BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494931
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48657.1 | Symbols: | defense protein-related | chr5:197339... 907 0.0
> AT5G48657.1 | Symbols: | defense protein-related | chr5:19733917-19735489
REVERSE LENGTH=1484
Length=1484
Score = 907 bits (491), Expect = 0.0
Identities = 578/620 (93%), Gaps = 5/620 (1%)
Strand=Plus/Plus
Query 32 AATCGTCCACACGTGCCCAAATTCGGAGACTGGACCGAAGATGCTCCTGCATTCACGGTC 91
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 555 AATCGTCCACACGTGCCCAAATTCGGAGACTGGACCGAAGATGCTCC---ATTCACGGTC 611
Query 92 GTGTTCGAAAAAGTGAGCAAAAGCAAGAAAGATATGAACGTGTCCAACCCGAATGAATAT 151
||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 612 GTGTTCGAAAAAGCAAGCAAGAGCAAGAAAAATATGAACGTGGCCAACCCGAATGAATAT 671
Query 152 CCAGAAATGAATCCAAACGCTGCACAAAATCGAAATATGTCTAGGCATGACCAACAACCA 211
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 672 CCAGATATGAATCCAAACGCTGCACAAAATCGAAATATGTCTAGGCCTGACCAACAACCA 731
Query 212 CCAAACCATCATGTTAGACCAAGACATGAAAGATTCAATAGCAGAGAAGAAACCGAATTC 271
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 732 CCAAACCATAATGTTAGACCAAGACATGAAAGATTCAATAGCAGAGACGAAACCGAATTC 791
Query 272 AGACCGTCTCCTATACACAATGAAAGAAACAAAAGAGTTAGATCAGTTCCTCCCACACCA 331
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 792 AGACCGTCTCCTGCACACAATGAAAGAAACAACAGAGTTAGATCAGTTCCTCCCACACCA 851
Query 332 GAAACATCCAACCATCAATCATATGGTGGAGGAGGCAGATCAATGGGAAATCCGTCGGAA 391
||||||| |||||||||| ||||||||||||| |||||||||||||||||||| | |||
Sbjct 852 GAAACATACAACCATCAAACATATGGTGGAGGTGGCAGATCAATGGGAAATCCAACAGAA 911
Query 392 ACAAATAGACGGCAATCACGTGATCATGTCCCGGTACGGCCCATACGCAATCTTAGAGGT 451
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 912 ATAAATAGACGGCAATCACGTGATCATGTCCCGGCGCGGCCAATACGCAATCTTAGAGGG 971
Query 452 CAAAGTAGTGAAAGGGTGGCGACTATTCCACCGTTTCCTGGATCTGGTTCGAACATGGAG 511
||||||||||||||||||||||||||||| || ||||||||| | ||||| ||||||||
Sbjct 972 CAAAGTAGTGAAAGGGTGGCGACTATTCCTCCATTTCCTGGAACGGGTTCTAACATGGAA 1031
Query 512 GATCAGAGTTACACACTCATCTTTGACAAAGTGAAAGAAGATAGGAACCAAGCAAGGTCT 571
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 1032 AATCAGAGTTACACACTTATCTTTGACAAAGTGAAAGAAGATAGGAACCAAGCGAGATCT 1091
Query 572 T-CTAATGGAACCGATCATAGCACCCCGACTCAACCCATGATCAACCAACATCATCAACC 630
| | |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 1092 TAC-AATGGAACCGATCATAGCACCCCGACTCGACCCATCATCGACCAACATCATCAACC 1150
Query 631 TTTACCTTCTAGTCCCAAGG 650
|||||||||||||||||||
Sbjct 1151 ATTACCTTCTAGTCCCAAGG 1170
Score = 115 bits (62), Expect = 5e-25
Identities = 69/72 (96%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 648 AGGGTTGCTGTTTTCCTCCATGGAGCCGAAAGGGAAGCTAATGAAGATGATCATATCCCT 707
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1241 AGGGTTGCTGTTTTCCTCCATGGAGCCGAAAGGGAAGCTAATGAAGATGATCATTTCCCT 1300
Query 708 TTCTTT-CATAA 718
|| ||| |||||
Sbjct 1301 TT-TTTACATAA 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34812263871
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5