BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494919
Length=2023
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48570.1 | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type pepti... 2778 0.0
> AT5G48570.1 | Symbols: ROF2, ATFKBP65, FKBP65 | FKBP-type peptidyl-prolyl
cis-trans isomerase family protein | chr5:19690542-19693845
REVERSE LENGTH=2130
Length=2130
Score = 2778 bits (1504), Expect = 0.0
Identities = 1900/2080 (91%), Gaps = 72/2080 (3%)
Strand=Plus/Plus
Query 1 TCGGGACACATCTTTAGGCTC----ATT--ATTG-AAATCAGAATTCTCTAGAGAAACCC 53
||||||||||||||||||||| ||| | || ||||||||| |||||||| ||||||
Sbjct 1 TCGGGACACATCTTTAGGCTCAAGGATTCAAATGAAAATCAGAAGTCTCTAGAAAAACCC 60
Query 54 AAAAAGCActctcttcactctctctctctcCCTATAAATTCTCATCACAA-TT-T--ACC 109
|||| |||||| || || || ||| | ||||||||||||||||||||| || | | |
Sbjct 61 CAAAA-CACTCT-TT--CT-TCACTC-C-CCCTATAAATTCTCATCACAATTTCTCAAAC 113
Query 110 CAACT--T-TCT--CAACACA--CT-T-G--TTACGCTC-T--CTA-C-AATT--CTCTC 151
|| || | ||| ||||||| || | | || | ||| | || | | || |||||
Sbjct 114 CATCTCATCTCTGCCAACACACTCTCTAGAATT-CTCTCGTGATTATCGATTTCACTCTC 172
Query 152 GTAATTTTTGATCAG-AAATGGAAGACGATTTTGACATGCAG---CAGTTTCCAGAAGAG 207
||| ||||||||| |||||||||||||||| |||| |||| |||||||| ||||||
Sbjct 173 TTAA-ATTTGATCAGAAAATGGAAGACGATTTCGACACGCAGAACCAGTTTCCGGAAGAG 231
Query 208 GAACCAGAGGAGATGGATATGGATCTCGCCGACGACGACGAAGCTGACTCTGCTCCTAAT 267
|| |||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||
Sbjct 232 GAGCCAGAGGAGATGGATATGGATCTCCCCGACAATGACGAAGCTGACTCTGCTCCTTAT 291
Query 268 CTGAAAATCGGCGAGGAGAA-GGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAA 326
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 292 CTGAAAATCGGCGAGGA-AATGGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAA 350
Query 327 GGAAGGTGAAAAATGGGATATACCTGAGAATGGAGACGAAGTTGAAGTGCATTACACGGG 386
|||| ||||||||||||| | |||||||| || ||||||||||||||||||||||| ||
Sbjct 351 GGAATGTGAAAAATGGGACACGCCTGAGAACGGTGACGAAGTTGAAGTGCATTACACTGG 410
Query 387 AACTTTGTTAGATGGTACCAAGTTCGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATT 446
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 411 AACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATT 470
Query 447 CACTCTTGGCCAAGGACATGTGATCAAAGGATGGGACTTGGGGATCAAGACAATGAAGAA 506
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 471 TACTCTTGGCCAAGGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAA 530
Query 507 AGGTGAAAATGCTATTTTCACCATTCCGCCTGAGTTGGCTTATGGTGAAACCGGTTCACC 566
||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 531 AGGTGAAAATGCTATTTTCACCATTCCTCCTGAGCTGGCATATGGTGAAACCGGTTCACC 590
Query 567 ACCGACTATTCCTCCGAACGCTACTCTTCAATTTGATGTGGAGTTGATATCATGGAGGAG 626
|||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 591 GCCGACTATACCTCCGAACGCTACTCTTCAGTTTGATGTGGAGTTGATAGCATGGAGGAG 650
Query 627 TGTTAAGGATATATGTGGTGATGGTGGGGTGTTTAAGAAAATAATTGTGGAAGGAGAAAA 686
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 651 TGTTAAGGATATATGTGGTGATGGTGGTGTGTCTAAGAAAATAATTGTGGAAGGAGAAAA 710
Query 687 ATGGGAGAAGCCAAAGGATCTTGATGAAGTGTATGTCAAGTATGAAGCTCGGCTTGAGGA 746
||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 711 ATGGGAGAAGCCAAAAGACCTTGATGAAGTTTACGTCAAGTATGAAGCTCGGCTTGAGGA 770
Query 747 TGGCACCATTGTTGGAAGGTCTGATGGTGCAGAGTTCACTGTCAAGGAGGGCCATTTCTG 806
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 771 TGGCACCATTGTTGGAAAGTCTGATGGTGTAGAGTTTACTGTCAAGGAGGGCCATTTCTG 830
Query 807 TCCTGCGCTTGCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTAACTGT 866
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 831 TCCTGCGCTTTCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTGACTGT 890
Query 867 GAAGCCACAATATGGCTTTGGGGAAATTGGAAGACCAGCTTCTGATGGCCTTCAAGCTGC 926
||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 891 GAAGCCACAATATGGATTTGGGGAATTTGGAAGACCAGCTTCTGATGGTCTTCAAGCTGC 950
Query 927 AATCCCACCAAATGTGACTCTTCAAATCGACCTTGAGTTGGTTTCTTGGAAGACGGTGGT 986
|||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||
Sbjct 951 AATCCCACCAAATGCAACCCTTCAGATTGACCTTGAGTTGGTTTCTTGGAAGACTGTGGT 1010
Query 987 GGAAGTAACTGATGACAAGAAGGTCATTAAGAAAATACTGAAGGAAGGAGAAGGATATGA 1046
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1011 GGAAGTAACTGATGACAGGAAGGTTATTAAGAAAATACTCAAGGAAGGAGAAGGATATGA 1070
Query 1047 GCGTCCTAATGAAGGAGC-AGTTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAA 1105
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCGTCCCAATGAAGGAGCGA-TTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAA 1129
Query 1106 CT---GTGTTCATGAAGAAAGGTTATGAAGAAGATGAGGAACCATTCGAGTTCAAAACTG 1162
| ||||| ||||||||||| |||||||||||||||| || ||||||||||| | ||
Sbjct 1130 CAACCGTGTTTGTGAAGAAAGGTCATGAAGAAGATGAGGAGCCGTTCGAGTTCAAGATTG 1189
Query 1163 ATGAAGAACAAGTAATTGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGG 1222
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 ATGAAGAACAAGTGATAGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGG 1249
Query 1223 TAGGACTCATAACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAGCAGGAGC 1282
||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1250 TAGCACTCATCACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAACAGGAGC 1309
Query 1283 TGGCTGTAATACCGCCAAACTCGACTGTATTCTACGAGGTTGAGCTGGTATCTTTCATCA 1342
|||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||
Sbjct 1310 TGGCTGTAATACCGCCAAACTCGACTGTATACTATGAGGTCGAGTTGGTATCTTTCATCA 1369
Query 1343 AGGAGAAAGAGTCTTGGGATATGAACACGCAGGAAAAGATAGAAGCTGCAGGCAAGAAGA 1402
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1370 AGGAGAAAGAGTCTTGGGATATGAACACACAGGAAAGGATAGAAGCTGCAGGCAAGAAGA 1429
Query 1403 AGGAAGAAGGGAATATGCTGTTCAAAGCTGGAAAATACGCGAGAGCTTCAAAGAGATATG 1462
| |||||||| ||| || |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1430 AAGAAGAAGGCAATGTGTTGTTCAAAGCTGGAAAATACGCAAGAGCTTCAAAGAGATACG 1489
Query 1463 AGAGGGGTGTCAAGTACATAGAATATGAGTCAACTTTCGACGAAGAGGAGAAAAAGAAAG 1522
||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1490 AGAGGGGTGTCAAATATATAGAATATGACTCAACTTTCGACGAAGAGGAGAAAAAGAAAT 1549
Query 1523 CAAAAGATCTCAAGATTGCCTGTAACCTTAATGATGCAGCTTGCAAGCTGAAACTGAAAG 1582
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1550 CAAAAGATCTCAAGATTGCCTGTAACCTGAATGATGCAGCTTGCAAGCTGAAACTGAAAG 1609
Query 1583 ATTACAAGGAAGCAGCAAAATTGTCCACTAAGGTGTTGGAGATGGATAGTAGGAACGTGA 1642
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1610 ATTACAAGGAAGCAGCAAAATTGTCCACAAAGGTGTTGGAGATGGATAGTAGGAACGTGA 1669
Query 1643 AGGCAATGTTTAGGAGAGCACATGCCTACATGGAGACGGCAGATCTTGATTTAGCTGAGC 1702
||||||||| ||||||||||||||||||| |||||||||| ||||||||| | |||||||
Sbjct 1670 AGGCAATGTATAGGAGAGCACATGCCTACTTGGAGACGGCGGATCTTGATCTGGCTGAGC 1729
Query 1703 TTGATATCAAGAAAGCTCTCGAAATCGATCCTGACAACAAGGAGGTGAAGATAGAATATA 1762
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1730 TTGATATCAAGAAAGCTCTCGAAATCGATCCAGACAACAAGGAGGTGAAGATAGAATATA 1789
Query 1763 AGAAGTTGAAGGAGAAGGTGAAAGAGTACAACAAGAAAGATGCTAAGTTTTACAGCAACA 1822
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1790 AGAAGTTGAAGGAGAAGGTGAAAGAGTATAACAAGAAAGATGCTAAGTTTTACAGCAACA 1849
Query 1823 TGTTGTCGAAAATGCTTGAGCCACACAAAGGA-----G-------C----G--ATGAGTA 1864
|||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 1850 TGTTGTCGAAAATGCTTGAGCCACACAAAGGAACTCAGAAGGAAGCACAAGCGATGAGTA 1909
Query 1865 TTGACACCAAGGCATGAGTCTTTAAATCACTTTAGAGAGTAACATTGATTCCAAAAAGTA 1924
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 1910 TTGACACCAAGGCATGAGTCTTTGAATCACTTTAGAGAGTCGCATTGATTCCAAAAACTA 1969
Query 1925 AATGTGAAGAGTCTGTAATTTTCTGTTTT-ACTCTTTGTAATCAATCTTGGTGTGTGTTA 1983
|||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1970 AATGTGAAAAGTCTACAAATTTCTGTTTTTACTCTTTGTAATCAATCTTGGTGTGTGTTA 2029
Query 1984 CTGTTTCAGACGTTGTTGAAATAAAACAGACTTGTAATAA 2023
|||||||||| |||||| | |||||||||||||||||||
Sbjct 2030 CTGTTTCAGA-GTTGTT-A--TAAAACAGACTTGTAATAA 2065
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100250488365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5