BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494927
Length=1639
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48650.1 | Symbols: | Nuclear transport factor 2 (NTF2) fam... 2344 0.0
> AT5G48650.1 | Symbols: | Nuclear transport factor 2 (NTF2) family
protein with RNA binding (RRM-RBD-RNP motifs) domain |
chr5:19726733-19729654 FORWARD LENGTH=1650
Length=1650
Score = 2344 bits (1269), Expect = 0.0
Identities = 1534/1658 (93%), Gaps = 33/1658 (2%)
Strand=Plus/Plus
Query 1 CCTCTTCCGTTGCCTTTTCGCTTTCTCCGTACACTTGGTCTTCCTTCTCGCGATCAAACC 60
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1 CCTCTTCCGTTGCCTTTTCGCTTTCTCCGTACACTTGGCCTTCCTTCTAGCGATCAAACC 60
Query 61 CTAGGTCCCGCCATTGTTTGTCCCAGACTTAAATCGAAGCTCCAATTTCACTAATTTCAG 120
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CTAGGTCCCGCCATTGTTGGTCCCAGACTTCAATCGAAGCTCCAATTTCACTAATTTCAG 120
Query 121 GTGAAT-CTTCTTCTAGCTTGG-TGAT--AGATACTATGGATTCTGTTGCTG-AACCTAG 175
||| | || |||| | ||| | | ||||| ||||||||| ||||| |||| |
Sbjct 121 GTG-TTGTTTATTCT--C-TGGAAGTTGGCGATACAATGGATTCTACTGCTGCAACC-AA 175
Query 176 CCCTGTTGTTGACCCACTTACTGTTGGGAATGCGTTTGTCAGTCAGTACTACCATGTTTT 235
| |||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||
Sbjct 176 ACGTGTTGTTGACCCACTTACTGTTGGGAGTGCGTTTGTCAATCAGTACTACTACATTTT 235
Query 236 GTATAACATGCCTGAGCATCTGCCCCGGTTCTATCACGAGATCAGTAAAGTTGGGCGTGT 295
| ||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||
Sbjct 236 CTGTAACATGCCTGAGCATCTGCCCCGGTTTTATCAAGAGATCAGTAGAGTTGGCCGTGT 295
Query 296 TGGACAGGACGGAGTCATGCAAAATTTCTCTACCTTGGAGGGTATAACTGAGGAGCTTAA 355
|||||||||||||||||||| ||||||| || || | ||||||| ||||||||||||
Sbjct 296 TGGACAGGACGGAGTCATGCGTGATTTCTCCACTTTTCAAGGTATAAGTGAGGAGCTTAA 355
Query 356 GACACTGACTTAT-G-GA----AATTCGGCTGAGATAACCAGTTATGATACCCAAGCGTC 409
|| |||||||||| | || || |||||||||||||||||||||||||| |||| |||
Sbjct 356 GAGACTGACTTATGGAGATTGCAACTCGGCTGAGATAACCAGTTATGATACTCAAGAGTC 415
Query 410 TCACAATGGGGGTTTCC-TCGTCGCT-GTTACTGGATACTTCACTCTAAATGAGAGGTCG 467
||||||||||||||||| || || | ||||||||||||||||||||||| ||||| |||
Sbjct 416 TCACAATGGGGGTTTCCTTC-TC-TTCGTTACTGGATACTTCACTCTAAACGAGAGATCG 473
Query 468 AGGAGGAAATTCACCCAAACTTTTTTCCTTGCTCCGCAAGAAATTGGG-TTATTTGTTCT 526
|| ||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||
Sbjct 474 AGAAGGAAATTCACCCAAACTTTTTTCCTTGCCCCGCAAGAAA-AGGGTTTCTTTGTTCT 532
Query 527 GAATGACATCCTCAGATTTGTCAATGATGATGCTAAGGATACTGTTCCAGAGACCATAGA 586
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 533 GAATGACATCCTCAGATTTGTTAATGATGATGCTAAGGATAATGTTCCAGAGACCATAGA 592
Query 587 AGGGGAAGTTGTTTCTGGGATAAACTCTACAAGACCCAGTGTTATTAATGGCAAT-AAGG 645
||||||||||||||||||||||||||||||| ||||| | |||| |||||| || ||||
Sbjct 593 TGGGGAAGTTGTTTCTGGGATAAACTCTACAACACCCACTATTATCAATGGC-ATGAAGG 651
Query 646 GCTCGGAGCAAGCTGCATGTGTTTCGGTGAATCCTGTTTCTAAGGAAGTGTCTAAACCCT 705
| ||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||
Sbjct 652 GTTCGGAGCAAGCTGCATGTGTTTCAGTGAATCCTGTTTGTAAGGAAGTGTCCAAACCCT 711
Query 706 TGAATGATGAGAATGCTAAGGATAATGTTCTGGTACCTGAGATTGTC-AATGAAGTTGC- 763
|| || ||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 712 TGGATAATGAGAATGCTAAGGATAATGTTCTGGTACCTGAGATTG-CTAATGAAGTTGCA 770
Query 764 AGAGATTGAGATAACTCGCAAAGAAGTTGCAGATGATTCACCGAAAAATTATGACCCTGA 823
|| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 771 AG-GACTGAGATAACTTGCAAAGAAGTTGCAGATGATTCACAGAAAAATTATGACCCTGA 829
Query 824 TGATGGACTTGAAGATGTTCCCAAGAAATCCTATGCCTCTGTGTTGAAGGTTACGAAAGA 883
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGATGGACTTGCAGATGCTCCCAAGAAATCCTATGCCTCTGTGTTGAAGGTTACGAAAGA 889
Query 884 TAAATCTGGAGTTCCAGCTGGCTCTGTACCTTCTCCAAAGAAGATACCTAAAGACCAAGA 943
||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 890 TAAATTTGGAGTTCCAGCTGTCTCTTTACCTTCTCCAAAGAAGATACCTAAAGACCAAGA 949
Query 944 ACATCAAGCGCCTTCAGATCCTTCTACAGGCCAGATACTCAAAGACCAAGGTCAACAAGC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ACATCAAGCGCCTTCAGATCCTTCTACAGGCCAGATACTCAAAGACCAAGGTCAACAAGC 1009
Query 1004 ATCTTCAGATCCTTCTCAAGTGATAGAATCTGATACAGTTTCTGAGTCTGTTGATGCTGC 1063
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1010 ATCTTCAGATCCTTCTCAAGTGATAGAATCTGATACAGTTTCTGAGTCTGTTGATGCTTC 1069
Query 1064 TGAAAATGGGCACAATCAGGAAGCGGTAGCTGAGGGTACATCTATTTATGTGAAACATCT 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1070 TGAAAATGGGCACAATCAGGAAGCGGTAGCTGAGGGTACATCTATTTATGTGAGACATCT 1129
Query 1124 TCCTTTTAATGCCAACATTGACATGCTTGAGGCCGAATTTAAGCAATTTGGAGCCATTAC 1183
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1130 TCCTTTTAATGCCAACATTGACATGCTTGAGGCTGAATTTAAGCAATTTGGAGCTATTAC 1189
Query 1184 CAATGGTGGGATTCAAGTCATAAACCAAAGGGGCCTTGGTTATCCTTATGGTTTTGTTGA 1243
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1190 CAATGGTGGGATTCAAGTCATAAATCAAAGGGGCCTTGGTTATCCTTATGGTTTTGTTGA 1249
Query 1244 GTTTGAGGAGGCTGATGCTGCCCACAGAGCAATAGAGGCTTCACCTCTGATGATTGGTGG 1303
|||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1250 GTTTGAGGAGGCAGATGCTGCCCACAGAGCAATAGAGGCTTCACCTGTGAAGATTGGTGG 1309
Query 1304 ACAGAGAGCTTTTGTGGAGGAGAAGCTATCGACATCAAGAGGTAACAGAGGAAATGGAAA 1363
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1310 ACTGAGAGCTTTTGTGGAGGAGAAGCTATCGACATCAAGAGGTAAAAGAGGAAATGGAAA 1369
Query 1364 TGGTGG-ATACGGAAATAGAAATGTTGGAGTGGGAATGAGAGGAAGAGGAGGTTATGGAT 1422
| ||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||
Sbjct 1370 CG-TGGGATACGGAAATAGGAATGTGGGAGTGGGAATGAGAGGAAGAGGAAGTTATGGAT 1428
Query 1423 ATGGCTACGATTACAGGAGGGGAGGTAGAGGTTCTGGAGGAGGAGGAAGGTCTTTTAACC 1482
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1429 ATGGCTATGATTACAGGAGGGGAGGTCGAGGTCCTGGAGGAGGAGGAAGGTCTTTTAACC 1488
Query 1483 GTAGAGGCAATGAATACGTCGCCAGCATCAACTCGTACTAGAGCGGGGATT-GGGTTCTT 1541
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct 1489 GTAGAGGCAATGAATACGTCGCCAGCATCAACTCGTACTAGAGCGG--ATTTGGGTTCTC 1546
Query 1542 TTGTGGTGGATAATTGATTTTTGGAATGGTGGAAAGAAGATGGTAGCAAGAAAGACAGAC 1601
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1547 TTGTGGCGGATAATTGATTTTTGGAATGGTGGAAAGAAGATGGTAGCAAGACAGACAGAA 1606
Query 1602 TTGGTAGATATCTCTCTCTCGGTTATTCATATATTAGT 1639
|||||||||||||||||||||| |||||| ||||||||
Sbjct 1607 TTGGTAGATATCTCTCTCTCGGGTATTCAAATATTAGT 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80973479085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5