BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494941
Length=728
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48760.1 | Symbols: | Ribosomal protein L13 family protein ... 1013 0.0
AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein ... 551 4e-156
> AT5G48760.1 | Symbols: | Ribosomal protein L13 family protein
| chr5:19771138-19772722 REVERSE LENGTH=834
Length=834
Score = 1013 bits (548), Expect = 0.0
Identities = 602/629 (96%), Gaps = 0/629 (0%)
Strand=Plus/Plus
Query 1 CGAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTAGACGCGCGCCACC 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 32 CGAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGCGCCACC 91
Query 61 ACATGCTTGGTCGTCTTGCGTCAATCACCGCTAAAGAGCTTCTCAATGGCCAGAAAGTTG 120
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 92 ACATGCTTGGCCGTCTTGCGTCGATCACCGCTAAAGAGCTTCTCAATGGCCAGAAAGTTG 151
Query 121 TCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGTGGACTCGTTCGTCAGAAAATGAAGT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 152 TCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAAAATGAAGT 211
Query 181 ACATGAGATTCCTTCGCAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCACTTCC 240
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 212 ACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCC 271
Query 241 GTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAAACGAAGC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 272 GTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAGACGAAGC 331
Query 301 GTGGAGCTGCTGCATTAGCTCGTTTGAAGGTATTTGAAGGTGTTCCTACTCCGTATGATA 360
||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| |
Sbjct 332 GTGGAGCTGCTGCATTAGCACGTCTGAAGGTATATGAAGGTGTTCCTACTCCATATGACA 391
Query 361 AGATCAAGAGGATGGTTATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTCATA 420
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 392 AGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTCACA 451
Query 421 AATACTGTCTTTTGGGTCGTCTTTCGTCTGAAGTTGGGTGGAACCATTACGATACCATCA 480
|||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 452 AATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCATCA 511
Query 481 AGGAGCTGGAGACAAAGAGGAAAGAGAGAGCTCAAGTGGTTTACGAGCGAAAGAAGCAAC 540
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 512 AGGAGCTGGAGACAAAGAGGAAGGAGAGAGCCCACGTGGTTTACGAGCGAAAGAAGCAAC 571
Query 541 TTAACAAACTTAGAGTTAAGGCTGAGAAGGTTGCTGAAGAGAAGCTCGGAGCACAGCTCG 600
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 572 TTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCTCGGAGCACAGCTCG 631
Query 601 ATATTCTTGCACCAGTCAAGTACTGAGCT 629
|||||||||| ||||| ||||||||||||
Sbjct 632 ATATTCTTGCGCCAGTTAAGTACTGAGCT 660
> AT3G24830.1 | Symbols: | Ribosomal protein L13 family protein
| chr3:9064532-9066089 FORWARD LENGTH=920
Length=920
Score = 551 bits (298), Expect = 4e-156
Identities = 526/635 (83%), Gaps = 20/635 (3%)
Strand=Plus/Plus
Query 2 GAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTAGACGCGCGCCACCA 61
||| |||||||| || ||||||||||| || ||||| || || || ||||| || |||||
Sbjct 78 GAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTCGTTGTTGACGCACGTCACCA 137
Query 62 CATGCT-TGGTCGTCTTGCGTCAATCACCGCTAAAGAGCTT-CTCAATGGCCAGAAAGTT 119
||| | |||||||||||| || |||| ||||||||| || |||||||| |||| |||
Sbjct 138 TATG-TGTGGTCGTCTTGCTTCGATCATAGCTAAAGAG-TTGCTCAATGGACAGAGTGTT 195
Query 120 GTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGTGGACTCGTTCGTCAGAAAATGAAG 179
|| ||||||| || || |||||||| | || ||||| | ||||||||||| ||||||
Sbjct 196 GTTGTTGTCCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAAGATGAAG 255
Query 180 TACATGAGATTCCTTCGCAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCACTTC 239
|||||||| || ||| | ||||| |||||||||||||||||||||||||||||||| |||
Sbjct 256 TACATGAGGTTTCTTAGGAAACGCATGAACACTAAACCTTCTCATGGTCCTATTCATTTC 315
Query 240 CGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAAACGAAG 299
|||||||| || || |||||||||||||| ||||| || |||||||||||||| || |||
Sbjct 316 CGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAAGACCAAG 375
Query 300 CGTGGAGCTGCTGCA-TTAGCTCGTTTGAAGGTATTTGAAGGTGTTCCTAC-TCCGTATG 357
||||| |||||||| || || ||||||||||| ||||| || || || || ||| ||||
Sbjct 376 CGTGGTGCTGCTGCTCTT-GCACGTTTGAAGGTGTTTGAGGGAGTACC-ACCTCCTTATG 433
Query 358 ATAAGATCAAGAGGATGGTTATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTC 417
| ||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 434 ACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAGGCTGGTC 493
Query 418 ATAAATACTGTCTT-TTGGGTCGTCTT-TCGTCTGAAGTTGGGTGGAACCATTACGATAC 475
| || ||||| ||| ||||| ||| || || ||||||||||| |||||||||||||||||
Sbjct 494 ACAAGTACTG-CTTGTTGGGACGT-TTGTCTTCTGAAGTTGGCTGGAACCATTACGATAC 551
Query 476 CATCAAGGAGCTGGAGACAAAGAGGAAAGAGAGAGCTCA-AGTGGTTT--ACGAGCGAAA 532
|||||||||||| ||| ||||| |||| ||||| ||| | | ||| | ||||| ||
Sbjct 552 CATCAAGGAGCTTGAGGTGAAGAG-AAAG-GAGAGGTCACAA-GCTTTGTATGAGCGTAA 608
Query 533 GAAGCAACTTAACAAACTTAGAGTTAAGGCTGAGAAGGTTGCTGAAGAGAAGCTCGGAGC 592
||||||||| | ||| || || | ||||| ||||||||||| || ||||| || ||| |
Sbjct 609 GAAGCAACTCACCAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACTTGGATC 668
Query 593 ACAGCTCGATATTCTTGCACC-AGTCAAGTACTGA 626
||||||||| |||||||| | | |||||||||||
Sbjct 669 CCAGCTCGATGTTCTTGCATCGA-TCAAGTACTGA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35314605341
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5