BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494932
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48660.1 | Symbols: | B-cell receptor-associated protein 31... 1698 0.0
> AT5G48660.1 | Symbols: | B-cell receptor-associated protein
31-like | chr5:19736647-19738538 FORWARD LENGTH=1210
Length=1210
Score = 1698 bits (919), Expect = 0.0
Identities = 1075/1147 (94%), Gaps = 23/1147 (2%)
Strand=Plus/Plus
Query 1 ACTGAACTTTTCTCAGATCCTTCTTCTTCACTATTCAGTGTTTCATCTCTCCTACTAAAA 60
|||||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||
Sbjct 1 ACTGAACTTTTCTCAGAT-C--CTTCTTCACTCTTCAGTGTTTCCTCTCTCCTACTAAAA 57
Query 61 CCTTCTTCGA-TTTCTTGACTTCAATTCTTCTTTTAGTCCTCTCCATTTTATGATTTCTT 119
|||||||| | |||||||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct 58 CCTTCTTC-AGTTTCTTGAATTCAATTCTTCTCTTAGTCTTCTCCATTTTATGATTTCTT 116
Query 120 GGTGGTATCAAGAACTGAGTGACCAATTTCTTGAAAAAGCAAATGGGTTTTAGATAAATT 179
|||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||| |
Sbjct 117 GGTGGTATCAAGAACTCAGTGACCGATTTCTTGAAAAAGCTAATGAGTTTTAGATAAACT 176
Query 180 CGTTGCTTGCTTTCTCTTCGTTCTCCGATCTGGGTTTTGGTTTT-AATCTCATACCCAAG 238
||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 177 CGTTGCTTGCTTTCTCTTCATTCTCCGATCTGGGTTTTGGTTTTAAATC-CATACCCAAG 235
Query 239 TAGCAAAACTTGAAGACAAGAG-T-GAGAAATTAGGGTTTAGAGTTTACCTTATTGGTGA 296
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 236 TAGCAAAACTAGAAGACAAGAGCTATAGAAATTAGGGTTTAGAGTTTACCTTATTGGTGA 295
Query 297 ATTGTGGTAAAGGAACAAACTTTA-GGGGA-AA---ATTCAGACATGATTCAGTTACTGT 351
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 296 ATTGTGGTAAAGGAACAAACTTTAGGGGGAGAACTCATTCAGACATGATTCAGTTACTGT 355
Query 352 TTCTAGTTCTATTTGTGGAAGGTGCGATTGCATTCTTACTGTTGATAAAGATTGGTCCTT 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TTCTAGTTCTATTTGTGGAAGGTGCGATTGCATTCTTACTGTTGATAAAGATTGGTCCTT 415
Query 412 TGAGAGAGCTTGTGATTAAAAGCCTTGACCAGATGAAGATGGGTAAAGGTCCTGCCACTG 471
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 416 TGAGAGAGCTTGTGATTAAAAGTCTTGACCAGATGAAGATGGGTAAAGGTCCTGCCACTG 475
Query 472 TGAAAACCATTGCTGGAACTATGTCTGTTATACTCTTCTCTAATCTCATGAGCATTGTCA 531
||||||| || |||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 476 TGAAAACAATCGCTGGAACTATGTCTGTTATTCTCTTTTCTAATCTTATGAGCATTGTCA 535
Query 532 AGATCCAGAACAAAGGTGCAAAGCTTGGGACAATGTCTCCTATGGATCAGGTTCTTTGGA 591
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 AGATCCAGAATAAAGGTGCAAAGCTTGGGACAATGTCTCCTATGGATCAGGTTCTTTGGA 595
Query 592 GAACACACTTGCTTGAAGCTTCTTTATTGGGAGTCGTACTTTTTCTCGGCTTCATAATTG 651
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 596 GAACACACTTGCTTGAAGCTTCTTTATTGGGAGTCGTACTTTTTCTCGGCTTTATAATTG 655
Query 652 ACAGAATGCATCACTACCTCAGAAAGCTAATCAATTTAAGAAGCAATGTTGGGTCATCGA 711
||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 656 ACAGAATGCATCACTACCTCAGAAAGCTAATCAATTTGAGAAGCAACGTCGGATCATCGA 715
Query 712 AAGATGAACTTGAACAGCTTCAGAAAGAAAGAGCCGGACTGAAGGAGAAAGAGGATAAAG 771
|||| |||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||
Sbjct 716 AAGAAGAACTTGAACAGCTCCAGAAAGAAAGAACCGAACTGAAGGAGAAAGAGGAGAAAG 775
Query 772 CATCCAAGGAAATCAAGCAGCTGCAAGAAAAACTGTCATCTATTTTAGAGAGACTaaaaa 831
|||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||| |
Sbjct 776 CATCCAAGGAAATCAAGCAGTTGCAAGTAAAATTGTCATCTATTACAGAGAGACTAAAGA 835
Query 832 aaGCAGAGACTGAGTCGAAAGAGAAAGAGAAGAAACTCGAAACCGCTGAAACCCATGTCA 891
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 836 AAGCAGAGACTGAGTCAAAAGAGAAAGAGAAGAAACTCGAAACTGCTGAAACACATGTTA 895
Query 892 CGGCGCTACAGAAACAGTCTGCAGAGCTGCTTCTAGAGTATGATAGATTGCTAGAAGATA 951
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CGGCGTTACAGAAACAGTCTGCAGAGCTGCTTCTAGAGTATGATAGATTGCTAGAAGATA 955
Query 952 ACCAACATCTCCAAAGCCAAATCTTGGGGAAAACCAAGAGCTGAGGTTAAGTTTGTCTGG 1011
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 956 ACCAACATCTCCAAAGCCAAATCTTGGGGAAAACCAAGAGCTGATGTTAAGATTGTCTGG 1015
Query 1012 TGTCATTTAACCATGGTGAAAAAGAGAAAGTTTATGGAGTATTGTAGTTGCAGGAGTTCT 1071
||| ||||||| ||| | |||| |||||| ||||||||||||||||||| ||||
Sbjct 1016 TGTTATTTAACAATG---A----GAGA--GTTTATAGAGTATTGTAGTTGCAGGAATTCT 1066
Query 1072 TGCAACATTTTTGTTTTTAGTATATGGATATTGAATGGTTATTGTTTCTTCTCAAGTCTT 1131
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1067 TGCAACATTTTTGTTTTTAGTGTATGGATATTGAATGGTTCTTGTTTCTTCTCAAGTCTT 1126
Query 1132 TGGAATG 1138
|||||||
Sbjct 1127 TGGAATG 1133
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5