BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494918
Length=1851
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 2689 0.0
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 73.1 9e-12
> AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684006-19687151 FORWARD
LENGTH=1931
Length=1931
Score = 2689 bits (1456), Expect = 0.0
Identities = 1770/1908 (93%), Gaps = 75/1908 (4%)
Strand=Plus/Plus
Query 1 CCCTTACCATTTACGTTCTCTTCTTTCTCCTCCGACACACTCCAAAACTCA-GAATCTCT 59
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 CCCTTACTATTTACGTTCTCTTCTTTCTCCTCCGACACACTCCAAAACTCATAAATCTAT 60
Query 60 CTGATGTGAATTTGACTAACTCTTTCG----T-A--A--TT--TA-GGATC-TT-ACT-A 104
|||||| |||||||||||||||||||| | | | || || ||| || ||| |
Sbjct 61 CTGATGCGAATTTGACTAACTCTTTCGTAATTCAGGATCTTACTACAAATCTTTAACTCA 120
Query 105 -CAA----------A-TCAAAGAATT-GAGAGAAAATGGACAACGAGTTGTTTATGAACA 151
||| | |||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 121 CCAATCTTCTTCTTATTCAAAG-ATTAGAGAGAAAATGGACAACGAGCTGTTTATGAACA 179
Query 152 CAGAGTTTCCACCACCGCCGGAGATGGCGACGCATTTCGAACCACC-ACCGTCTTCTTCA 210
||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 180 CAGAGTTTCCACCACCGCCGGAGATGGCGACGCATTTCGAA-CACCAACAGTCTTCTTCA 238
Query 211 TCGGCGATGATGCTTAACTGGGCTTTAATGGATCCAAATCCACCTCAAGATTCTTCCTTT 270
||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 239 TCGGCCATGATGCTTAATTGGGCTTTAATGGATCCAAATCCGCATCAAGATTCTTCCTTT 298
Query 271 ATATGGGAAAAGTCAACGGaacaacaacaacaacaaAGCATCTTTGACTCTGCTTTAAGC 330
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TTATGGGAAAAGTCAACGGAACAACAACAACAACAAAGCATCTTTGACTCTGCTTTAAGC 358
Query 331 TCATTAGTCTCATCACCGACACCGTCAAATTCCAACTTCTCCGGTGGTGGCGGTGATGGT 390
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 359 TCATTAGTCTCATCACCGACGCCGTCAAATTCCAACTTCTCCGGCGGTGGCGGTGACGGT 418
Query 391 TTTCTTATCAGAGAACTCATCGGAAAGCTTGGAAACATCGGGAATAACAATAACAACTCC 450
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 419 TTTCTCATCAGAGAACTCATCGGAAAGCTTGGAAACATCGGTAATAATAATAACAACTCC 478
Query 451 GGTGAGATCTACGGAACTCCGATGTCTCGCTCTGCCTCATGTTACGCAACTCCGATGAGC 510
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 479 GGTGAGATCTACGGAACTCCGATGTCTCGCTCCGCCTCATGTTACGCAACTCCGATGAGC 538
Query 511 TCTCCACCACCACCGACGAATACGAATTCTCAGATGATGATGAACAGAACGACGCCGTTG 570
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCTCCACCGCCACCGACGAATTCGAATTCTCAGATGATGATGAACAGAACGACGCCGTTG 598
Query 571 ACGGAATTCTCAGCAGATCCGGGTTTTGCGGAGAGAGCTTCAAGATTCTCTTGTTTTGGT 630
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 599 ACGGAATTCTCAGCAGATCCGGGTTTTGCGGAGAGAGCAGCTAGATTCTCTTGTTTTGGT 658
Query 631 AGCCGGAGCTTTAACGGAAGAACCAATACAAATCTTCCGATAAACAACGGTAATAACATC 690
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 659 AGTCGGAGCTTTAACGGAAGAACCAATACAAATCTTCCGATTAACAACGGTAATAACATG 718
Query 691 GTTAACAACTCTGGGAAGCTGACACGTGTCTCAAGCACACCAGCTCTTAAGGCTCTTGTT 750
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 719 GTCAACAACTCCGGGAAGCTGACACGTGTCTCCAGCACACCAGCTCTTAAGGCTCTTGTT 778
Query 751 TCACCGGAAGTCGCACCCGGCGGCGAATTTCCCCGGAAGAGAAAATCTGTGCCCAAAGGG 810
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 779 TCACCGGAAGTCACACCCGGCGGCGAATTTTCCCGGAAGAGAAAATCTGTGCCTAAAGGA 838
Query 811 AAATCCAAAGAAAATCCCATTTCCACTGCTTCTCCATCTCCTACTTTCTCaaagacggcg 870
|||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||
Sbjct 839 AAATCCAAAGAAAACCCCATTTCTACAGCTTCTCCATCTCCTAGTTTCTCAAAGACGGC- 897
Query 871 gaaaagaaagaagaatggggtgg-aaa--aggaagtaaaagtttagaagaaaaaggagga 927
| | || |||||| ||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 898 G----G-AA-AAGAAT--GGTGGAAAAGGAGGAAGTAAAAGTTCAGAAGAAAAAGGAGGA 949
Query 928 aaaaggagaagagaagatg-a-a-gat---gaagaagaaggagaaggtgaa-gg----aa 976
||||||||||||||||| | | | ||| ||||||||||||||||||||| || ||
Sbjct 950 AAAAGGAGAAGAGAAGAAGAAGATGATGAAGAAGAAGAAGGAGAAGGTGAAGGGAACAAA 1009
Query 977 a-CAATAACACAAAACCACCTGAGCCTCCTAAAGATTACATTCATGTTCGAGCTCGACGA 1035
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 AGCAATAACACAAAACCACCTGAGCCTCCTAAAGATTACATTCATGTTCGAGCTCGACGA 1069
Query 1036 GGCCAAGCGACCGATAGTCACAGCCTCGCCGAACGAGTTCGGAGGGAGAAAATTGGTGAA 1095
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GGCCAAGCAACCGATAGTCACAGCCTCGCCGAACGAGTTCGGAGGGAGAAAATTGGTGAA 1129
Query 1096 AGGATGAAGCTTCTTCAAGATCTTGTGCCTGGATGCAATAAGGTTACTGGAAAAGCACTG 1155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 AGGATGAAGCTTCTTCAAGATCTTGTGCCTGGATGCAATAAGGTTACTGGAAAAGCACTG 1189
Query 1156 ATGCTTGATGAAATTATAAACTATGTACAATCATTGCAAAGACAAGTTGAGTTCTTGTCA 1215
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1190 ATGCTTGATGAAATTATAAACTACGTACAATCATTGCAAAGACAAGTTGAGTTCTTGTCA 1249
Query 1216 ATGAAGTTATCATCAGTGAACGACACCAGGCTGGATTTTAACGTGGACGCTCTTGTGTCA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 ATGAAGTTATCATCAGTGAACGACACCAGGCTGGATTTTAACGTGGACGCTCTTGTGTCA 1309
Query 1276 AAGGATGTTATGATTCCATCAAGTAACAACCGATTGCATGAAGAAGGACTCCAATCAAAG 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 AAGGATGTTATGATTCCATCAAGTAACAACCGATTGCATGAAGAAGGACTCCAATCAAAG 1369
Query 1336 TCTTCAAGTCGTCATCATCAACAACAACAACTTAATATGTATAATAGTAATAATGCACAA 1395
|||||||||| ||||||||||||||||| ||||||| ||||| | |||| | |||||
Sbjct 1370 TCTTCAAGTCATCATCATCAACAACAAC---TTAATATTTATAACAATAAT--T-CACAA 1423
Query 1396 TTACTTCCCAATATTTCTTCCAATAACATGATGCTCCAATCTCCTATGAACTCTTTGGAA 1455
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1424 TTACTTCCCAATATTTCTTCCAATAACATGATGCTCCAGTCTCCTATGAACTCTTTGGAA 1483
Query 1456 GCCTCTACCTTAGCCAGAAGCTTCACTCACTTACCAACACTTACCCAATTCACTGACTCT 1515
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1484 ACCTCTACCTTAGCCAGAAGCTTCACTCACTTACCAACACTTACCCAATTTACTGACTCA 1543
Query 1516 ATTTCTCAGTATCAAATGTTTAGCGAAGAAGATTTACAAAGCATAGTAGGAATGGGAGTG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1544 ATTTCTCAGTATCAAATGTTTAGCGAAGAAGATTTACAAAGCATAGTAGGAATGGGAGTG 1603
Query 1576 GCACTAAACCCCAACAATGAATCTCAACACATGAAAATTGAGCTTTGATCAACCATTTTT 1635
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 GCAGAAAACCCCAACAATGAATCTCAACACATGAAAATTGAGCTTTGATCAACCATTTTT 1663
Query 1636 T-CATGGTCTCAAGGAAGAAAAATAAGA-AAAAAGGATTGATGGGTGTACATAAACCATA 1693
| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1664 TTCAAGGTCTCAAGGAAGAAAAC-AAGAGAAAAAGGATTGATGGGTGTACATAAACCATA 1722
Query 1694 CCAATATTTGTGATTTATTCATATACTCATCTCCatttatatataaatacacacatttat 1753
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 1723 CCAATATTTGTGATTTATTCATATACTCATCTCCATATATATATGTATACACACTTTTAT 1782
Query 1754 ggaagtaacctataattttt-actttttatattttatattatCATCTTCCAATTCATTAT 1812
|||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1783 GGAAATAACCTATATTTTTTTACTTTTTATACTTTATATTATCATCTTCCAATTCATTAT 1842
Query 1813 TAG--------GG-TTCAATTGTATTGTTATCCACTTTGGTTTCCTTT 1851
||| || |||||||||||||||||||||||||| |||||||
Sbjct 1843 TAGCATTATTAGGGTTCAATTGTATTGTTATCCACTTTGGATTCCTTT 1890
> AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2340899-2343470 REVERSE LENGTH=1842
Length=1842
Score = 73.1 bits (39), Expect = 9e-12
Identities = 128/169 (76%), Gaps = 14/169 (8%)
Strand=Plus/Plus
Query 486 CTCATGTTACGCAACTCCGATGAGCTCTCCACCACCACCGACGAATACGAATTCTCAGAT 545
||| ||||||||||||||||||||||||||||| || || | || || | |||
Sbjct 506 CTCGTGTTACGCAACTCCGATGAGCTCTCCACCGCCTG-GAAGTAT--GA-TGG--AGAC 559
Query 546 GATGATGAACAGAACGACGCCGTTGACGGAATTCTCAG-CAGATCCGGGTTTTGCGGAGA 604
|| | ||| || |||||||| || | ||| | || | | || ||||| || || ||||
Sbjct 560 GA--A--AAC-GA-CGACGCCGATGGCAGAACTGTCCGGC-GACCCGGGATTCGCTGAGA 612
Query 605 GAGCTTCAAGATTCTCTTGTTTTGGTAGCCGGAGCTTTAACGGAAGAAC 653
|||| | || ||||| ||||||||||||||||| |||||| | |||||
Sbjct 613 GAGCGGCGAGGTTCTCGTGTTTTGGTAGCCGGAGTTTTAACAGCAGAAC 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91615994625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5