BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494934 Length=980 Score E Sequences producing significant alignments: (Bits) Value AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 1216 0.0 AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 313 2e-84 > AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr5:19744431-19746190 REVERSE LENGTH=1052 Length=1052 Score = 1216 bits (658), Expect = 0.0 Identities = 810/881 (92%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 53 AGGGTTTAGGGTTCttttttttttttGTCTTCCCCCATTCGATATGTATTCAGATCAAGT 112 ||||||||||| | || ||| |||||| |||||| ||||||||||||||| |||| ||| Sbjct 97 AGGGTTTAGGG-T-TTCATTTATTTTGTTTTCCCCAATTCGATATGTATTCTGATCTAGT 154 Query 113 GGTGGCTGAAACTAGAATCAGCAAATCGTTAAAGAACCGCCTCAATGGCGCTTCCGGTGA 172 |||||||||||||| |||||||||| |||| |||||||| |||||||| | ||||||||| Sbjct 155 GGTGGCTGAAACTAAAATCAGCAAAACGTTCAAGAACCGTCTCAATGGTGGTTCCGGTGA 214 Query 173 CGTCTCTTCTCGCGGCAAACAACAACAAGTCACGAGGAAGAGAGGAAGGCAGGATGATGA 232 | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 215 CTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAGAGGAAGGCAAGATGATGA 274 Query 233 TAAGTGGGAGCATGATCTTTTCGATGACGACGACGTGCCTCGGCTTTCAAAACGCAGATT 292 |||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||| | Sbjct 275 TAAGTGGGAGCATGATCTTTTCGAAGACGATGACGAGCCTCGGCTTTCAAAACGTAGAGT 334 Query 293 TGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACATCATGGCTTGCAAATTGGTGG 352 ||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| Sbjct 335 TGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGTCATGGCTCGCAAATTGGTGG 394 Query 353 ACGAGTGTTTAGTTTGAGCGTCGG-GGATCTACGGA-ATAAGCTATCCGGGACAGTGAAT 410 |||||| |||||| | ||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct 395 ACGAGTATTTAGTGTAAGCGT-GGCGGATCTAC-GAGATAAGTTATCCAGGACAGTGAAT 452 Query 411 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCTATAAAGAAGGTTGCAG-G 469 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 453 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCCATAAAGAAGGTTTCAGTG 512 Query 470 GGTAACCAAATCCGAGACTAGAACGGCTCCGAACAGAG-TAATCAAGAAGAAACCACAGC 528 || ||||||| ||||||||||| |||||||||| |||| | | ||||||| | ||||||| Sbjct 513 GG-AACCAAACCCGAGACTAGAGCGGCTCCGAATAGAGCT-ACCAAGAAGGATCCACAGC 570 Query 529 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCG 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 571 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTG 630 Query 589 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCA 648 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 631 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTTAGGCATATGACAGATGATGACCTCA 690 Query 649 AAGCTCTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708 ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| | Sbjct 691 AAGCTTTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCTTTGGGAGATAACC 750 Query 709 GTGGATAGTCCAGCTTCTCAAGCTTAGGTGCATGATGAT--ACATCTGGGATATTGTCAG 766 |||||||||||||| | || ||||||||||||||||||| |||||| |||||||||||| Sbjct 751 GTGGATAGTCCAGC-T-TCGAGCTTAGGTGCATGATGATACACATCTCGGATATTGTCAG 808 Query 767 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTT-CCTTTCTCATCTGTATCTCAAGAG 825 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 809 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTTATCTTTCTCATATGTATCTCAAGAG 868 Query 826 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGAGAG 885 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 869 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGA--- 925 Query 886 ACAAGAAGAGCAATGTTGCAATGTGCTTAAGATCTTGCTTC 926 ||||| ||||||||||| |||||| ||||||||||||||| Sbjct 926 -CAAGAGGAGCAATGTTGGAATGTGTTTAAGATCTTGCTTC 965 Score = 63.9 bits (34), Expect = 3e-09 Identities = 40/43 (93%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 2 TTAGGGTTTTGTAACTTTGGAGAGCTCAACTTCTGTTTCATTC 44 ||||||||||||||||||||||||||||| ||| ||||| ||| Sbjct 28 TTAGGGTTTTGTAACTTTGGAGAGCTCAAGTTCGGTTTCGTTC 70 > AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-containing protein | chr3:2280194-2282339 FORWARD LENGTH=1088 Length=1088 Score = 313 bits (169), Expect = 2e-84 Identities = 494/641 (77%), Gaps = 62/641 (10%) Strand=Plus/Plus Query 96 ATGTATTCAGATCAAGTGGTGGCTGAAACTAGAATCAGCAA-ATCGTTAAAGAACCGCCT 154 |||||| | ||| || ||| |||||| || ||| ||| || ||||| ||| | || | Sbjct 235 ATGTATGCTGATAAATTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTT-AAGGATCGTAT 293 Query 155 CAATGGCGCTTCCGGTGACGTCTCTTCTCGCGGCAAACAACAACAAGTCAC-GAGGAAGA 213 |||||||| ||| || ||| ||||| ||||| | | |||||| || | |||||| Sbjct 294 CAATGGCGGTTCTGGAGACATCTCTACTCGC-G-----TGCGACAAGTGACTG-GGAAGA 346 Query 214 GAG-GAAGGCAGGATGATGATAAGTGGGAGCATGATCTTTTCGATG-ACGACGACGTGCC 271 | | ||||||||| || | || |||||||||||||||||| | | | | ||| || Sbjct 347 G-GCAAAGGCAGGACGA-CA-AA-TGGGAGCATGATCTTTTC-A-GTA-G-TGACAAACC 398 Query 272 TCGGCTTTCAAAACGCAGATTTGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACA 331 || |||||||| ||||| ||||||||| |||||| || |||||||||||||||| ||| Sbjct 399 TCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACA 458 Query 332 TCATGGCT-TGCAAATTGGTGGACGAG-TGTTTAGTTTGA-GCGTCG-GGGATCTACGGA 387 |||||| | | |||| |||| |||| | | | || | |||| | ||||| ||||| Sbjct 459 TCATGGGTCT-CAAA---GTGGGCGAGAAG-CT-GGTTCAGGCGT-GCGGGATTTACGGG 511 Query 388 ATAAGCTATCCGGGACAGTGAATC--C-A-CAAACAA-A--GA---A-C--AGT-AAAAG 433 || |||| || |||||| |||||| | | |||| || | || | | | | |||| Sbjct 512 ATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAG 571 Query 434 -GGAGGCTGTTAGACC-AGCTATAAAGAAGGTTGCAGGGGTAAC-CAAATCCGAGACTAG 490 |||||||| ||| || || ||| ||| | | | | | | || ||| | |||||||| Sbjct 572 CGGAGGCTGCTAGGCCAAG-TATGAAG-A-G-CGTA-GCG--ACTGAAA-CAGAGACTAG 623 Query 491 AACGGC-TCCGA-ACAGAG-TAATCAAGAAGAAACCACAGCAGAATGATGCATCGGTTGA 547 || | ||| | || || | | || ||||||| |||||||| |||| |||||||||| Sbjct 624 AAAAACTTCC-AGTCA-AGCT-ACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGA 680 Query 548 TAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCGCATTTCAAGTGGAAGAAGT 607 |||||| || |||||||||||||||||||||||||| || || ||||||||||||||||| Sbjct 681 TAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGT 740 Query 608 TGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCAAAGCTCTGCTCATACCAAT 667 ||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| || Sbjct 741 TGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGAT 800 Query 668 GGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708 ||| || |||||||||||||||||||| ||||||||||||| Sbjct 801 GGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAAC 841 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47973610385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5