BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494917
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48545.1 | Symbols: HINT3 | histidine triad nucleotide-bindi... 1232 0.0
> AT5G48545.1 | Symbols: HINT3 | histidine triad nucleotide-binding
3 | chr5:19676117-19678109 FORWARD LENGTH=869
Length=869
Score = 1232 bits (667), Expect = 0.0
Identities = 755/797 (95%), Gaps = 8/797 (1%)
Strand=Plus/Plus
Query 43 AATTCATTATTTGCTGGATTCGG--AATAATAATTGAATTCAGAAAATGGAAGCTAGAAG 100
||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 66 AATTCATTATTTGCTCGATTCGGAAAATCGTAATTGAATTCAGATAATGGAAGCTAGAAG 125
Query 101 GCTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGAT 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 126 ACTCGCGATCCTCTGTTCTCACCTGAACCCACCTGGTCCGAACCCGACCCGAGACCCGAC 185
Query 161 TCTCAGGGTTTCCGATTGTAGTAGCTCAGCTTCTTCCGGCGACGGGAAAGTGGAATCATC 220
||||||||| ||||| | | ||||||| | ||||||||||||||||||||||||||||||
Sbjct 186 TCTCAGGGTCTCCGA-T-T-GTAGCTCTGGTTCTTCCGGCGACGGGAAAGTGGAATCATC 242
Query 221 CAATCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAA 280
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TACTCTCCAAAACGACTGCGTTTTCTGCAAGATTATCCGTGGCGAGTCTCCATGTCTCAA 302
Query 281 GTTGTACGAGGATGATATGTGTTTGTGTATTTTGGATACTAATCCACTAAGCCATGGGCA 340
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 303 GTTGTACGAGGATGATATGTGTTTGTGTATTCTGGATACTAATCCACTAAGTCATGGGCA 362
Query 341 CTCTCTTATCATTCCCAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGT 400
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CTCTCTTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAGTTGT 422
Query 401 TGCTGCCATGTGTTCTAAAGTGCCGCTTATCAGCAACGCCATCGTGAAAGCTACCGGTAG 460
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 423 TGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGAAAGCTACCGGGAG 482
Query 461 TGATTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGGCAAGTCATATTTCACAC 520
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 483 TGACTCATTTAACTTATTGGTTAACAACGGCGCAGCAGCTGGACAAGTCATATTTCACAC 542
Query 521 ACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACG 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 ACACATTCACATAATCCCGCGTAAGGAACGTGACTGCTTATGGGCTTCCGAGAGCTTACG 602
Query 581 GAGACACACTCTGAAACTTGACAAGGAAGCATCTCAATTGGTATCGCGTGTTCGACAACA 640
||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| |||
Sbjct 603 GAGACACTCTCTGAAACTTGACAAGGAAGCATCTCAACTGGTATCGTGTGTTCGACGACA 662
Query 641 ATTGTGCAACCTTCCTGAAGAACAAATGGTTCAACCCTCATAAAAGTCCCTTCTCAAGAA 700
||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 663 CTTGTGCAGCCTTCCTGAAGAACAACTGGTTCAACCCTCGTAAAAGTCCCTTCTCAAGAA 722
Query 701 ACCCATTGTTGAAACTTTAGATACAGAATCCAAACCCAAAAGTATATTCTGTATAGTTCA 760
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 723 ACCCATTGTTGTAACTTTAGATACAGAATCCAAACCCAAA-GTATATTCTGTATAGTTCA 781
Query 761 TATTCAGTCTCAGTTTCATTT-ATATATATTCTTGAATCTTTGTTATTTTATCAAGATTT 819
|||||||||||| ||| |||| || || |||||||||||| ||||| |||||||||||||
Sbjct 782 TATTCAGTCTCA-TTTGATTTCATCTAAATTCTTGAATCTCTGTTACTTTATCAAGATTT 840
Query 820 AGTGATAGAAGTAGAAG 836
||||||| |||||||||
Sbjct 841 AGTGATACAAGTAGAAG 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40739893217
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5