BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494930
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48655.2 | Symbols: | RING/U-box superfamily protein | chr5... 1496 0.0
> AT5G48655.2 | Symbols: | RING/U-box superfamily protein | chr5:19731173-19733043
REVERSE LENGTH=1105
Length=1105
Score = 1496 bits (810), Expect = 0.0
Identities = 888/926 (96%), Gaps = 4/926 (0%)
Strand=Plus/Plus
Query 437 AGGTACAAAGGTTAGGTTACTTTGAGCTGAAAGATGAACTCG-CAAGAGGTGAGAGTACC 495
|||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||
Sbjct 165 AGGTACAAAGGTTA-GTTACTTTGAGCTGAAAGATGAACACGTC-AGAGGTGAGAGTACC 222
Query 496 TCGAGGAAATCGACGGAGGAAAGCTGTGATTGATCTGAATGCAGTACCTGGAGATCAAGA 555
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 223 TCGAGGAAATCGACGGAGGAAAGCTGTGATTGATCTGAATGCGGTACCTGTTGATCAAGA 282
Query 556 AGGGACCTCTGCTTCTGTAAGATCTCCTACGGTGACTACTACACCGTCTCAGCCTGCTCC 615
|||||||||||||||||| ||| ||| ||||||| ||| |||||||||||||||||||||
Sbjct 283 AGGGACCTCTGCTTCTGTTAGAACTCTTACGGTGCCTATTACACCGTCTCAGCCTGCTCC 342
Query 616 TACAATGATTGATGTCGATGCTATTGAAGATGATGTTATTGAATCATCCGCAAGTGCTTT 675
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 343 TACGATGATTGATGTCGATGCTATTGAGGATGATGTTATTGAATCATCCGCTAGTGCTTT 402
Query 676 TGCTGAAGCTAAAAGCAAATCGAGAAATGCACGTCGGAGACCTTTGATGGTTGATGTAGA 735
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 403 TGCTGAAGCTAAAAGCAAATCAAGAAATGCACGTCGGAGACCTTTGATGGTTGATGTAGA 462
Query 736 GTCAGGAGGTACGACTAGATTGCCTGCCAACATAAGCAACAAACGCAGAAGGGTTCCTTC 795
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 463 GTCAGGAGGTACGACTAGATTCCCTGCCAACATAAGCAACAAACGCAGAAGGATTCCTTC 522
Query 796 TAGTGAACCTGTCATCGACTGTGAGCATGCCTATGTAAATGATGAAGTCAACATGTCTTC 855
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 523 TAGTGAATCTGTCATCGACTGTGAGCATGCCTCTGTAAATGATGAAGTCAACATGTCTTC 582
Query 856 GAGAGTGTCTAGATCAAAGGCTCCAGCTCCTCCACCAGAAGAGCCAAAGTTTACATGCCC 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 583 GAGAGTGTCTAGATCAAAGGCTCCAGCTCCTCCACCAGAAGAGCCAAAGTTTACATGTCC 642
Query 916 AATCTGCATGTGTCCCTTTACGGAGGAGATGTCAACCAAGTGCGGTCACATCTTCTGCAA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 AATCTGCATGTGTCCCTTTACGGAGGAGATGTCAACCAAGTGCGGTCACATCTTCTGCAA 702
Query 976 GGGATGTATAAAGATGGCAATATCTCGCCAGGGCAAATGCCCTACTTGTAGGAAAAAGGT 1035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGGATGTATAAAGATGGCAATATCTCGCCAGGGCAAATGCCCTACTTGTAGGAAAAAGGT 762
Query 1036 TACTGCGAAAGAGCTGATTCGAGTATTCCTTCCAGCCACTAGATGAGTGGTCCGGCAACA 1095
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 763 TACTGCAAAAGAGCTGATTCGAGTTTTCCTTCCAACCACTAGATGAGTGGTCCGGCAACA 822
Query 1096 TCACCAGCCACCCTGTCTAATGGTTTGTCAGACTATCCTCCTATTCACTTTGGAACATTG 1155
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 823 TCACCAGCCACCCTGTCTAATGGTTTATCAGACTATCCTCCTATTCACTTTGGAACATTG 882
Query 1156 AAGGGACTTTATTGACTTCATAATTTTGAATATTTTGCTTTGGTGGAAGAGAAATATTCA 1215
||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 883 AAGGGACTTCGTTGACTTGGTATTTTTGAATATTTTGCTTTGTTGGAAGAGAAATATTCA 942
Query 1216 GTCATCAAGAAGCCAGAAGGCCCTATCATTTGATGGATATCATTGGTAATAAGTCTTGGT 1275
|| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 943 GTGATCAAGAAGCCAGAAGGCCCTATCATTCGATGGATATCATTGGTAATAACTCTTTGT 1002
Query 1276 TTTTTAGTTGTTGTTCTATGTAATTTAGGTCTCTGCAAACCTCTCAGTTGATACTCTTCT 1335
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1003 TTTT-AGTTGTTGTTCTATGTAATTTAGGTCTCTGCAAACCTCTCAGTCGATACTCTTCT 1061
Query 1336 CTCTTGATAGATGAAAAGATATATGG 1361
|||||||||||||| |||||||||||
Sbjct 1062 CTCTTGATAGATGATAAGATATATGG 1087
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5