 181 TCGTGACCACAACTTCTCCAAGTTACAACAAAAAAGAGAAAGTGTATGGACTTGCTCAAT 240
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 212 TCAAGACCACAACTTCTTCAAGTTACAACAACAAAGAGAAAGTGTATGGACTTGCTCAAT 271
Query 241 GTAGAGGAGATATCAGCAAGACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAA 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 272 GTAGAGGAGATATCAGCAATACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAA 331
Query 301 TCCGTGAAGTATGTCCGAACCAATCTGACTCAAGGATCTTGTACGATTTCTGCTTCTTAC 360
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 332 TCCGTGAAGTGTGTCAGAACCAATCCGACTCAAGGATCTTGTACGATTTCTGCTTCTTAC 391
Query 361 GTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCA 451
Query 421 ACGTCGCTAACGTAACCGAAA-CTGACCCCAAAACGTTTGACAATGAGCTTGGGGCACTC 479
||||||||||||||||||||| | |||||||||| ||| || |||||||| |||||||||
Sbjct 452 ACGTCGCTAACGTAACCGAAATC-GACCCCAAAAAGTTCGATAATGAGCTCGGGGCACTC 510
Query 480 TTTGACAAAATTAGGTCTGAGGCGGTTTTGCCTAAGAGTAAAGGTTTAGGTAAAGGTAAG 539
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 511 TTTGACAAAATTAGGTCTGAGGCTGTTTTACCTAAGAATAAAGGTTTAGGTAAAGGTAAG 570
Query 540 ACAAAACTGACACCTTTTGTGACACTAAACGGTTTGGTTCAATGCACAAGGGACTTAAGC 599
|||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 571 ACAAAATTGACACCTTTTGTGACACTAAACGGTTTGGTCCAATGCACGAGAGACTTAAGC 630
Query 600 GCTTTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCAC 659
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 GAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCAC 690
Query 660 AACAAGAAGGGATGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCG 719
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 AACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCG 750
Query 720 TTTTATTTCCCTCTTGATCCGGCTAAAACTGGTCCTAGTGTTGGTAGAATTTCTTCCGTT 779
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 751 TTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAATTTCTTCCGTT 810
Query 780 CGTCTCTCTCCGTAATCACAAAGTCTAATAAAAGAGTAAGTTTGACTCTAAAGAGTATAT 839
| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 811 CATCTCTCTCCGTAATCGCATAGTCTAATAAAAGAGTAAGTTTGTTTCTAAAGAGTATAT 870
Query 840 GTATATGTGTGCAAAATAAGGCTCTCTCCTTTTGTTTCTT-CTTTAAGATGTAAG-CAAT 897
||||||||||||||||||||||||| | ||| |||||||| |||||||||| ||| ||||
Sbjct 871 GTATATGTGTGCAAAATAAGGCTCTTTGCTTATGTTTCTTTCTTTAAGATGCAAGACAAT 930
Query 898 TAAGTTGCCAAGTTATTTGTGTTCTAG 924
||||| ||||||||||| ||||||||
Sbjct 931 TAAGTAACCAAGTTATTTATGTTCTAG 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5