BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494937
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48720.2 | Symbols: XRI, XRI1 | x-ray induced transcript 1 |... 1371 0.0
> AT5G48720.2 | Symbols: XRI, XRI1 | x-ray induced transcript 1
| chr5:19758881-19761721 FORWARD LENGTH=1229
Length=1229
Score = 1371 bits (742), Expect = 0.0
Identities = 870/929 (94%), Gaps = 20/929 (2%)
Strand=Plus/Plus
Query 1 CGGATGTGCCTGATTGCACGATGACTGAAGTCAC-TCTAAACCAAGAAGATCACTCGTAC 59
||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 309 CGGATGTGCCTGACTGCACGATGACTGAAGTCACAT-TGAACCAAGAAGATCACTCGTAC 367
Query 60 ATGTTTGATGATGAAACTACCCCTGTGAAAGCATGTAGCGAGTTGGGTTATCATGTCACA 119
|||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 368 ATGTTTGATGATGAAAATACTCCTGTGAAGGCATGTAGCGAGTTGGGTTACCATGTCACA 427
Query 120 ACAGAGGACACGAACAGGAAAATGGAAGTGCATAGTGAGACACGCTCTGCTTTAAAGAGG 179
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 428 ACAGAGGACACGAACAGGAAAATGGAAGTGCACAGTGAGACACGCTCTGCTTTAAAAAGG 487
Query 180 CGTCGGATGTTGCAGTTCGAAGACCAACCTGAAACATCGCTTTTCAGCTGTGAGAGTTTC 239
||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 488 CGTCGGATGTTGCAGTTTGAAGACCAACCTGAAACATCCCTTTTCAGCAGTGAGAGTTTC 547
Query 240 TCTGCAATCTTAAAATCTAGCGCTAGAGATGAGACATTTGATGAGCTTTTACCCGAAGGG 299
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 548 TCTGCAATCTTAAAATCAAGTGCTAGAGATGACACATTTGATGAGCTTTTACCCGAAGGG 607
Query 300 TCTCAGCTTATAGAAGGGTTTTCAGAAGACGCTTCTGCCTCTAGCTTTGAGGGCCTTGAT 359
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 608 TCTCAGCTTATAGAAGGGTTTTCAGAAGACGCTTCTGCCTCTAGCTTCGAGGGCCTTGAT 667
Query 360 CTGTATGCTGAAGAGTGGTACGCTGAATGCTTAAATGATGCTGAGACTCCAATGCTACCT 419
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 668 CTGTACGCTGAAGAGTGGTATGCTGATTGCTTAAATGATGCTGAGACTCCAATGCTACCT 727
Query 420 GATGACTTAAGCTTTGGTTCCCCTGATGTCCAAGTAGATATTTCAGAGTATTTGAATGTG 479
|||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 728 GATGACTTAAACTTTGGTTCACCTGATGTTCAAGTAGATATTTCAGAGTATTTGAATGTG 787
Query 480 CCACCAGAAACAGAGACCAGGGAAGCTCAGCGGCCTGTGACTCGATCTTCTCCAAATGTT 539
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 788 CCACCAGAAACAGAGACTAGGGAAGTTCAGCGGCCTGTGACTCGATCTTCTCCAAATGTT 847
Query 540 ATCTTTAAAGGTCGGAAATCTTTTTCAAGACCAGTGTCAAAGCTACCATCTTCTATCATC 599
|||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 848 ATCTTTAAAGGTAGGAAATCGTTTTCAAGGCCAGTTTCAAAGCTACCATCTTCAATCATC 907
Query 600 TATCCATTTGCATTCATCAAACCATGTGGTGTTCACGGTGGTATGACTCTCAAGGACATA 659
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 908 TATCCATTTGCATTCATCAAACCATGTGGGGTTCACGGTGGAATGACTCTCAAGGACATA 967
Query 660 AACCAGAAAATCCGAAATCCACCAGCAAAACCCAAA--CAACACATAGAAGAGCCTGCAG 717
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 968 AACCAGAAAATCCGAAATCCACCAGCAAAACC-AAAGGCA-CACATAGAAGAGCCTGCAG 1025
Query 718 TGATCCAAACTTCAGCATTCTCTGGGAAGCCCGTTGTAGGGAAGACTAAAATCCGCACCG 777
|||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 1026 TGATCCAAACTTCAGCATTCTCAGGGAAACCCGTTGTTGGAAAGACTAAAATCCGCACCG 1085
Query 778 AAGGAGGAAAAGGAAGCATCACGATAATGAGGACGAGAGGCTAAAGCTAAGCTAAGTTAA 837
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 1086 AAGGAGGAAAAGGAAGCATCACGATAATGAGGACTAGAGGCTAAAGCTAAGTTAAGT-AA 1144
Query 838 TAAGTAGTAATAAGCTGATAGAAG-TATTTAAGGTTTTAAAATTCACTGCTGAAAACTTT 896
||||||||||||||||||||| | ||||| ||| |||||||| |||||||||
Sbjct 1145 ---GTAGTAATAAGCTGATAGAAGGT-TTTAA------AAA-TTCACTGCAGAAAACTTT 1193
Query 897 AAAA-TTTTCGCCTTATTCTCAGAGGCCC 924
||| |||| |||||||||||||||||||
Sbjct 1194 TAAACTTTTTGCCTTATTCTCAGAGGCCC 1222
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5