BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494934
Length=980
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 1216 0.0
AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-cont... 313 2e-84
> AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr5:19744431-19746190 REVERSE LENGTH=1052
Length=1052
Score = 1216 bits (658), Expect = 0.0
Identities = 810/881 (92%), Gaps = 19/881 (2%)
Strand=Plus/Plus
Query 53 AGGGTTTAGGGTTCttttttttttttGTCTTCCCCCATTCGATATGTATTCAGATCAAGT 112
||||||||||| | || ||| |||||| |||||| ||||||||||||||| |||| |||
Sbjct 97 AGGGTTTAGGG-T-TTCATTTATTTTGTTTTCCCCAATTCGATATGTATTCTGATCTAGT 154
Query 113 GGTGGCTGAAACTAGAATCAGCAAATCGTTAAAGAACCGCCTCAATGGCGCTTCCGGTGA 172
|||||||||||||| |||||||||| |||| |||||||| |||||||| | |||||||||
Sbjct 155 GGTGGCTGAAACTAAAATCAGCAAAACGTTCAAGAACCGTCTCAATGGTGGTTCCGGTGA 214
Query 173 CGTCTCTTCTCGCGGCAAACAACAACAAGTCACGAGGAAGAGAGGAAGGCAGGATGATGA 232
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 215 CTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAGAGGAAGGCAAGATGATGA 274
Query 233 TAAGTGGGAGCATGATCTTTTCGATGACGACGACGTGCCTCGGCTTTCAAAACGCAGATT 292
|||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||| |
Sbjct 275 TAAGTGGGAGCATGATCTTTTCGAAGACGATGACGAGCCTCGGCTTTCAAAACGTAGAGT 334
Query 293 TGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACATCATGGCTTGCAAATTGGTGG 352
||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 335 TGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGTCATGGCTCGCAAATTGGTGG 394
Query 353 ACGAGTGTTTAGTTTGAGCGTCGG-GGATCTACGGA-ATAAGCTATCCGGGACAGTGAAT 410
|||||| |||||| | ||||| || |||||||| || ||||| ||||| |||||||||||
Sbjct 395 ACGAGTATTTAGTGTAAGCGT-GGCGGATCTAC-GAGATAAGTTATCCAGGACAGTGAAT 452
Query 411 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCTATAAAGAAGGTTGCAG-G 469
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 453 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCCATAAAGAAGGTTTCAGTG 512
Query 470 GGTAACCAAATCCGAGACTAGAACGGCTCCGAACAGAG-TAATCAAGAAGAAACCACAGC 528
|| ||||||| ||||||||||| |||||||||| |||| | | ||||||| | |||||||
Sbjct 513 GG-AACCAAACCCGAGACTAGAGCGGCTCCGAATAGAGCT-ACCAAGAAGGATCCACAGC 570
Query 529 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCG 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 571 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTG 630
Query 589 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCA 648
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 631 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTTAGGCATATGACAGATGATGACCTCA 690
Query 649 AAGCTCTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 691 AAGCTTTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCTTTGGGAGATAACC 750
Query 709 GTGGATAGTCCAGCTTCTCAAGCTTAGGTGCATGATGAT--ACATCTGGGATATTGTCAG 766
|||||||||||||| | || ||||||||||||||||||| |||||| ||||||||||||
Sbjct 751 GTGGATAGTCCAGC-T-TCGAGCTTAGGTGCATGATGATACACATCTCGGATATTGTCAG 808
Query 767 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTT-CCTTTCTCATCTGTATCTCAAGAG 825
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 809 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTTATCTTTCTCATATGTATCTCAAGAG 868
Query 826 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGAGAG 885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 869 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGA--- 925
Query 886 ACAAGAAGAGCAATGTTGCAATGTGCTTAAGATCTTGCTTC 926
||||| ||||||||||| |||||| |||||||||||||||
Sbjct 926 -CAAGAGGAGCAATGTTGGAATGTGTTTAAGATCTTGCTTC 965
Score = 63.9 bits (34), Expect = 3e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 2 TTAGGGTTTTGTAACTTTGGAGAGCTCAACTTCTGTTTCATTC 44
||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 28 TTAGGGTTTTGTAACTTTGGAGAGCTCAAGTTCGGTTTCGTTC 70
> AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-containing
protein | chr3:2280194-2282339 FORWARD LENGTH=1088
Length=1088
Score = 313 bits (169), Expect = 2e-84
Identities = 494/641 (77%), Gaps = 62/641 (10%)
Strand=Plus/Plus
Query 96 ATGTATTCAGATCAAGTGGTGGCTGAAACTAGAATCAGCAA-ATCGTTAAAGAACCGCCT 154
|||||| | ||| || ||| |||||| || ||| ||| || ||||| ||| | || |
Sbjct 235 ATGTATGCTGATAAATTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTT-AAGGATCGTAT 293
Query 155 CAATGGCGCTTCCGGTGACGTCTCTTCTCGCGGCAAACAACAACAAGTCAC-GAGGAAGA 213
|||||||| ||| || ||| ||||| ||||| | | |||||| || | ||||||
Sbjct 294 CAATGGCGGTTCTGGAGACATCTCTACTCGC-G-----TGCGACAAGTGACTG-GGAAGA 346
Query 214 GAG-GAAGGCAGGATGATGATAAGTGGGAGCATGATCTTTTCGATG-ACGACGACGTGCC 271
| | ||||||||| || | || |||||||||||||||||| | | | | ||| ||
Sbjct 347 G-GCAAAGGCAGGACGA-CA-AA-TGGGAGCATGATCTTTTC-A-GTA-G-TGACAAACC 398
Query 272 TCGGCTTTCAAAACGCAGATTTGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACA 331
|| |||||||| ||||| ||||||||| |||||| || |||||||||||||||| |||
Sbjct 399 TCAACTTTCAAATCGCAGGGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACA 458
Query 332 TCATGGCT-TGCAAATTGGTGGACGAG-TGTTTAGTTTGA-GCGTCG-GGGATCTACGGA 387
|||||| | | |||| |||| |||| | | | || | |||| | ||||| |||||
Sbjct 459 TCATGGGTCT-CAAA---GTGGGCGAGAAG-CT-GGTTCAGGCGT-GCGGGATTTACGGG 511
Query 388 ATAAGCTATCCGGGACAGTGAATC--C-A-CAAACAA-A--GA---A-C--AGT-AAAAG 433
|| |||| || |||||| |||||| | | |||| || | || | | | | ||||
Sbjct 512 ATCAGCTCTCTGGGACAATGAATCAGCAACCAAAAAACAGTGACCCACCAAAATCCAAAG 571
Query 434 -GGAGGCTGTTAGACC-AGCTATAAAGAAGGTTGCAGGGGTAAC-CAAATCCGAGACTAG 490
|||||||| ||| || || ||| ||| | | | | | | || ||| | ||||||||
Sbjct 572 CGGAGGCTGCTAGGCCAAG-TATGAAG-A-G-CGTA-GCG--ACTGAAA-CAGAGACTAG 623
Query 491 AACGGC-TCCGA-ACAGAG-TAATCAAGAAGAAACCACAGCAGAATGATGCATCGGTTGA 547
|| | ||| | || || | | || ||||||| |||||||| |||| ||||||||||
Sbjct 624 AAAAACTTCC-AGTCA-AGCT-ACCAGGAAGAAATCACAGCAGGCTGATTCATCGGTTGA 680
Query 548 TAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCGCATTTCAAGTGGAAGAAGT 607
|||||| || |||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 681 TAGCTTTCTTGAATCATTGGGTCTCGAGAAATATTCAACAGCGTTTCAAGTGGAAGAAGT 740
Query 608 TGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCAAAGCTCTGCTCATACCAAT 667
||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||| ||
Sbjct 741 TGATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCTATGCTCATACCGAT 800
Query 668 GGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708
||| || |||||||||||||||||||| |||||||||||||
Sbjct 801 GGGTCCGAGGAAGAAGATACTTCTTGCTTTGGGATCTAAAC 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47973610385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5