BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494938
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48730.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1317 0.0
> AT5G48730.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr5:19763152-19765272 FORWARD LENGTH=1663
Length=1663
Score = 1317 bits (713), Expect = 0.0
Identities = 794/833 (95%), Gaps = 5/833 (1%)
Strand=Plus/Plus
Query 783 GTTTGTGGAGATGGAATCAACACTTATCCAAATGCTTGGAGAGGATGATTGCAAGCCTGA 842
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 GTTCGTGGAGATGGAATCAACACTTATCCAAATGCTTGGAGAGGATGATTGCAAGCCTGA 872
Query 843 TTCTTGGACCATGAACTCAACCCTTAGAGCCTTCGGGGGAAATGGACAAATAGAAATGAT 902
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 873 TTCGTGGACCATGAACTCAACTCTTAGAGCCTTTGGGGGAAATGGACAAATAGAAATGAT 932
Query 903 GGAGAATTGTTATGAGAAGTTTCAGAGCTCTGGGATTGAACCCAACATCAGAACCTTCAA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 GGAGAATTGTTATGAGAAGTTTCAGAGCTCTGGGATTGAACCCAACATCAGAACCTTCAA 992
Query 963 TATCCTCCTTGATTCATATGGGAAATCAGGGAACTACAAGAAGATGAGTGCTGTGATGGA 1022
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 993 TATCCTCCTTGATTCCTATGGGAAATCAGGAAACTACAAGAAGATGAGTGCTGTGATGGA 1052
Query 1023 ATACATGCAGAAGTATCACTATTCATGGACCATAGTCACCTACAATGTGGTTATTGACGC 1082
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1053 ATACATGCAGAAGTATCATTATTCATGGACCATAGTCACCTATAATGTGGTCATTGACGC 1112
Query 1083 GTTTGGGAGGGCAGGAGACTTGAAACAAATGGAATACTTATTTAGACTAATGCAATCAGA 1142
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1113 GTTTGGGAGGGCAGGAGACTTAAAACAAATGGAATACTTATTTAGACTGATGCAATCAGA 1172
Query 1143 GAGAATTATACCAAGCTGTGTTACACTATGTTCTCTTGTTCGTGCCTATGGAAGAGCTGG 1202
||||||| | || || ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1173 GAGAATTTTCCCGAGTTGTGTTACACTATGTTCTCTTGTTCGTGCTTATGGAAGAGCTAG 1232
Query 1203 TAAAGCTGATAAAATTGGAGGAGTCTTGCGTTTCATCGAGAATTCAGACATAAGGTTAGA 1262
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1233 TAAAGCTGATAAAATTGGAGGAGTATTGCGTTTCATCGAGAACTCAGACATAAGGTTAGA 1292
Query 1263 CCTCGTGTTTTTTAACTGTCTGGTAGATGCGTACGGGAGGATGGAAAAGTTTGCAGAGAT 1322
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 CCTCGTGTTCTTTAACTGTCTGGTAGATGCGTACGGGAGGATGGAAAAGTTTGCAGAGAT 1352
Query 1323 GAAAGGTGTTCTCGAACTAATGGAAAAGAAGGGATTCAAACCTGATAAGATTACATACAG 1382
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 GAAAGGTGTTCTTGAACTAATGGAAAAGAAGGGATTCAAACCTGATAAGATTACATACAG 1412
Query 1383 GACAATGGTTAAGGCTTATAGAATTAGTGGCATGACTACCCATGTAAAGGAACTTCATGG 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 GACAATGGTTAAGGCTTATAGAATTAGTGGCATGACTACCCATGTAAAGGAACTTCATGG 1472
Query 1443 TGTTGTTGAGTCCGTTGGTGAAACCCAAGTTGTGTTGAAGAAGCCGGATTTTTAGCGGAG 1502
||| |||||||| ||||||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct 1473 TGTGGTTGAGTCTGTTGGTGAAGCCCAAGTTGTGGTGAAGAAGCCAGATTTTTAGTGGAG 1532
Query 1503 GAATAGAGCTCAATTTTGCTGGTATATATTTTTCTAGTATCAATCACCTTGTTCTAATGA 1562
|||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||
Sbjct 1533 GAATAGAGCTCAATTTTGCTAGTATATATCTTTCTAGTATCCATCTCCTTGTTCTAATGA 1592
Query 1563 TAAAAGGTAGTTAGTATGAGAGTAAAGTAAATACATTTTCAATTGGCTTACAA 1615
||||| ||||||||||| | || | ||||||||||||||| |||| ||||||
Sbjct 1593 TAAAATGTAGTTAGTAT-A-AG-A--GTAAATACATTTTCAGTTGGATTACAA 1640
Score = 1179 bits (638), Expect = 0.0
Identities = 738/785 (94%), Gaps = 11/785 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCGCTCTCCACCTCCACAAGCCACGCGCCACCACTCCCGACGGCGTTTAACCGT 60
|||||||| |||||||||||||| ||||||||||||||||| |||| | ||||||
Sbjct 1 ATGGTTTCACTCTCCACCTCCACTAGCCACGCGCCACCACTTCCGA---C---TAACCGC 54
Query 61 C-GACCGGCGGAGAGAACTTTCACCGTCCGATGTATCTCCATCTCCCCACGCGAGCCGAA 119
| || |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 55 CGGA-CGGCGGAGAGAACTTTTACCGTCCGCTGTATCTCCATCTCCCCACGCGAGCCTAA 113
Query 120 ACACACAATTACTTCCGATAAAAGCACCAGTACGTCCTCCTTGTCGCTTAGAGAGACGAG 179
|| ||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 114 TTACGCAATTACTTCCGATAAAAGCAACAATA---CCTCCTTGTCGCTTAGAGAGACGAG 170
Query 180 GCAAAGCAAATGGCTAATGAATTCGGAGGACGTGATTGAGAGAGATTCGAAGGAGAGTAA 239
||||||||||||||||| ||| | |||||||||| ||| |||||||||||||||| |||
Sbjct 171 ACAAAGCAAATGGCTAATCAATGCAGAGGACGTGAATGAAAGAGATTCGAAGGAGATTAA 230
Query 240 AGAGAATACGAACACAAAGATCGCTTCGAGGAAGGCAATATCGATAATACTCCGAAGAGA 299
|||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 231 AGAGGATAAGAACACGAAGATCGCTTCGAGGAAGGCGATATCGATAATACTCCGAAGAGA 290
Query 300 AGCTACAAAAGAGATAATTGAGAAGAAGAAAGGCTCGAAGAAGCTTCTTCCAAGGACTGT 359
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 AGCTACAAAATCGATCATTGAGAAGAAGAAAGGCTCGAAGAAGCTTCTTCCAAGGACTGT 350
Query 360 GCTTGAGTCTCTTCACGAAAGAATCACTGCTCTCCGATGGGAATCTGCTCTTCAGGTGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 351 GCTTGAGTCTCTTCACGAAAGAATCACTGCTCTCCGATGGGAATCTGCTATTCAGGTGTT 410
Query 420 TGAGCTATTGCGCGAACAGCTATGGTACAAACCAAACGTTGGTATCTATGTGAAGCTGAT 479
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 411 TGAACTATTGCGCGAACAGCTATGGTACAAACCAAACGTTGGCATCTATGTGAAGCTGAT 470
Query 480 TGTGATGCTTGGAAAATGCAAACAACCGGAAAAGGCTCATGAACTCTTTCAGGAAATGAT 539
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 TGTGATGCTTGGAAAATGCAAACAGCCGGAAAAGGCTCATGAACTCTTTCAGGAAATGAT 530
Query 540 TAATGAAGGCTGTGTGGTGAATCATGAAGTGTATACTGCACTTTTATCTGCTTATAGTAG 599
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 531 TAATGAAGGTTGTGTGGTGAATCATGAAGTGTATACTGCACTTGTATCTGCTTATAGTAG 590
Query 600 GAGCGGACGCTTTGATGCTGCGTTTACTCTTCTGGAACGTATGAAAAGTAGTCATAACTG 659
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 GAGTGGACGCTTTGATGCTGCGTTTACTCTTCTGGAACGTATGAAAAGTAGTCATAACTG 650
Query 660 TCAGCCGGATGTGCACACGTATTCCATCCTCATTAAGTCGTTTCTTCAGGTTTTTGCGTT 719
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 651 TCAGCCGGATGTGCACACTTATTCCATCCTTATTAAGTCGTTTCTTCAGGTTTTTGCGTT 710
Query 720 TGATAAGGTTCAGGATCTGCTTTCTGATATGAGAAGACAGGGTATTAGGCCTAATACAAT 779
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TGATAAAGTTCAGGATCTGCTTTCTGATATGAGAAGACAGGGTATTAGGCCTAATACAAT 770
Query 780 CACGT 784
|||||
Sbjct 771 CACGT 775
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5