BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494942
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT5G48790.1 | Symbols: | Domain of unknown function (DUF1995) ... 1537 0.0
> AT5G48790.1 | Symbols: | Domain of unknown function (DUF1995)
| chr5:19779860-19782050 REVERSE LENGTH=1174
Length=1174
Score = 1537 bits (832), Expect = 0.0
Identities = 931/979 (95%), Gaps = 5/979 (1%)
Strand=Plus/Plus
Query 1 ATATGTCACCGTCCTTCTCCATCGCCACCGCCGTCTCACCGGCTTCTCTAGCCGGAACTC 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 72 ATATGTCACCGTCCTTCTCCATCGCCACCACCGTCTCACCGGCTTCTCTAGCCGGGACTC 131
Query 61 TGGTCTCTAACTCAAAGAATGTTTTGTGTAGTTTACATTGGAAGAACAATGAT-TGTACC 119
||| ||| ||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 132 TGGCCTCGAACTCAAAGAATGTTTTGTGTAGTTTACATTCAAAGAACAATGATAT-TACC 190
Query 120 AAGACGAATAGGAATCTCAAGTTTAGAGCTGGTTCTGTTTCTGGAGGGTATAACAAC--- 176
||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 191 AAGACAAATAGGAATCTGAAGTTTAGAGCTTGTTCTGTTTCTGGAGGGTATAACAACAAT 250
Query 177 ACATCTGTGGACAATGTACCTTTTCCTCGTGATTACTTCGAGCTCATTAACCAAGCCAAA 236
|||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||
Sbjct 251 ACATCTGTGGACAATGTACCTTTTCCTCGTGATTACGTCGAGCTCATTAATCAGGCCAAA 310
Query 237 GAAGCAGTTGAATTGGCAATGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACA 296
|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GAAGCAGTGGAAATGGCTTTGAAGGATGAGAAACAGTTAATGGAAATTGAGTTCCCAACA 370
Query 297 TCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATA 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TCTGGTCTAGCATCTGTGCCAGGTGATGGTGAAGGAGCTACAGAAATGACAGAAAGTATA 430
Query 357 AATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAACCACAAGA 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 431 AATATGATACGCGAGTTTTGTGACCGACTATTAGCTCCTGAAAAGGCTCGAAGTACAAGA 490
Query 417 ATTTTCTTCCCGGAAGCAAACGAAGTAAAATTTGCTCAAAAGACAGTCTTTGGAGGAACT 476
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 491 ATTTTCTTCCCGGAAGCAAATGAAGTCAAATTTGCTCAAAAGACAGTCTTTGGAGGAACT 550
Query 477 TACTTCAAGTTGGACTATCTAACAAAACCCTCTCTTTTTGAGGATTTTGGTTTCTTTGAG 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 551 TACTTCAAGTTGGACTATCTAACAAAACCATCTCTTTTTGAGGATTTTGGTTTCTTTGAG 610
Query 537 AGAGTAAAAATGTCGGATCGAGTGAAGCCAGAAGACGAATTGTTTCTTGTCGCATACCCA 596
|||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 611 AGAGTAAAAATGGCAGATCGAGTGAAGCCAGAAGACGAACTGTTTCTTGTCGCATACCCG 670
Query 597 TATTTTAATGTCAACGAGATGCTCGTAGTGGAAGAGCTATACAAGGAAGCTGTTGTGAAC 656
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 671 TATTTTAATGTCAACGAGATGCTTGTAGTGGAAGAGCTCTACAAGGAAGCTGTTGTGAAC 730
Query 657 ACTGATCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGCTACTAT 716
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 731 ACTGACCGAAAACTAATCATCTTCAATGGAGAACTTGACCGCATACGATCGGGTTACTAT 790
Query 717 CCAAAGTTCTTTTACCCGAAACTTGCTGCACTGACCAAGACTCTTCTTCCAAAGATGGAG 776
|||||||||||||| |||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 791 CCAAAGTTCTTTTATCCGAAACTGGCTGCACTTACCAAGACACTTCTTCCAAAGATGGAG 850
Query 777 ACAGTGTACTACATCCACAATTTCAAGGGACAAAAAGGAGGTGTCCTTTTCAGATGTTAT 836
|||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 851 ACAGTGTACTACATCCACAATTTCAAAGGACAGAAAGGAGGTGTACTTTTCAGATGTTAT 910
Query 837 CCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAGTTACATATGTGTTCATCAGCAA 896
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 911 CCAGGTCCATGGCAAGTACTGAGGAGAACAAGGAACAAATACATTTGTGTTCATCAGCAA 970
Query 897 GAATCCATGCCTTCTCTCAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGAGATTCT 956
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 971 GAATCCATGCCTTCTCTTAAGGAAGTTGCCCTCGACATTCTTGCGTCCGCTTGAGATTTT 1030
Query 957 TGTAATGAAACTTCTTCAT 975
|||| |||||||| |||||
Sbjct 1031 TGTATTGAAACTTTTTCAT 1049
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5