BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494926
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48640.1 | Symbols: | Cyclin family protein | chr5:19723533... 1397 0.0
> AT5G48640.1 | Symbols: | Cyclin family protein | chr5:19723533-19725689
REVERSE LENGTH=930
Length=930
Score = 1397 bits (756), Expect = 0.0
Identities = 866/918 (94%), Gaps = 12/918 (1%)
Strand=Plus/Plus
Query 1 CTTCTCCTCCTTACCAAAAACTCGACGGTCTATCGGAAAAAATGGCTGCCAATTTCTGGA 60
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 8 CTTCTCCTCCTTACCAAAGACTCGACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGA 67
Query 61 ATTCATCCCACTATAAACAGCTTTTGGATCCAGAAGAAGTCGATGTAGTTCATGAACTTG 120
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 68 ATTCATCTCACTATAAACAGCTTTTGGATCCAGAAGAAGTCGACGTAGTTCATGATCTCG 127
Query 121 ATAAAGAACGTGGAATTTCAATTGAGGATTTTAAGCTCATCAAGTTCCATATGTCTAATC 180
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 128 ATAAAGAACGTGGAATCTCAATTGATGATTTTAAGCTCATCAAGTTCCATATGTCTAATC 187
Query 181 ATATTATGAAATTGGCTCAACACATTAAAGTGAGGCAAAGGGTTGTGGCTACCGCGATTA 240
||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||
Sbjct 188 ATATTATGAAATTGGCTCAGCACATTAAAGTGAGGCAAAGGGTTGTAGCTACTGCAATTA 247
Query 241 CGTATATGAGACGGGTTTATATCAGAAAGAGTATGGTAGAGTTTGAGCCTCGTCTTGTTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 248 CGTATATGAGACGGGTTTATATCAGAAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTG 307
Query 301 CTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATTGTGCAGGCCAGGAATC 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 308 CTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATC 367
Query 361 TTGTTTTTTACATCAAAAGATTGTATCCTGATGAGTACAACAAATATGAACTAAAAGATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 368 TTGTTTTTTACATCAAAAGATTGTATCCTGATGAGTACAACAAATATGAACTAAAGGATA 427
Query 421 TATTAGGAATGGAGATGAAGGTCTTAGAAGCACTAGACTATTATCTGGTTGTGTTTCACC 480
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 428 TATTAGGAATGGAGATGAAGGTGTTAGAAGCACTAGATTATTATCTGGTTGTGTTTCACC 487
Query 481 CTTACCGGTCATTATCTGAGTTTTTGCAAGATGCTGCAATAAACGATGTAAATATGAACC 540
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 488 CTTACCGGTCATTATCGGAGTTTTTGCAAGATGCTGCATTAAACGATGTAAATATGAACC 547
Query 541 AAATTTCATGGGGAATTGTTAACGATACTTATAAGATGGACCTCATTCTTGTACACCCTC 600
| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 548 AGATTACATGGGGAATTGTTAATGATACTTATAAGATGGACCTCATTCTTGTACACCCTC 607
Query 601 CATATCGCATAGCGCTAGCATGCATATACATAGCAAGTGTCCACAGAGAGAAAGACATCA 660
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 608 CCTACCGCATAGCGCTAGCATGCATATACATAGCAAGTGTCCACAGAGAGAAAGATATCA 667
Query 661 CTGCCTGGTTTGAAGATCTTCATGAGGACATGAACTTGGTAAAGAACATTGCCATGGAGA 720
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 668 CTGCATGGTTTGAAGATCTTCATGAGGACATGAACTTGGTAAAGAATATTGCCATGGAGA 727
Query 721 TTCTGGACTTCTATGAGAATTACAGAACAATCACAGAGGAAAAAGTGAATACTGCTTTCA 780
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 728 TACTGGACTTCTATGAGAACTACAGAACAATCACAGAGGAAAAAGTGAATTCTGCCTTCA 787
Query 781 GCAAATTGGCTTTGAAACCGTAGCAGCCGAGGGAATTGCCTCCATCTCCAAGATTTATCT 840
|||||||||||||||| | |||| || | | | ||||||||||||||| |||||
Sbjct 788 GCAAATTGGCTTTGAAGCTGTAG-AG---A---A-TCACCTCCATCTCCAAGACTTATCG 839
Query 841 CACAGAAAAAACAAGATTAGAGACTTTCACAATTGCCCATC--T-TAGCTTTGTGGCAAA 897
||||||||||| | |||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 840 CACAGAAAAAA-ATGATTAGAGACTTCCACAATTGCCCATCCATCTAGCTTTGTGGCAAA 898
Query 898 CATGTAACACTGTTGTTA 915
|||||||||||||| |||
Sbjct 899 CATGTAACACTGTTATTA 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5